Wall clock time and date at job start Mon Mar 30 2020 02:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 C 1.50701 * 109.47212 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99734 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47294 * 60.00559 * 10 8 6 12 12 H 1.48503 * 109.46954 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47431 * 300.00157 * 10 8 6 14 14 N 1.46898 * 109.47061 * 119.99908 * 2 1 3 15 15 C 1.46905 * 110.99865 * 275.00665 * 14 2 1 16 16 H 1.08997 * 115.55117 * 9.32312 * 15 14 2 17 17 C 1.53005 * 117.49533 * 223.62231 * 15 14 2 18 18 C 1.53001 * 59.99984 * 252.51019 * 17 15 14 19 19 H 1.09004 * 117.51896 * 252.52167 * 18 17 15 20 20 C 1.50695 * 117.49943 * 107.49069 * 18 17 15 21 21 C 1.38244 * 119.97551 * 351.10612 * 20 18 17 22 22 C 1.38198 * 120.02642 * 179.72923 * 21 20 18 23 23 C 1.38461 * 119.97274 * 0.51814 * 22 21 20 24 24 F 1.35102 * 120.02495 * 179.72787 * 23 22 21 25 25 C 1.38461 * 119.94868 * 359.75712 * 23 22 21 26 26 C 1.38201 * 119.97311 * 359.97438 * 25 23 22 27 27 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 28 28 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 30 30 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 31 31 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 32 32 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 33 33 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 34 34 H 0.97002 * 119.99768 * 179.97438 * 9 8 6 35 35 H 1.00895 * 111.00265 * 38.95653 * 14 2 1 36 36 H 1.08994 * 117.49878 * 359.97438 * 17 15 14 37 37 H 1.09001 * 117.49888 * 145.02130 * 17 15 14 38 38 H 1.08004 * 119.98485 * 359.97438 * 21 20 18 39 39 H 1.07998 * 120.01226 * 180.29784 * 22 21 20 40 40 H 1.08003 * 120.01167 * 179.97438 * 25 23 22 41 41 H 1.08002 * 119.98374 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 6 4.0674 -1.3240 -2.5437 7 1 3.3690 -1.8044 -3.2129 8 6 5.4187 -1.3602 -2.8154 9 7 6.2690 -0.7748 -2.0007 10 14 6.0414 -2.2408 -4.3405 11 1 5.4490 -1.6150 -5.5500 12 1 7.5214 -2.1360 -4.4030 13 1 5.6490 -3.6718 -4.2809 14 7 2.0196 -0.6925 1.1994 15 6 2.0823 0.2227 2.3469 16 1 1.6221 1.1990 2.1953 17 6 3.3265 0.1579 3.2350 18 6 1.9928 -0.3910 3.7456 19 1 1.4736 0.1816 4.5142 20 6 1.8470 -1.8879 3.8407 21 6 2.8189 -2.7120 3.3045 22 6 2.6891 -4.0848 3.3960 23 6 1.5798 -4.6349 4.0156 24 9 1.4491 -5.9769 4.1008 25 6 0.6042 -3.8086 4.5473 26 6 0.7389 -2.4360 4.4594 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3635 0.5137 0.8900 30 1 1.6055 -0.2617 -2.1369 31 1 1.7517 -1.7714 -1.2056 32 1 3.9995 -1.0726 -0.4258 33 1 3.8532 0.4372 -1.3572 34 1 7.2197 -0.8005 -2.1917 35 1 1.4496 -1.4979 1.4100 36 1 4.0983 -0.5639 2.9681 37 1 3.6851 1.0918 3.6677 38 1 3.6820 -2.2826 2.8173 39 1 3.4508 -4.7283 2.9813 40 1 -0.2617 -4.2367 5.0304 41 1 -0.0217 -1.7914 4.8744 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172484317.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:07 Heat of formation + Delta-G solvation = -27.160686 kcal Electronic energy + Delta-G solvation = -21155.619344 eV Core-core repulsion = 17949.196016 eV Total energy + Delta-G solvation = -3206.423328 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.87544 -40.73080 -38.67979 -36.79790 -34.94499 -32.10654 -32.01426 -30.94275 -29.55867 -26.96961 -24.73327 -23.89566 -23.34101 -22.08366 -21.41534 -21.08676 -18.67694 -18.35418 -17.56459 -17.07209 -16.59947 -16.52531 -16.20399 -15.74274 -15.42586 -14.98504 -14.58280 -14.44023 -14.30432 -14.08592 -13.93798 -13.75521 -13.37564 -13.14284 -12.87591 -12.82519 -12.58797 -12.40571 -12.33584 -11.90837 -11.82754 -11.63114 -11.48586 -11.27542 -11.16667 -10.87223 -10.46731 -10.01396 -9.40750 -8.92993 -8.12629 -6.22603 0.14501 0.32944 1.39401 1.42369 1.49970 2.43942 2.50784 3.14146 3.19566 3.22566 3.33161 3.70153 3.84855 3.97346 4.04180 4.13798 4.24051 4.31146 4.39195 4.42464 4.50302 4.57891 4.76914 4.79030 4.94950 5.03713 5.05490 5.06072 5.10429 5.15350 5.19644 5.30896 5.33038 5.38061 5.48689 5.60321 5.67380 5.92052 5.97061 6.05212 6.35705 6.37399 6.60673 6.97007 7.45147 8.98179 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014809 B = 0.004579 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.250371 B = 6113.707704 C = 6969.200316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.093 3.907 3 H 0.065 0.935 4 C -0.089 4.089 5 C 0.042 3.958 6 C -0.544 4.544 7 H 0.052 0.948 8 C 0.002 3.998 9 N -0.931 5.931 10 Si 0.957 3.043 11 H -0.267 1.267 12 H -0.283 1.283 13 H -0.270 1.270 14 N -0.658 5.658 15 C 0.030 3.970 16 H 0.114 0.886 17 C -0.177 4.177 18 C -0.111 4.111 19 H 0.143 0.857 20 C -0.065 4.065 21 C -0.084 4.084 22 C -0.165 4.165 23 C 0.073 3.927 24 F -0.152 7.152 25 C -0.151 4.151 26 C -0.079 4.079 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.041 0.959 32 H 0.004 0.996 33 H -0.023 1.023 34 H 0.261 0.739 35 H 0.340 0.660 36 H 0.080 0.920 37 H 0.111 0.889 38 H 0.122 0.878 39 H 0.129 0.871 40 H 0.157 0.843 41 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.830 -0.317 15.586 20.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.017 4.017 3 H 0.084 0.916 4 C -0.127 4.127 5 C 0.005 3.995 6 C -0.582 4.582 7 H 0.071 0.929 8 C -0.196 4.196 9 N -0.571 5.571 10 Si 0.782 3.218 11 H -0.192 1.192 12 H -0.208 1.208 13 H -0.195 1.195 14 N -0.289 5.289 15 C -0.080 4.080 16 H 0.131 0.869 17 C -0.215 4.215 18 C -0.130 4.130 19 H 0.161 0.839 20 C -0.065 4.065 21 C -0.102 4.102 22 C -0.183 4.183 23 C 0.054 3.946 24 F -0.131 7.131 25 C -0.170 4.170 26 C -0.097 4.097 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.023 0.977 33 H -0.004 1.004 34 H 0.069 0.931 35 H 0.161 0.839 36 H 0.098 0.902 37 H 0.130 0.870 38 H 0.140 0.860 39 H 0.147 0.853 40 H 0.175 0.825 41 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -13.002 -0.271 15.423 20.175 hybrid contribution 0.191 -0.766 -0.823 1.140 sum -12.811 -1.037 14.601 19.452 Atomic orbital electron populations 1.22409 0.95413 1.02139 1.02673 1.21565 0.93246 0.97032 0.89817 0.91626 1.21460 0.96737 0.98801 0.95733 1.18781 0.91987 0.93816 0.94894 1.21788 0.92460 1.34416 1.09528 0.92933 1.25895 0.97389 0.96470 0.99829 1.70106 1.02513 1.45562 1.38928 0.85631 0.77065 0.79228 0.79881 1.19236 1.20837 1.19531 1.60129 1.57424 1.08918 1.02459 1.22580 1.02031 0.96992 0.86419 0.86861 1.23340 0.91626 1.03114 1.03461 1.21511 1.02098 0.91242 0.98147 0.83947 1.19285 0.94707 0.94072 0.98424 1.21046 0.99559 0.92171 0.97421 1.21250 0.98459 0.96497 1.02143 1.17961 0.97324 0.76903 1.02382 1.91460 1.96072 1.30823 1.94710 1.21354 0.99455 0.93944 1.02233 1.21111 0.97142 0.93930 0.97469 0.91737 0.92644 0.91364 0.93238 0.93982 0.97718 1.00414 0.93076 0.83885 0.90200 0.87046 0.85977 0.85280 0.82541 0.81936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.06 9.16 71.98 0.66 -3.40 16 2 C 0.09 3.01 2.48 44.91 0.11 3.12 16 3 H 0.07 2.22 7.73 -2.39 -0.02 2.20 16 4 C -0.09 -3.72 4.83 30.59 0.15 -3.58 16 5 C 0.04 2.30 4.86 29.85 0.15 2.44 16 6 C -0.54 -32.07 9.11 25.60 0.23 -31.84 16 7 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 8 C 0.00 0.10 5.46 84.66 0.46 0.56 16 9 N -0.93 -58.23 13.29 21.45 0.28 -57.94 16 10 Si 0.96 45.67 29.54 68.60 2.03 47.70 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 13 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 14 N -0.66 -20.41 5.30 -469.46 -2.49 -22.90 16 15 C 0.03 0.75 5.93 44.92 0.27 1.02 16 16 H 0.11 2.48 7.77 -2.39 -0.02 2.46 16 17 C -0.18 -4.40 9.79 30.60 0.30 -4.10 16 18 C -0.11 -2.18 6.04 -11.54 -0.07 -2.25 16 19 H 0.14 1.93 8.14 -2.39 -0.02 1.91 16 20 C -0.06 -1.40 4.62 -19.86 -0.09 -1.50 16 21 C -0.08 -2.26 8.22 22.26 0.18 -2.08 16 22 C -0.16 -4.43 10.03 22.31 0.22 -4.21 16 23 C 0.07 1.81 7.30 22.38 0.16 1.98 16 24 F -0.15 -4.01 17.27 44.97 0.78 -3.23 16 25 C -0.15 -2.89 10.03 22.31 0.22 -2.67 16 26 C -0.08 -1.37 9.73 22.26 0.22 -1.15 16 27 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.05 1.33 8.13 -2.39 -0.02 1.31 16 29 H 0.07 1.37 8.07 -2.39 -0.02 1.35 16 30 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.00 0.26 7.75 -2.39 -0.02 0.24 16 33 H -0.02 -1.34 8.14 -2.39 -0.02 -1.36 16 34 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 35 H 0.34 10.08 6.89 -89.70 -0.62 9.47 16 36 H 0.08 2.43 6.18 -2.39 -0.01 2.42 16 37 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.12 3.80 6.02 -2.91 -0.02 3.78 16 39 H 0.13 3.46 8.06 -2.91 -0.02 3.44 16 40 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 41 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -67.78 341.93 4.17 -63.61 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.40 Total: 20.43 kcal Atomic # 6 Polarization: -50.83 SS G_CDS: 3.17 Total: -47.66 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -2.20 Total: -80.85 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.78 Total: -3.23 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -67.78 4.17 -63.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484317.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.450 kcal (2) G-P(sol) polarization free energy of solvation -67.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds