Wall clock time and date at job start Mon Mar 30 2020 02:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47505 * 2 1 4 4 C 1.52997 * 109.46965 * 239.99788 * 2 1 3 5 5 C 1.53009 * 109.47298 * 174.99944 * 4 2 1 6 6 C 1.50702 * 109.47154 * 180.02562 * 5 4 2 7 7 H 1.08004 * 119.99997 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99864 * 179.97438 * 6 5 4 9 9 N 1.31506 * 119.99781 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99796 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46700 * 90.00492 * 10 8 6 12 12 H 1.48494 * 109.46834 * 210.00197 * 10 8 6 13 13 H 1.48495 * 109.47406 * 330.00605 * 10 8 6 14 14 N 1.46904 * 109.47490 * 119.99820 * 2 1 3 15 15 C 1.46903 * 111.00022 * 274.99973 * 14 2 1 16 16 H 1.09000 * 115.55767 * 350.68507 * 15 14 2 17 17 C 1.53068 * 117.49188 * 136.39533 * 15 14 2 18 18 C 1.52995 * 117.49731 * 204.99996 * 15 14 2 19 19 H 1.09001 * 117.50073 * 0.02562 * 18 15 14 20 20 C 1.50696 * 117.49971 * 145.02282 * 18 15 14 21 21 C 1.38248 * 119.97128 * 239.90861 * 20 18 15 22 22 C 1.38196 * 120.02483 * 179.97438 * 21 20 18 23 23 C 1.38458 * 119.97492 * 0.02562 * 22 21 20 24 24 F 1.35104 * 120.02786 * 179.97438 * 23 22 21 25 25 C 1.38465 * 119.94675 * 0.24873 * 23 22 21 26 26 C 1.38197 * 119.97511 * 359.47283 * 25 23 22 27 27 H 1.09000 * 109.47297 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46828 * 300.00156 * 1 2 3 29 29 H 1.08996 * 109.47338 * 59.99685 * 1 2 3 30 30 H 1.09000 * 109.47321 * 295.00188 * 4 2 1 31 31 H 1.09006 * 109.47136 * 54.99907 * 4 2 1 32 32 H 1.09007 * 109.46533 * 300.00045 * 5 4 2 33 33 H 1.08994 * 109.47017 * 60.00360 * 5 4 2 34 34 H 0.97008 * 120.00134 * 179.97438 * 9 8 6 35 35 H 1.00898 * 110.99969 * 151.04121 * 14 2 1 36 36 H 1.08996 * 117.49691 * 0.02562 * 17 15 14 37 37 H 1.09002 * 117.53178 * 214.95429 * 17 15 14 38 38 H 1.08002 * 119.98915 * 359.97438 * 21 20 18 39 39 H 1.07995 * 120.01604 * 180.02562 * 22 21 20 40 40 H 1.08007 * 120.01064 * 179.75151 * 25 23 22 41 41 H 1.07994 * 119.98821 * 180.29814 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 6 4.0670 -1.3233 -2.5445 7 1 3.3685 -1.8038 -3.2136 8 6 5.4183 -1.3594 -2.8165 9 7 6.2688 -0.7747 -2.0015 10 14 6.0408 -2.2400 -4.3417 11 1 6.0901 -1.2858 -5.4786 12 1 7.4024 -2.7737 -4.0840 13 1 5.1249 -3.3603 -4.6751 14 7 2.0197 -0.6925 1.1995 15 6 2.0826 0.2227 2.3469 16 1 1.9216 1.2761 2.1176 17 6 1.5682 -0.2949 3.6925 18 6 3.0705 -0.1139 3.4656 19 1 3.6741 -1.0141 3.3500 20 6 3.7464 1.0363 4.1664 21 6 5.1246 1.1436 4.1461 22 6 5.7456 2.1983 4.7880 23 6 4.9869 3.1474 5.4519 24 9 5.5929 4.1786 6.0801 25 6 3.6070 3.0357 5.4763 26 6 2.9879 1.9834 4.8289 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.7515 -1.7715 -1.2056 31 1 1.6052 -0.2618 -2.1370 32 1 3.8531 0.4370 -1.3574 33 1 3.9994 -1.0729 -0.4261 34 1 7.2195 -0.8004 -2.1925 35 1 2.9173 -1.1205 1.0287 36 1 1.1839 -1.3143 3.7259 37 1 1.0689 0.4178 4.3489 38 1 5.7162 0.4030 3.6285 39 1 6.8221 2.2822 4.7717 40 1 3.0145 3.7733 5.9973 41 1 1.9114 1.8987 4.8437 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172484316.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:05 Heat of formation + Delta-G solvation = -15.118222 kcal Electronic energy + Delta-G solvation = -20632.331470 eV Core-core repulsion = 17426.430342 eV Total energy + Delta-G solvation = -3205.901127 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.95900 -39.70370 -37.71031 -35.58381 -32.96344 -31.25004 -30.73228 -29.53413 -28.51758 -25.09778 -23.88561 -22.93744 -21.70333 -20.98702 -20.48171 -19.59355 -17.83716 -16.57340 -16.43454 -15.97721 -15.66471 -15.31415 -14.83612 -14.70347 -14.49097 -13.64850 -13.56850 -13.33594 -12.87505 -12.68683 -12.60490 -12.53293 -11.99156 -11.76453 -11.51772 -11.40654 -11.26405 -11.07886 -10.94701 -10.77840 -10.48584 -10.47094 -10.06905 -9.78648 -9.30875 -9.20644 -9.06513 -8.57742 -8.38275 -7.88594 -6.03267 -4.05413 1.02380 1.13878 3.30138 3.36673 3.38403 3.40112 4.01277 4.17744 4.32702 4.43823 4.60194 4.73273 4.77110 4.96390 5.11724 5.16505 5.32176 5.34774 5.41229 5.51174 5.64300 5.75291 5.82439 5.89275 5.91938 5.98651 6.04680 6.08729 6.18290 6.25066 6.34020 6.48906 6.49924 6.53436 6.79909 6.87265 7.04490 7.46704 7.58031 7.75667 7.81655 7.96041 8.39425 9.01184 9.59046 11.07845 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015221 B = 0.003941 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.152362 B = 7103.698795 C = 8520.470918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.084 3.916 3 H 0.040 0.960 4 C -0.116 4.116 5 C 0.021 3.979 6 C -0.520 4.520 7 H 0.055 0.945 8 C 0.058 3.942 9 N -0.895 5.895 10 Si 0.891 3.109 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.274 1.274 14 N -0.655 5.655 15 C 0.047 3.953 16 H 0.098 0.902 17 C -0.164 4.164 18 C -0.136 4.136 19 H 0.118 0.882 20 C -0.051 4.051 21 C -0.082 4.082 22 C -0.148 4.148 23 C 0.085 3.915 24 F -0.144 7.144 25 C -0.152 4.152 26 C -0.096 4.096 27 H 0.057 0.943 28 H 0.044 0.956 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.012 0.988 33 H 0.015 0.985 34 H 0.260 0.740 35 H 0.356 0.644 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.993 5.167 15.007 17.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.026 4.026 3 H 0.058 0.942 4 C -0.154 4.154 5 C -0.016 4.016 6 C -0.558 4.558 7 H 0.073 0.927 8 C -0.143 4.143 9 N -0.535 5.535 10 Si 0.719 3.281 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.198 1.198 14 N -0.289 5.289 15 C -0.064 4.064 16 H 0.115 0.885 17 C -0.203 4.203 18 C -0.155 4.155 19 H 0.136 0.864 20 C -0.052 4.052 21 C -0.100 4.100 22 C -0.167 4.167 23 C 0.066 3.934 24 F -0.123 7.123 25 C -0.171 4.171 26 C -0.114 4.114 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.031 0.969 33 H 0.033 0.967 34 H 0.070 0.930 35 H 0.180 0.820 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.150 0.850 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.388 4.970 15.183 17.602 hybrid contribution 1.456 0.310 -0.916 1.748 sum -5.932 5.280 14.267 16.328 Atomic orbital electron populations 1.21786 0.95575 1.01736 1.00250 1.21676 0.94619 0.96133 0.90123 0.94168 1.21852 0.99723 0.99474 0.94323 1.19127 0.88718 0.96897 0.96897 1.21234 0.91963 1.34317 1.08300 0.92674 1.25012 0.97075 0.95587 0.96674 1.69954 1.02372 1.44159 1.36974 0.86611 0.78150 0.79988 0.83371 1.20700 1.21232 1.19843 1.60399 1.34022 1.30669 1.03857 1.22613 1.00783 0.95757 0.87277 0.88456 1.23341 0.94146 1.03187 0.99584 1.21479 0.92494 0.98139 1.03398 0.86403 1.19283 0.93277 0.95438 0.97172 1.20958 0.94083 0.97493 0.97449 1.21156 1.00763 0.95033 0.99755 1.17726 0.91188 0.86980 0.97526 1.91483 1.83750 1.56729 1.80335 1.21078 0.92723 1.00415 1.02835 1.20925 1.00376 0.93398 0.96698 0.92400 0.93647 0.93028 0.92427 0.92601 0.96933 0.96703 0.93032 0.81972 0.87932 0.88869 0.84567 0.84705 0.84957 0.84927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.42 37.16 0.35 -1.58 16 2 C 0.08 1.41 2.61 -67.71 -0.18 1.23 16 3 H 0.04 0.71 7.57 -51.93 -0.39 0.31 16 4 C -0.12 -2.32 4.74 -26.73 -0.13 -2.45 16 5 C 0.02 0.52 4.80 -27.88 -0.13 0.38 16 6 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 7 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -26.41 13.28 55.43 0.74 -25.67 16 10 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 14 N -0.66 -10.44 6.55 -99.70 -0.65 -11.10 16 15 C 0.05 0.64 5.67 -67.68 -0.38 0.25 16 16 H 0.10 1.35 7.60 -51.93 -0.39 0.95 16 17 C -0.16 -1.84 9.79 -26.69 -0.26 -2.10 16 18 C -0.14 -1.68 5.84 -91.77 -0.54 -2.22 16 19 H 0.12 1.50 8.14 -51.93 -0.42 1.08 16 20 C -0.05 -0.62 5.61 -104.62 -0.59 -1.21 16 21 C -0.08 -1.01 9.73 -39.59 -0.39 -1.39 16 22 C -0.15 -1.76 10.03 -39.52 -0.40 -2.16 16 23 C 0.08 1.03 7.30 -39.42 -0.29 0.74 16 24 F -0.14 -1.81 17.27 2.25 0.04 -1.77 16 25 C -0.15 -1.64 10.03 -39.51 -0.40 -2.04 16 26 C -0.10 -1.04 9.29 -39.59 -0.37 -1.41 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.04 0.59 8.07 -51.93 -0.42 0.17 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.01 0.38 6.43 -51.93 -0.33 0.05 16 34 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.36 6.33 6.42 -39.29 -0.25 6.08 16 36 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.09 0.87 6.18 -51.93 -0.32 0.55 16 38 H 0.14 1.60 8.06 -52.49 -0.42 1.17 16 39 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 40 H 0.13 1.15 8.06 -52.48 -0.42 0.72 16 41 H 0.13 1.18 6.02 -52.49 -0.32 0.87 16 LS Contribution 342.91 15.07 5.17 5.17 Total: -1.00 -29.20 342.91 -10.03 -39.23 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -6.20 Total: 4.91 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: -4.10 Total: -27.20 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.08 Total: -36.77 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.20 -10.03 -39.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484316.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.108 kcal (2) G-P(sol) polarization free energy of solvation -29.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds