Wall clock time and date at job start Mon Mar 30 2020 02:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47237 * 2 1 4 4 C 1.52999 * 109.46590 * 240.00129 * 2 1 3 5 5 C 1.53013 * 109.46893 * 176.01061 * 4 2 1 6 6 C 1.50694 * 109.47018 * 183.00101 * 5 4 2 7 7 H 1.08004 * 120.00320 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99831 * 179.72819 * 6 5 4 9 9 N 1.31511 * 119.99979 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00072 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47152 * 359.97438 * 10 8 6 12 12 H 1.48506 * 109.46995 * 119.99479 * 10 8 6 13 13 H 1.48501 * 109.47101 * 239.99353 * 10 8 6 14 14 N 1.46898 * 109.47007 * 120.00484 * 2 1 3 15 15 C 1.46898 * 110.99825 * 280.79060 * 14 2 1 16 16 C 1.50709 * 115.55159 * 299.32735 * 15 14 2 17 17 C 1.38268 * 119.98378 * 343.06015 * 16 15 14 18 18 C 1.38220 * 120.04949 * 179.97438 * 17 16 15 19 19 C 1.38218 * 120.02420 * 0.02562 * 18 17 16 20 20 C 1.38440 * 119.97597 * 359.97438 * 19 18 17 21 21 F 1.35099 * 120.02288 * 180.02562 * 20 19 18 22 22 C 1.38170 * 119.98675 * 162.78875 * 16 15 14 23 23 C 1.53005 * 117.49952 * 153.65616 * 15 14 2 24 24 C 1.53001 * 117.50081 * 84.99819 * 15 14 2 25 25 H 1.09001 * 109.46942 * 306.54620 * 1 2 3 26 26 H 1.08998 * 109.47177 * 66.54502 * 1 2 3 27 27 H 1.08996 * 109.47329 * 186.55169 * 1 2 3 28 28 H 1.09000 * 109.47609 * 56.01333 * 4 2 1 29 29 H 1.08996 * 109.47403 * 296.00611 * 4 2 1 30 30 H 1.08999 * 109.46448 * 62.99679 * 5 4 2 31 31 H 1.08996 * 109.46621 * 302.99962 * 5 4 2 32 32 H 0.96999 * 120.00466 * 180.02562 * 9 8 6 33 33 H 1.00895 * 111.00233 * 156.84114 * 14 2 1 34 34 H 1.08001 * 119.97475 * 0.02562 * 17 16 15 35 35 H 1.08003 * 119.98463 * 179.97438 * 18 17 16 36 36 H 1.08004 * 120.00946 * 179.97438 * 19 18 17 37 37 H 1.07997 * 120.01711 * 359.97438 * 22 16 15 38 38 H 1.08994 * 117.49670 * 0.02562 * 23 15 14 39 39 H 1.09000 * 117.49897 * 145.02328 * 23 15 14 40 40 H 1.09006 * 117.50096 * 214.98534 * 24 15 14 41 41 H 1.09005 * 117.49700 * 359.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5667 -0.6349 -1.3005 6 6 4.0641 -1.2809 -2.5679 7 1 3.3616 -1.7105 -3.2668 8 6 5.4156 -1.3190 -2.8378 9 7 6.2707 -0.7912 -1.9894 10 14 6.0323 -2.1204 -4.4085 11 1 4.8777 -2.6353 -5.1877 12 1 6.7696 -1.1180 -5.2191 13 1 6.9397 -3.2452 -4.0671 14 7 2.0197 -0.6926 1.1994 15 6 1.9531 0.1831 2.3769 16 6 2.7721 1.4455 2.2954 17 6 3.7751 1.5587 1.3504 18 6 4.5267 2.7162 1.2741 19 6 4.2768 3.7617 2.1429 20 6 3.2728 3.6495 3.0894 21 9 3.0273 4.6710 3.9388 22 6 2.5167 2.4916 3.1613 23 6 1.8186 -0.4845 3.7471 24 6 0.6246 0.2505 3.1330 25 1 -0.3633 0.6120 0.8256 26 1 -0.3633 0.4090 -0.9427 27 1 -0.3634 -1.0209 0.1172 28 1 1.6194 -0.2503 -2.1378 29 1 1.7362 -1.7674 -1.2143 30 1 3.9889 -1.1523 -0.4390 31 1 3.8723 0.4112 -1.2818 32 1 7.2216 -0.8177 -2.1793 33 1 2.9567 -1.0395 1.0594 34 1 3.9708 0.7424 0.6709 35 1 5.3102 2.8033 0.5358 36 1 4.8645 4.6658 2.0833 37 1 1.7301 2.4048 3.8961 38 1 1.7801 -1.5734 3.7747 39 1 2.3222 -0.0104 4.5895 40 1 0.3431 1.2079 3.5716 41 1 -0.2001 -0.3546 2.7563 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172484358.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:02 Heat of formation + Delta-G solvation = -22.911529 kcal Electronic energy + Delta-G solvation = -21769.058920 eV Core-core repulsion = 18562.819850 eV Total energy + Delta-G solvation = -3206.239071 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.93242 -41.09453 -38.52170 -36.94188 -34.87166 -31.93885 -31.70460 -31.38956 -30.00563 -26.98927 -24.59329 -23.72542 -23.41236 -23.09173 -21.32123 -20.62040 -18.78596 -18.37014 -17.39724 -17.10564 -16.64656 -16.52179 -16.49732 -16.25657 -15.68903 -15.11670 -14.57300 -14.54288 -14.28918 -14.09417 -13.77264 -13.63068 -13.14884 -13.10096 -12.88434 -12.83143 -12.55747 -12.41677 -12.28440 -12.15139 -12.06655 -11.71468 -11.34594 -11.27886 -11.14395 -10.86295 -10.52300 -9.89647 -9.53814 -9.45786 -8.18441 -6.27540 0.11467 0.18063 1.38807 1.40502 1.52332 2.41479 2.44855 2.99055 3.12525 3.15282 3.19657 3.52847 3.74316 3.99603 4.11969 4.14687 4.18436 4.25077 4.36982 4.43703 4.52240 4.59109 4.79088 4.80658 4.84365 4.97989 5.02357 5.04122 5.06768 5.09795 5.14413 5.27588 5.33446 5.33854 5.45898 5.52435 5.56013 5.75476 5.85787 5.88904 6.22384 6.29712 6.38877 6.87852 7.41017 8.92304 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017349 B = 0.005171 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.566347 B = 5413.158993 C = 6477.623785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.088 3.912 3 H 0.030 0.970 4 C -0.104 4.104 5 C 0.032 3.968 6 C -0.542 4.542 7 H 0.054 0.946 8 C 0.007 3.993 9 N -0.925 5.925 10 Si 0.956 3.044 11 H -0.266 1.266 12 H -0.280 1.280 13 H -0.279 1.279 14 N -0.642 5.642 15 C 0.043 3.957 16 C -0.039 4.039 17 C -0.146 4.146 18 C -0.091 4.091 19 C -0.159 4.159 20 C 0.090 3.910 21 F -0.142 7.142 22 C -0.151 4.151 23 C -0.141 4.141 24 C -0.137 4.137 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.054 0.946 30 H -0.001 1.001 31 H -0.007 1.007 32 H 0.262 0.738 33 H 0.340 0.660 34 H 0.117 0.883 35 H 0.131 0.869 36 H 0.153 0.847 37 H 0.158 0.842 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.112 0.888 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.451 6.104 11.843 16.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.021 4.021 3 H 0.048 0.952 4 C -0.142 4.142 5 C -0.005 4.005 6 C -0.580 4.580 7 H 0.072 0.928 8 C -0.192 4.192 9 N -0.565 5.565 10 Si 0.782 3.218 11 H -0.190 1.190 12 H -0.206 1.206 13 H -0.205 1.205 14 N -0.273 5.273 15 C -0.050 4.050 16 C -0.041 4.041 17 C -0.164 4.164 18 C -0.109 4.109 19 C -0.177 4.177 20 C 0.071 3.929 21 F -0.121 7.121 22 C -0.170 4.170 23 C -0.178 4.178 24 C -0.174 4.174 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.017 0.983 31 H 0.012 0.988 32 H 0.071 0.929 33 H 0.161 0.839 34 H 0.135 0.865 35 H 0.149 0.851 36 H 0.170 0.830 37 H 0.175 0.825 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.130 0.870 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.898 5.835 12.002 16.615 hybrid contribution 1.745 0.384 -1.207 2.156 sum -8.153 6.219 10.795 14.889 Atomic orbital electron populations 1.21774 0.93269 1.02258 1.01548 1.21532 0.96371 0.95242 0.88946 0.95167 1.21672 0.96653 0.99775 0.96117 1.19001 0.91626 0.94738 0.95185 1.21696 0.92316 1.37452 1.06518 0.92769 1.25825 0.97335 0.96049 0.99943 1.70062 1.02435 1.46392 1.37643 0.85532 0.78362 0.78253 0.79701 1.18968 1.20566 1.20510 1.60618 1.29456 1.34908 1.02341 1.20239 1.01343 0.91617 0.91756 1.19651 0.94993 0.95106 0.94372 1.21454 0.96386 0.99255 0.99328 1.21117 0.98973 0.92587 0.98261 1.21291 0.99110 1.01125 0.96213 1.17705 0.98024 0.85830 0.91373 1.91478 1.93767 1.57832 1.68974 1.21059 1.01847 0.91891 1.02182 1.23227 1.01219 1.00772 0.92586 1.23291 0.90833 1.02787 1.00482 0.91823 0.92437 0.92023 0.92788 0.92736 0.98264 0.98826 0.92926 0.83900 0.86515 0.85121 0.82958 0.82499 0.87600 0.87449 0.86991 0.87288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.56 8.89 71.98 0.64 -2.92 16 2 C 0.09 2.98 2.01 44.92 0.09 3.07 16 3 H 0.03 1.11 5.83 -2.39 -0.01 1.10 16 4 C -0.10 -4.23 4.79 30.60 0.15 -4.09 16 5 C 0.03 1.58 3.51 29.85 0.10 1.69 16 6 C -0.54 -30.28 9.11 25.60 0.23 -30.05 16 7 H 0.05 2.97 7.74 -2.91 -0.02 2.94 16 8 C 0.01 0.38 5.46 84.66 0.46 0.84 16 9 N -0.93 -54.45 13.29 21.45 0.28 -54.17 16 10 Si 0.96 43.92 29.54 68.60 2.03 45.95 16 11 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 13 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 14 N -0.64 -20.65 6.11 -451.95 -2.76 -23.41 16 15 C 0.04 1.16 2.16 2.79 0.01 1.17 16 16 C -0.04 -1.14 5.02 -19.87 -0.10 -1.24 16 17 C -0.15 -5.05 7.93 22.27 0.18 -4.87 16 18 C -0.09 -2.90 10.04 22.26 0.22 -2.67 16 19 C -0.16 -4.27 10.03 22.31 0.22 -4.05 16 20 C 0.09 2.36 7.30 22.38 0.16 2.53 16 21 F -0.14 -3.59 17.27 44.97 0.78 -2.81 16 22 C -0.15 -3.80 9.10 22.31 0.20 -3.59 16 23 C -0.14 -3.00 9.98 30.62 0.31 -2.69 16 24 C -0.14 -2.75 8.31 30.62 0.25 -2.50 16 25 H 0.06 1.53 6.45 -2.39 -0.02 1.51 16 26 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.00 -0.04 6.26 -2.39 -0.01 -0.06 16 31 H -0.01 -0.35 7.22 -2.39 -0.02 -0.37 16 32 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 33 H 0.34 12.72 5.72 -89.70 -0.51 12.20 16 34 H 0.12 4.78 3.73 -2.91 -0.01 4.77 16 35 H 0.13 4.16 8.06 -2.91 -0.02 4.13 16 36 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 37 H 0.16 3.07 6.29 -2.91 -0.02 3.05 16 38 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.11 1.83 6.44 -2.38 -0.02 1.82 16 41 H 0.11 2.15 7.52 -2.38 -0.02 2.13 16 Total: -1.00 -60.59 327.64 3.99 -56.60 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 0.53 Total: 27.22 kcal Atomic # 6 Polarization: -52.51 SS G_CDS: 3.13 Total: -49.37 kcal Atomic # 7 Polarization: -75.10 SS G_CDS: -2.48 Total: -77.58 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.78 Total: -2.81 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -60.59 3.99 -56.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484358.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.691 kcal (2) G-P(sol) polarization free energy of solvation -60.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds