Wall clock time and date at job start Mon Mar 30 2020 02:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08991 * 109.46952 * 2 1 4 4 C 1.52997 * 109.46651 * 239.99933 * 2 1 3 5 5 C 1.53011 * 109.46651 * 174.99998 * 4 2 1 6 6 C 1.50698 * 109.46645 * 180.02562 * 5 4 2 7 7 H 1.07994 * 120.00380 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99441 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00387 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99770 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47147 * 59.99934 * 10 8 6 12 12 H 1.48502 * 109.46979 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47016 * 299.99612 * 10 8 6 14 14 N 1.46901 * 109.46937 * 119.99872 * 2 1 3 15 15 C 1.46890 * 110.99955 * 273.27507 * 14 2 1 16 16 C 1.50703 * 115.54935 * 157.03848 * 15 14 2 17 17 C 1.38224 * 120.00911 * 270.10588 * 16 15 14 18 18 C 1.38223 * 120.02333 * 179.72235 * 17 16 15 19 19 C 1.38264 * 120.04944 * 0.55324 * 18 17 16 20 20 C 1.38175 * 120.03066 * 359.72350 * 19 18 17 21 21 C 1.38436 * 120.01491 * 90.38287 * 16 15 14 22 22 F 1.35092 * 120.02523 * 359.97438 * 21 16 15 23 23 C 1.53001 * 117.50121 * 11.32360 * 15 14 2 24 24 C 1.52997 * 60.00029 * 252.51192 * 23 15 14 25 25 H 1.08997 * 109.46914 * 294.21912 * 1 2 3 26 26 H 1.09001 * 109.47131 * 54.22609 * 1 2 3 27 27 H 1.09007 * 109.46854 * 174.22336 * 1 2 3 28 28 H 1.08997 * 109.47412 * 55.00483 * 4 2 1 29 29 H 1.08998 * 109.47583 * 294.99638 * 4 2 1 30 30 H 1.08998 * 109.46833 * 300.00100 * 5 4 2 31 31 H 1.08997 * 109.46817 * 60.00120 * 5 4 2 32 32 H 0.97001 * 120.00404 * 180.02562 * 9 8 6 33 33 H 1.00895 * 110.99910 * 37.23289 * 14 2 1 34 34 H 1.07995 * 119.98640 * 359.97438 * 17 16 15 35 35 H 1.07999 * 119.97312 * 180.25389 * 18 17 16 36 36 H 1.08004 * 119.98553 * 179.74699 * 19 18 17 37 37 H 1.07993 * 120.01624 * 180.02562 * 20 19 18 38 38 H 1.09002 * 117.49951 * 0.02562 * 23 15 14 39 39 H 1.09006 * 117.49612 * 145.01791 * 23 15 14 40 40 H 1.09000 * 117.49703 * 252.50698 * 24 23 15 41 41 H 1.08996 * 117.49834 * 107.49226 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3137 6 6 4.0670 -1.3232 -2.5445 7 1 3.3686 -1.8037 -3.2136 8 6 5.4184 -1.3601 -2.8158 9 7 6.2690 -0.7755 -2.0008 10 14 6.0410 -2.2407 -4.3411 11 1 5.4492 -1.6143 -5.5505 12 1 7.5210 -2.1358 -4.4037 13 1 5.6478 -3.6715 -4.2818 14 7 2.0197 -0.6925 1.1995 15 6 2.1213 0.2320 2.3364 16 6 2.0807 -0.4080 3.7002 17 6 0.8702 -0.5929 4.3413 18 6 0.8321 -1.1851 5.5897 19 6 2.0055 -1.5827 6.2035 20 6 3.2172 -1.3938 5.5670 21 6 3.2562 -0.8057 4.3138 22 9 4.4403 -0.6209 3.6903 23 6 1.4796 1.6126 2.1840 24 6 3.0028 1.4705 2.1633 25 1 -0.3633 0.4216 0.9372 26 1 -0.3633 0.6008 -0.8338 27 1 -0.3633 -1.0225 -0.1034 28 1 1.6054 -0.2617 -2.1370 29 1 1.7516 -1.7715 -1.2056 30 1 3.8532 0.4370 -1.3573 31 1 3.9994 -1.0728 -0.4260 32 1 7.2197 -0.8012 -2.1919 33 1 1.4331 -1.4815 1.4262 34 1 -0.0465 -0.2782 3.8649 35 1 -0.1146 -1.3329 6.0881 36 1 1.9748 -2.0416 7.1807 37 1 4.1336 -1.7048 6.0464 38 1 0.9816 1.8347 1.2401 39 1 1.0276 2.0581 3.0702 40 1 3.5530 1.8227 3.0359 41 1 3.5073 1.5993 1.2058 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172484291.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:56 Heat of formation + Delta-G solvation = -18.760884 kcal Electronic energy + Delta-G solvation = -21641.527991 eV Core-core repulsion = 18435.468906 eV Total energy + Delta-G solvation = -3206.059085 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.80279 -40.89832 -39.14375 -36.42406 -34.79522 -31.91866 -31.85654 -31.27984 -29.93613 -27.02656 -24.67901 -24.02063 -23.20110 -22.84428 -21.54878 -20.59081 -18.61433 -18.36139 -17.73357 -17.12329 -16.81471 -16.52399 -16.41744 -15.81374 -15.03753 -14.88778 -14.74660 -14.54216 -14.30978 -14.08750 -13.86832 -13.64384 -13.23935 -13.16927 -12.89733 -12.82952 -12.55977 -12.36296 -12.29180 -12.20219 -11.86488 -11.69144 -11.57139 -11.30345 -11.21691 -10.91248 -10.50240 -9.95610 -9.61446 -8.97542 -8.14519 -6.26375 0.19733 0.27588 1.37433 1.41777 1.49435 2.42309 2.61280 2.76327 3.12299 3.17275 3.44061 3.50692 3.85720 3.91969 4.01609 4.05308 4.18435 4.33901 4.39778 4.46563 4.49424 4.57756 4.66529 4.76881 4.88071 4.98695 4.99946 5.04523 5.11154 5.15214 5.16872 5.27862 5.29799 5.41932 5.44964 5.48017 5.56659 5.85233 5.97939 6.00551 6.21326 6.32046 6.56809 6.93890 7.42076 8.96601 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020380 B = 0.004573 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.551617 B = 6121.338445 C = 6836.044556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.085 3.915 3 H 0.066 0.934 4 C -0.088 4.088 5 C 0.042 3.958 6 C -0.545 4.545 7 H 0.057 0.943 8 C -0.003 4.003 9 N -0.934 5.934 10 Si 0.964 3.036 11 H -0.265 1.265 12 H -0.284 1.284 13 H -0.267 1.267 14 N -0.650 5.650 15 C 0.095 3.905 16 C -0.098 4.098 17 C -0.080 4.080 18 C -0.124 4.124 19 C -0.084 4.084 20 C -0.167 4.167 21 C 0.083 3.917 22 F -0.156 7.156 23 C -0.182 4.182 24 C -0.184 4.184 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.047 0.953 30 H -0.027 1.027 31 H -0.004 1.004 32 H 0.260 0.740 33 H 0.347 0.653 34 H 0.150 0.850 35 H 0.165 0.835 36 H 0.166 0.834 37 H 0.143 0.857 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.091 0.909 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.651 1.069 17.878 23.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.024 4.024 3 H 0.084 0.916 4 C -0.126 4.126 5 C 0.005 3.995 6 C -0.583 4.583 7 H 0.076 0.924 8 C -0.200 4.200 9 N -0.575 5.575 10 Si 0.788 3.212 11 H -0.190 1.190 12 H -0.209 1.209 13 H -0.192 1.192 14 N -0.279 5.279 15 C 0.003 3.997 16 C -0.100 4.100 17 C -0.098 4.098 18 C -0.142 4.142 19 C -0.101 4.101 20 C -0.185 4.185 21 C 0.063 3.937 22 F -0.135 7.135 23 C -0.221 4.221 24 C -0.222 4.222 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.066 0.934 30 H -0.009 1.009 31 H 0.015 0.985 32 H 0.069 0.931 33 H 0.167 0.833 34 H 0.168 0.832 35 H 0.183 0.817 36 H 0.183 0.817 37 H 0.161 0.839 38 H 0.128 0.872 39 H 0.134 0.866 40 H 0.110 0.890 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.762 1.139 17.668 23.051 hybrid contribution 0.742 -0.072 -0.997 1.245 sum -14.020 1.068 16.671 21.808 Atomic orbital electron populations 1.22490 0.94485 1.02899 1.03017 1.21677 0.93978 0.97367 0.89378 0.91584 1.21469 0.96392 0.99139 0.95642 1.18780 0.92350 0.93567 0.94847 1.21790 0.92586 1.34557 1.09372 0.92436 1.26010 0.97383 0.96486 1.00122 1.70145 1.02548 1.45653 1.39105 0.85533 0.76978 0.79247 0.79459 1.18975 1.20921 1.19204 1.60173 1.56372 1.09390 1.01982 1.19883 1.04918 0.86500 0.88376 1.19130 0.93300 1.03114 0.94453 1.21165 0.96085 0.97215 0.95321 1.21596 0.99991 0.97960 0.94611 1.21444 0.90558 0.97338 1.00810 1.21434 1.01607 1.02018 0.93468 1.18148 0.80700 1.01691 0.93141 1.91501 1.45769 1.93284 1.82934 1.23859 0.94304 0.99314 1.04621 1.23019 0.94562 1.02556 1.02069 0.90803 0.91382 0.91835 0.92806 0.93402 1.00882 0.98522 0.93089 0.83331 0.83237 0.81702 0.81694 0.83903 0.87191 0.86627 0.89030 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.15 8.52 71.98 0.61 -3.54 16 2 C 0.09 2.92 2.01 44.92 0.09 3.01 16 3 H 0.07 2.44 5.13 -2.39 -0.01 2.43 16 4 C -0.09 -3.83 4.83 30.60 0.15 -3.68 16 5 C 0.04 2.38 4.86 29.85 0.15 2.53 16 6 C -0.55 -33.17 9.11 25.60 0.23 -32.93 16 7 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 8 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 9 N -0.93 -61.03 13.29 21.45 0.28 -60.75 16 10 Si 0.96 46.79 29.54 68.60 2.03 48.81 16 11 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 13 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 14 N -0.65 -22.81 5.95 -451.98 -2.69 -25.50 16 15 C 0.10 2.92 2.43 2.78 0.01 2.93 16 16 C -0.10 -2.63 5.09 -19.82 -0.10 -2.73 16 17 C -0.08 -1.46 9.57 22.26 0.21 -1.25 16 18 C -0.12 -1.69 10.04 22.27 0.22 -1.47 16 19 C -0.08 -1.24 10.04 22.26 0.22 -1.02 16 20 C -0.17 -3.66 10.03 22.31 0.22 -3.44 16 21 C 0.08 2.47 7.15 22.38 0.16 2.63 16 22 F -0.16 -6.02 16.22 44.97 0.73 -5.29 16 23 C -0.18 -4.66 8.24 30.59 0.25 -4.40 16 24 C -0.18 -6.30 8.83 30.59 0.27 -6.03 16 25 H 0.07 1.48 6.59 -2.39 -0.02 1.47 16 26 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 30 H -0.03 -1.71 8.14 -2.39 -0.02 -1.73 16 31 H 0.00 -0.23 7.75 -2.39 -0.02 -0.25 16 32 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 33 H 0.35 10.87 8.35 -89.70 -0.75 10.12 16 34 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 35 H 0.17 1.07 8.06 -2.91 -0.02 1.04 16 36 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 37 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 38 H 0.11 2.75 4.93 -2.39 -0.01 2.73 16 39 H 0.12 2.35 8.14 -2.38 -0.02 2.33 16 40 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 41 H 0.07 2.87 7.54 -2.39 -0.02 2.85 16 Total: -1.00 -75.81 338.09 3.79 -72.02 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.27 Total: 19.80 kcal Atomic # 6 Polarization: -52.26 SS G_CDS: 3.16 Total: -49.10 kcal Atomic # 7 Polarization: -83.85 SS G_CDS: -2.40 Total: -86.25 kcal Atomic # 9 Polarization: -6.02 SS G_CDS: 0.73 Total: -5.29 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.81 kcal Total: -75.81 3.79 -72.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484291.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.260 kcal (2) G-P(sol) polarization free energy of solvation -75.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds