Wall clock time and date at job start Mon Mar 30 2020 02:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47505 * 2 1 4 4 C 1.52997 * 109.46965 * 239.99788 * 2 1 3 5 5 C 1.53009 * 109.47298 * 174.99944 * 4 2 1 6 6 C 1.50702 * 109.47154 * 180.02562 * 5 4 2 7 7 H 1.08004 * 119.99997 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99864 * 179.97438 * 6 5 4 9 9 N 1.31506 * 119.99781 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99796 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46700 * 90.00492 * 10 8 6 12 12 H 1.48494 * 109.46834 * 210.00197 * 10 8 6 13 13 H 1.48495 * 109.47406 * 330.00605 * 10 8 6 14 14 N 1.46904 * 109.47490 * 119.99820 * 2 1 3 15 15 C 1.46903 * 111.00022 * 274.99973 * 14 2 1 16 16 H 1.09000 * 115.55767 * 350.68507 * 15 14 2 17 17 C 1.53068 * 117.49188 * 136.39533 * 15 14 2 18 18 C 1.52995 * 117.49731 * 204.99996 * 15 14 2 19 19 H 1.09001 * 117.50073 * 0.02562 * 18 15 14 20 20 C 1.50696 * 117.49971 * 145.02282 * 18 15 14 21 21 C 1.38248 * 119.97128 * 239.90861 * 20 18 15 22 22 C 1.38196 * 120.02483 * 179.97438 * 21 20 18 23 23 C 1.38458 * 119.97492 * 0.02562 * 22 21 20 24 24 F 1.35104 * 120.02786 * 179.97438 * 23 22 21 25 25 C 1.38465 * 119.94675 * 0.24873 * 23 22 21 26 26 C 1.38197 * 119.97511 * 359.47283 * 25 23 22 27 27 H 1.09000 * 109.47297 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46828 * 300.00156 * 1 2 3 29 29 H 1.08996 * 109.47338 * 59.99685 * 1 2 3 30 30 H 1.09000 * 109.47321 * 295.00188 * 4 2 1 31 31 H 1.09006 * 109.47136 * 54.99907 * 4 2 1 32 32 H 1.09007 * 109.46533 * 300.00045 * 5 4 2 33 33 H 1.08994 * 109.47017 * 60.00360 * 5 4 2 34 34 H 0.97008 * 120.00134 * 179.97438 * 9 8 6 35 35 H 1.00898 * 110.99969 * 151.04121 * 14 2 1 36 36 H 1.08996 * 117.49691 * 0.02562 * 17 15 14 37 37 H 1.09002 * 117.53178 * 214.95429 * 17 15 14 38 38 H 1.08002 * 119.98915 * 359.97438 * 21 20 18 39 39 H 1.07995 * 120.01604 * 180.02562 * 22 21 20 40 40 H 1.08007 * 120.01064 * 179.75151 * 25 23 22 41 41 H 1.07994 * 119.98821 * 180.29814 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 6 4.0670 -1.3233 -2.5445 7 1 3.3685 -1.8038 -3.2136 8 6 5.4183 -1.3594 -2.8165 9 7 6.2688 -0.7747 -2.0015 10 14 6.0408 -2.2400 -4.3417 11 1 6.0901 -1.2858 -5.4786 12 1 7.4024 -2.7737 -4.0840 13 1 5.1249 -3.3603 -4.6751 14 7 2.0197 -0.6925 1.1995 15 6 2.0826 0.2227 2.3469 16 1 1.9216 1.2761 2.1176 17 6 1.5682 -0.2949 3.6925 18 6 3.0705 -0.1139 3.4656 19 1 3.6741 -1.0141 3.3500 20 6 3.7464 1.0363 4.1664 21 6 5.1246 1.1436 4.1461 22 6 5.7456 2.1983 4.7880 23 6 4.9869 3.1474 5.4519 24 9 5.5929 4.1786 6.0801 25 6 3.6070 3.0357 5.4763 26 6 2.9879 1.9834 4.8289 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.7515 -1.7715 -1.2056 31 1 1.6052 -0.2618 -2.1370 32 1 3.8531 0.4370 -1.3574 33 1 3.9994 -1.0729 -0.4261 34 1 7.2195 -0.8004 -2.1925 35 1 2.9173 -1.1205 1.0287 36 1 1.1839 -1.3143 3.7259 37 1 1.0689 0.4178 4.3489 38 1 5.7162 0.4030 3.6285 39 1 6.8221 2.2822 4.7717 40 1 3.0145 3.7733 5.9973 41 1 1.9114 1.8987 4.8437 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172484316.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:04 Heat of formation + Delta-G solvation = -29.710634 kcal Electronic energy + Delta-G solvation = -20632.964244 eV Core-core repulsion = 17426.430342 eV Total energy + Delta-G solvation = -3206.533902 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.90837 -40.65355 -38.87184 -36.89941 -34.95397 -32.15576 -32.11952 -30.97300 -29.66812 -26.99902 -24.79896 -23.87706 -23.36607 -22.14560 -21.50247 -21.03628 -18.76419 -18.50332 -17.56917 -17.00443 -16.63295 -16.56901 -16.48110 -16.10351 -15.58655 -14.80107 -14.57723 -14.50658 -14.38050 -14.20910 -13.92869 -13.55592 -13.31816 -13.11713 -12.93810 -12.82571 -12.57881 -12.44576 -12.38688 -12.16230 -11.89157 -11.81131 -11.40963 -11.36624 -11.17374 -10.94097 -10.54883 -10.09421 -9.59956 -9.04649 -8.20265 -6.30648 0.09405 0.25090 1.39763 1.40242 1.51547 2.40596 2.45852 2.95285 3.13344 3.25781 3.28399 3.66441 3.79262 3.90102 3.99341 4.09751 4.18523 4.24053 4.30091 4.42067 4.49586 4.53236 4.69316 4.79566 4.91759 4.99951 5.01797 5.02987 5.09781 5.10854 5.16339 5.20480 5.24494 5.33733 5.46602 5.54285 5.58278 5.71764 5.84377 5.90470 6.24562 6.27749 6.39525 6.85810 7.38586 8.90878 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015221 B = 0.003941 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.152362 B = 7103.698795 C = 8520.470918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.089 3.911 3 H 0.029 0.971 4 C -0.103 4.103 5 C 0.028 3.972 6 C -0.543 4.543 7 H 0.058 0.942 8 C 0.003 3.997 9 N -0.930 5.930 10 Si 0.960 3.040 11 H -0.274 1.274 12 H -0.282 1.282 13 H -0.264 1.264 14 N -0.656 5.656 15 C 0.026 3.974 16 H 0.097 0.903 17 C -0.136 4.136 18 C -0.138 4.138 19 H 0.107 0.893 20 C -0.061 4.061 21 C -0.099 4.099 22 C -0.156 4.156 23 C 0.070 3.930 24 F -0.149 7.149 25 C -0.147 4.147 26 C -0.093 4.093 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.057 0.943 32 H -0.018 1.018 33 H 0.000 1.000 34 H 0.262 0.738 35 H 0.340 0.660 36 H 0.104 0.896 37 H 0.120 0.880 38 H 0.131 0.869 39 H 0.143 0.857 40 H 0.158 0.842 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.660 5.156 15.388 18.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.021 4.021 3 H 0.047 0.953 4 C -0.141 4.141 5 C -0.009 4.009 6 C -0.581 4.581 7 H 0.076 0.924 8 C -0.195 4.195 9 N -0.571 5.571 10 Si 0.785 3.215 11 H -0.200 1.200 12 H -0.208 1.208 13 H -0.188 1.188 14 N -0.288 5.288 15 C -0.085 4.085 16 H 0.114 0.886 17 C -0.174 4.174 18 C -0.157 4.157 19 H 0.125 0.875 20 C -0.062 4.062 21 C -0.117 4.117 22 C -0.175 4.175 23 C 0.051 3.949 24 F -0.128 7.128 25 C -0.166 4.166 26 C -0.110 4.110 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.001 0.999 33 H 0.018 0.982 34 H 0.071 0.929 35 H 0.162 0.838 36 H 0.122 0.878 37 H 0.138 0.862 38 H 0.149 0.851 39 H 0.161 0.839 40 H 0.175 0.825 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -9.081 4.964 15.573 18.698 hybrid contribution 2.006 0.340 -1.001 2.267 sum -7.075 5.303 14.572 17.045 Atomic orbital electron populations 1.21692 0.92901 1.02195 1.01576 1.21595 0.96577 0.94867 0.89030 0.95337 1.21668 0.96134 0.99922 0.96378 1.18996 0.92141 0.94362 0.95422 1.21693 0.92524 1.34576 1.09303 0.92408 1.25911 0.97358 0.96306 0.99908 1.70083 1.02706 1.45394 1.38881 0.85516 0.77627 0.78997 0.79343 1.19954 1.20782 1.18775 1.60516 1.32937 1.31198 1.04179 1.22680 1.03078 0.95422 0.87312 0.88563 1.23408 0.92876 1.03779 0.97333 1.21433 0.93366 0.97936 1.02996 0.87507 1.19379 0.93273 0.95869 0.97642 1.21043 0.94630 0.97899 0.98162 1.21289 1.01442 0.94992 0.99744 1.17943 0.91983 0.87026 0.97962 1.91469 1.83950 1.56895 1.80458 1.21376 0.92297 1.00687 1.02221 1.21171 1.01487 0.92626 0.95743 0.92318 0.91985 0.92056 0.92541 0.92429 0.99947 0.98199 0.92884 0.83824 0.87773 0.86174 0.85065 0.83874 0.82461 0.82462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 9.42 71.98 0.68 -2.64 16 2 C 0.09 2.95 2.61 44.91 0.12 3.07 16 3 H 0.03 1.01 7.57 -2.38 -0.02 0.99 16 4 C -0.10 -4.17 4.74 30.60 0.15 -4.02 16 5 C 0.03 1.44 4.80 29.85 0.14 1.59 16 6 C -0.54 -30.72 9.11 25.60 0.23 -30.49 16 7 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 8 C 0.00 0.18 5.46 84.66 0.46 0.64 16 9 N -0.93 -56.09 13.28 21.45 0.28 -55.81 16 10 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 14 N -0.66 -20.86 6.55 -469.35 -3.08 -23.93 16 15 C 0.03 0.68 5.67 44.94 0.25 0.93 16 16 H 0.10 2.56 7.60 -2.39 -0.02 2.54 16 17 C -0.14 -2.72 9.79 30.62 0.30 -2.42 16 18 C -0.14 -3.35 5.84 -11.54 -0.07 -3.42 16 19 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 20 C -0.06 -1.44 5.61 -19.86 -0.11 -1.56 16 21 C -0.10 -2.50 9.73 22.26 0.22 -2.28 16 22 C -0.16 -3.73 10.03 22.31 0.22 -3.50 16 23 C 0.07 1.63 7.30 22.38 0.16 1.80 16 24 F -0.15 -3.63 17.27 44.97 0.78 -2.85 16 25 C -0.15 -2.88 10.03 22.31 0.22 -2.66 16 26 C -0.09 -1.80 9.29 22.26 0.21 -1.59 16 27 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 28 H 0.06 1.44 8.07 -2.39 -0.02 1.42 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 32 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 33 H 0.00 -0.01 6.43 -2.39 -0.02 -0.03 16 34 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 35 H 0.34 12.54 6.42 -89.70 -0.58 11.96 16 36 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.12 1.76 6.18 -2.39 -0.01 1.74 16 38 H 0.13 3.30 8.06 -2.91 -0.02 3.28 16 39 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16 40 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 41 H 0.16 2.21 6.02 -2.91 -0.02 2.19 16 Total: -1.00 -63.07 342.91 3.64 -59.43 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.44 Total: 23.54 kcal Atomic # 6 Polarization: -49.74 SS G_CDS: 3.19 Total: -46.55 kcal Atomic # 7 Polarization: -76.95 SS G_CDS: -2.79 Total: -79.74 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.78 Total: -2.85 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -63.07 3.64 -59.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484316.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.715 kcal (2) G-P(sol) polarization free energy of solvation -63.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds