Wall clock time and date at job start Mon Mar 30 2020 02:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47237 * 2 1 4 4 C 1.52999 * 109.46590 * 240.00129 * 2 1 3 5 5 C 1.53013 * 109.46893 * 176.01061 * 4 2 1 6 6 C 1.50694 * 109.47018 * 183.00101 * 5 4 2 7 7 H 1.08004 * 120.00320 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99831 * 179.72819 * 6 5 4 9 9 N 1.31511 * 119.99979 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00072 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47152 * 359.97438 * 10 8 6 12 12 H 1.48506 * 109.46995 * 119.99479 * 10 8 6 13 13 H 1.48501 * 109.47101 * 239.99353 * 10 8 6 14 14 N 1.46898 * 109.47007 * 120.00484 * 2 1 3 15 15 C 1.46898 * 110.99825 * 280.79060 * 14 2 1 16 16 C 1.50709 * 115.55159 * 299.32735 * 15 14 2 17 17 C 1.38268 * 119.98378 * 343.06015 * 16 15 14 18 18 C 1.38220 * 120.04949 * 179.97438 * 17 16 15 19 19 C 1.38218 * 120.02420 * 0.02562 * 18 17 16 20 20 C 1.38440 * 119.97597 * 359.97438 * 19 18 17 21 21 F 1.35099 * 120.02288 * 180.02562 * 20 19 18 22 22 C 1.38170 * 119.98675 * 162.78875 * 16 15 14 23 23 C 1.53005 * 117.49952 * 153.65616 * 15 14 2 24 24 C 1.53001 * 117.50081 * 84.99819 * 15 14 2 25 25 H 1.09001 * 109.46942 * 306.54620 * 1 2 3 26 26 H 1.08998 * 109.47177 * 66.54502 * 1 2 3 27 27 H 1.08996 * 109.47329 * 186.55169 * 1 2 3 28 28 H 1.09000 * 109.47609 * 56.01333 * 4 2 1 29 29 H 1.08996 * 109.47403 * 296.00611 * 4 2 1 30 30 H 1.08999 * 109.46448 * 62.99679 * 5 4 2 31 31 H 1.08996 * 109.46621 * 302.99962 * 5 4 2 32 32 H 0.96999 * 120.00466 * 180.02562 * 9 8 6 33 33 H 1.00895 * 111.00233 * 156.84114 * 14 2 1 34 34 H 1.08001 * 119.97475 * 0.02562 * 17 16 15 35 35 H 1.08003 * 119.98463 * 179.97438 * 18 17 16 36 36 H 1.08004 * 120.00946 * 179.97438 * 19 18 17 37 37 H 1.07997 * 120.01711 * 359.97438 * 22 16 15 38 38 H 1.08994 * 117.49670 * 0.02562 * 23 15 14 39 39 H 1.09000 * 117.49897 * 145.02328 * 23 15 14 40 40 H 1.09006 * 117.50096 * 214.98534 * 24 15 14 41 41 H 1.09005 * 117.49700 * 359.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5667 -0.6349 -1.3005 6 6 4.0641 -1.2809 -2.5679 7 1 3.3616 -1.7105 -3.2668 8 6 5.4156 -1.3190 -2.8378 9 7 6.2707 -0.7912 -1.9894 10 14 6.0323 -2.1204 -4.4085 11 1 4.8777 -2.6353 -5.1877 12 1 6.7696 -1.1180 -5.2191 13 1 6.9397 -3.2452 -4.0671 14 7 2.0197 -0.6926 1.1994 15 6 1.9531 0.1831 2.3769 16 6 2.7721 1.4455 2.2954 17 6 3.7751 1.5587 1.3504 18 6 4.5267 2.7162 1.2741 19 6 4.2768 3.7617 2.1429 20 6 3.2728 3.6495 3.0894 21 9 3.0273 4.6710 3.9388 22 6 2.5167 2.4916 3.1613 23 6 1.8186 -0.4845 3.7471 24 6 0.6246 0.2505 3.1330 25 1 -0.3633 0.6120 0.8256 26 1 -0.3633 0.4090 -0.9427 27 1 -0.3634 -1.0209 0.1172 28 1 1.6194 -0.2503 -2.1378 29 1 1.7362 -1.7674 -1.2143 30 1 3.9889 -1.1523 -0.4390 31 1 3.8723 0.4112 -1.2818 32 1 7.2216 -0.8177 -2.1793 33 1 2.9567 -1.0395 1.0594 34 1 3.9708 0.7424 0.6709 35 1 5.3102 2.8033 0.5358 36 1 4.8645 4.6658 2.0833 37 1 1.7301 2.4048 3.8961 38 1 1.7801 -1.5734 3.7747 39 1 2.3222 -0.0104 4.5895 40 1 0.3431 1.2079 3.5716 41 1 -0.2001 -0.3546 2.7563 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172484358.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:02 Heat of formation + Delta-G solvation = -8.967386 kcal Electronic energy + Delta-G solvation = -21768.454257 eV Core-core repulsion = 18562.819850 eV Total energy + Delta-G solvation = -3205.634407 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.82948 -39.95883 -37.32724 -35.57461 -32.91567 -30.60981 -30.57353 -29.82821 -28.74929 -25.11419 -23.47014 -22.61729 -22.18255 -21.60202 -19.94891 -19.36674 -17.55015 -16.50542 -16.20958 -15.88823 -15.53595 -15.34460 -14.97250 -14.62210 -14.46836 -13.93652 -13.24650 -13.04405 -12.94131 -12.59691 -12.46485 -12.25601 -11.79426 -11.66340 -11.51652 -11.25093 -11.24425 -11.09480 -10.96011 -10.72813 -10.48799 -10.27979 -10.05797 -9.79168 -9.29950 -9.04589 -8.76320 -8.44587 -8.35127 -8.19894 -6.05914 -4.07254 1.25288 1.32928 3.28105 3.36285 3.40316 3.55769 4.08204 4.22866 4.33680 4.42503 4.60659 4.83239 5.03038 5.10305 5.30533 5.34121 5.39868 5.48505 5.53222 5.63380 5.69610 5.74220 5.89849 5.96474 5.99965 6.12034 6.22762 6.23981 6.24065 6.36148 6.46956 6.50424 6.57488 6.68127 6.87869 7.01501 7.04251 7.44750 7.54525 7.71692 7.78638 7.92528 8.37864 8.98691 9.57362 11.05212 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017349 B = 0.005171 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.566347 B = 5413.158993 C = 6477.623785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.079 3.921 3 H 0.045 0.955 4 C -0.115 4.115 5 C 0.019 3.981 6 C -0.518 4.518 7 H 0.055 0.945 8 C 0.058 3.942 9 N -0.895 5.895 10 Si 0.890 3.110 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.284 1.284 14 N -0.644 5.644 15 C 0.072 3.928 16 C -0.040 4.040 17 C -0.122 4.122 18 C -0.079 4.079 19 C -0.162 4.162 20 C 0.091 3.909 21 F -0.146 7.146 22 C -0.157 4.157 23 C -0.151 4.151 24 C -0.156 4.156 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.015 0.985 31 H 0.016 0.984 32 H 0.260 0.740 33 H 0.356 0.644 34 H 0.148 0.852 35 H 0.137 0.863 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.967 5.810 10.893 14.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.030 4.030 3 H 0.063 0.937 4 C -0.153 4.153 5 C -0.018 4.018 6 C -0.556 4.556 7 H 0.074 0.926 8 C -0.143 4.143 9 N -0.534 5.534 10 Si 0.718 3.282 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.210 1.210 14 N -0.277 5.277 15 C -0.021 4.021 16 C -0.043 4.043 17 C -0.140 4.140 18 C -0.097 4.097 19 C -0.181 4.181 20 C 0.072 3.928 21 F -0.125 7.125 22 C -0.176 4.176 23 C -0.189 4.189 24 C -0.194 4.194 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.033 0.967 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.180 0.820 34 H 0.165 0.835 35 H 0.155 0.845 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.123 0.877 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.390 5.537 11.047 14.936 hybrid contribution 1.263 0.460 -0.950 1.645 sum -7.127 5.997 10.097 13.737 Atomic orbital electron populations 1.21843 0.95677 1.01614 1.00506 1.21687 0.94713 0.96632 0.89918 0.93709 1.21840 0.99671 0.99528 0.94265 1.19194 0.88812 0.96818 0.97015 1.21251 0.91833 1.37183 1.05359 0.92630 1.24994 0.97061 0.95510 0.96722 1.69940 1.02158 1.45416 1.35906 0.86565 0.78851 0.79171 0.83598 1.19759 1.21080 1.21026 1.60555 1.30729 1.34511 1.01922 1.20071 0.98897 0.91555 0.91530 1.19609 0.95580 0.94302 0.94776 1.21591 0.94555 0.99466 0.98391 1.21116 0.98822 0.92176 0.97582 1.21142 0.98991 1.01003 0.96921 1.17622 0.98101 0.85607 0.91496 1.91465 1.93828 1.57997 1.69175 1.20872 1.01626 0.92773 1.02345 1.23135 1.01365 1.00533 0.93858 1.23185 0.91840 1.01959 1.02400 0.93421 0.93028 0.92404 0.92583 0.92448 0.96656 0.96588 0.93067 0.82044 0.83468 0.84498 0.85100 0.85083 0.87701 0.88823 0.88935 0.87719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.89 37.16 0.33 -1.67 16 2 C 0.08 1.33 2.01 -67.71 -0.14 1.20 16 3 H 0.04 0.80 5.83 -51.93 -0.30 0.50 16 4 C -0.12 -2.28 4.79 -26.73 -0.13 -2.40 16 5 C 0.02 0.44 3.51 -27.88 -0.10 0.34 16 6 C -0.52 -14.09 9.11 -34.44 -0.31 -14.40 16 7 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.89 -25.57 13.29 55.43 0.74 -24.83 16 10 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 N -0.64 -10.30 6.11 -94.20 -0.58 -10.88 16 15 C 0.07 1.02 2.16 -132.75 -0.29 0.73 16 16 C -0.04 -0.60 5.02 -104.63 -0.53 -1.13 16 17 C -0.12 -2.02 7.93 -39.58 -0.31 -2.34 16 18 C -0.08 -1.21 10.04 -39.60 -0.40 -1.61 16 19 C -0.16 -2.24 10.03 -39.51 -0.40 -2.63 16 20 C 0.09 1.28 7.30 -39.42 -0.29 0.99 16 21 F -0.15 -2.03 17.27 2.25 0.04 -1.99 16 22 C -0.16 -2.15 9.10 -39.52 -0.36 -2.51 16 23 C -0.15 -1.79 9.98 -26.69 -0.27 -2.06 16 24 C -0.16 -1.82 8.31 -26.69 -0.22 -2.04 16 25 H 0.05 0.63 6.45 -51.93 -0.33 0.30 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.02 0.38 6.26 -51.93 -0.32 0.06 16 31 H 0.02 0.40 7.22 -51.93 -0.37 0.03 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.36 6.34 5.72 -39.29 -0.22 6.12 16 34 H 0.15 2.78 3.73 -52.49 -0.20 2.58 16 35 H 0.14 2.02 8.06 -52.48 -0.42 1.60 16 36 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 37 H 0.13 1.54 6.29 -52.49 -0.33 1.20 16 38 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.09 0.96 6.44 -51.93 -0.33 0.63 16 41 H 0.10 1.21 7.52 -51.93 -0.39 0.82 16 LS Contribution 327.64 15.07 4.94 4.94 Total: -1.00 -27.90 327.64 -9.12 -37.02 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -5.74 Total: 7.59 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: -3.50 Total: -28.01 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.16 Total: -35.71 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.90 -9.12 -37.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484358.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.056 kcal (2) G-P(sol) polarization free energy of solvation -27.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds