Wall clock time and date at job start Mon Mar 30 2020 02:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46917 * 2 1 4 4 C 1.52989 * 109.47424 * 120.00625 * 2 1 3 5 5 C 1.53000 * 109.47596 * 184.99918 * 4 2 1 6 6 C 1.50690 * 109.47646 * 180.02562 * 5 4 2 7 7 H 1.08001 * 120.00131 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00354 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99527 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00193 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46894 * 60.00173 * 10 8 6 12 12 H 1.48500 * 109.47185 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47314 * 300.00268 * 10 8 6 14 14 N 1.46907 * 109.47019 * 240.00846 * 2 1 3 15 15 C 1.46895 * 111.00169 * 84.97950 * 14 2 1 16 16 H 1.09007 * 110.27191 * 323.46980 * 15 14 2 17 17 C 1.54347 * 110.30237 * 85.54336 * 15 14 2 18 18 C 1.54344 * 102.39225 * 92.56672 * 17 15 14 19 19 C 1.51368 * 105.17063 * 26.35862 * 18 17 15 20 20 C 1.38462 * 130.36861 * 162.79099 * 19 18 17 21 21 C 1.38324 * 120.20093 * 180.02562 * 20 19 18 22 22 F 1.35103 * 120.06225 * 180.02562 * 21 20 19 23 23 C 1.38478 * 119.87873 * 359.97438 * 21 20 19 24 24 C 1.38064 * 119.90750 * 0.02562 * 23 21 20 25 25 C 1.38322 * 120.32011 * 0.02562 * 24 23 21 26 26 H 1.08991 * 109.47315 * 184.70653 * 1 2 3 27 27 H 1.09001 * 109.46872 * 304.70821 * 1 2 3 28 28 H 1.09001 * 109.47169 * 64.70410 * 1 2 3 29 29 H 1.09002 * 109.47297 * 304.99743 * 4 2 1 30 30 H 1.08996 * 109.47479 * 64.99773 * 4 2 1 31 31 H 1.09002 * 109.46654 * 300.00218 * 5 4 2 32 32 H 1.09006 * 109.46929 * 59.99318 * 5 4 2 33 33 H 0.97004 * 119.99511 * 180.02562 * 9 8 6 34 34 H 1.00896 * 110.99331 * 321.02815 * 14 2 1 35 35 H 1.08997 * 110.82345 * 210.79407 * 17 15 14 36 36 H 1.08994 * 110.82037 * 334.34182 * 17 15 14 37 37 H 1.09001 * 110.30025 * 145.28012 * 18 17 15 38 38 H 1.08994 * 110.30664 * 267.42861 * 18 17 15 39 39 H 1.08006 * 119.90355 * 0.03047 * 20 19 18 40 40 H 1.07998 * 120.05087 * 180.02562 * 23 21 20 41 41 H 1.08000 * 119.87856 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2490 5 6 3.5649 -0.6134 1.3135 6 6 4.0673 -1.3244 2.5435 7 1 3.3689 -1.8049 3.2126 8 6 5.4187 -1.3616 2.8147 9 7 6.2691 -0.7761 2.0001 10 14 6.0414 -2.2424 4.3397 11 1 5.6479 -3.6731 4.2803 12 1 7.5214 -2.1377 4.4022 13 1 5.4499 -1.6162 5.5493 14 7 2.0197 -0.6924 -1.1996 15 6 2.0820 0.2227 -2.3470 16 1 1.2464 0.9221 -2.3181 17 6 3.4219 0.9889 -2.3488 18 6 4.3123 0.0971 -3.2399 19 6 3.3525 -0.6309 -4.1564 20 6 3.5828 -1.3028 -5.3449 21 6 2.5345 -1.9016 -6.0202 22 9 2.7624 -2.5569 -7.1794 23 6 1.2510 -1.8290 -5.5052 24 6 1.0217 -1.1589 -4.3201 25 6 2.0682 -0.5585 -3.6436 26 1 -0.3633 -1.0241 0.0843 27 1 -0.3633 0.5852 0.8448 28 1 -0.3633 0.4391 -0.9291 29 1 1.6055 -0.2619 2.1369 30 1 1.7517 -1.7715 1.2054 31 1 3.9994 -1.0728 0.4257 32 1 3.8532 0.4369 1.3572 33 1 7.2199 -0.8026 2.1907 34 1 1.4497 -1.4979 -1.4100 35 1 3.3015 1.9789 -2.7887 36 1 3.8295 1.0589 -1.3404 37 1 4.9995 0.7107 -3.8223 38 1 4.8658 -0.6156 -2.6286 39 1 4.5840 -1.3597 -5.7461 40 1 0.4306 -2.2958 -6.0299 41 1 0.0205 -1.1022 -3.9191 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172485180.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:41 Heat of formation + Delta-G solvation = -39.075305 kcal Electronic energy + Delta-G solvation = -21287.180240 eV Core-core repulsion = 18080.240255 eV Total energy + Delta-G solvation = -3206.939985 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.95148 -40.20941 -37.18323 -34.89323 -33.02608 -31.70410 -30.07960 -28.77698 -28.63286 -25.77011 -24.91401 -22.97471 -21.52061 -21.17724 -20.22568 -19.59763 -17.11814 -16.60524 -16.19603 -16.12283 -15.67523 -15.40790 -14.49593 -14.40886 -14.29723 -13.74916 -13.56904 -13.18509 -12.88070 -12.73400 -12.39258 -12.28793 -12.15394 -11.76416 -11.55351 -11.27138 -11.16479 -11.03929 -10.84784 -10.81030 -10.67260 -10.45789 -10.19701 -9.63085 -9.21368 -8.97757 -8.90790 -8.57902 -8.22163 -7.85324 -5.88673 -3.89226 1.07599 1.18202 3.38644 3.42955 3.45535 3.48258 4.07961 4.37662 4.54354 4.56802 4.62778 4.83900 5.10751 5.13921 5.26280 5.30712 5.39346 5.47197 5.51955 5.60282 5.70047 5.77259 5.84855 5.94318 6.03271 6.08059 6.09026 6.20253 6.25797 6.34986 6.39576 6.54461 6.58702 6.68716 6.84087 6.89270 7.30797 7.49471 7.78495 7.84607 8.07855 8.22989 8.58168 9.19233 9.73298 11.22318 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019537 B = 0.004147 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.816711 B = 6750.982635 C = 7472.401340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.083 3.917 3 H 0.074 0.926 4 C -0.098 4.098 5 C 0.031 3.969 6 C -0.519 4.519 7 H 0.049 0.951 8 C 0.058 3.942 9 N -0.895 5.895 10 Si 0.886 3.114 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.279 1.279 14 N -0.658 5.658 15 C 0.129 3.871 16 H 0.049 0.951 17 C -0.113 4.113 18 C -0.078 4.078 19 C -0.041 4.041 20 C -0.149 4.149 21 C 0.099 3.901 22 F -0.143 7.143 23 C -0.162 4.162 24 C -0.074 4.074 25 C -0.109 4.109 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.043 0.957 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.033 0.967 32 H 0.007 0.993 33 H 0.258 0.742 34 H 0.337 0.663 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.133 2.359 -14.668 17.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.026 4.026 3 H 0.092 0.908 4 C -0.136 4.136 5 C -0.006 4.006 6 C -0.558 4.558 7 H 0.068 0.932 8 C -0.143 4.143 9 N -0.534 5.534 10 Si 0.714 3.286 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.288 5.288 15 C 0.020 3.980 16 H 0.067 0.933 17 C -0.151 4.151 18 C -0.115 4.115 19 C -0.042 4.042 20 C -0.168 4.168 21 C 0.079 3.921 22 F -0.121 7.121 23 C -0.180 4.180 24 C -0.093 4.093 25 C -0.110 4.110 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.025 0.975 33 H 0.068 0.932 34 H 0.156 0.844 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.264 2.457 -14.556 17.428 hybrid contribution -0.555 -0.662 0.360 0.936 sum -9.819 1.795 -14.196 17.354 Atomic orbital electron populations 1.22546 0.98667 1.01726 1.01078 1.21803 0.90871 0.98488 0.91483 0.90826 1.21623 1.00678 0.98352 0.92957 1.18987 0.88229 0.96396 0.97008 1.21317 0.91827 1.34077 1.08543 0.93239 1.24972 0.97120 0.95749 0.96442 1.69958 1.02171 1.44352 1.36962 0.86764 0.77583 0.80324 0.83911 1.20402 1.21407 1.20450 1.60675 1.57661 1.08467 1.02034 1.20929 0.97684 0.92827 0.86569 0.93293 1.22376 0.94232 0.96604 1.01857 1.21079 0.96625 0.98221 0.95567 1.20638 0.95793 0.94922 0.92861 1.20568 0.98917 1.01044 0.96250 1.17505 0.94273 0.96589 0.83692 1.91484 1.95467 1.78928 1.46269 1.20919 0.95557 1.03491 0.98069 1.20386 0.98790 0.96240 0.93844 1.20764 0.93592 0.99722 0.96876 0.92733 0.92277 0.93771 0.93534 0.93514 0.94853 0.97506 0.93225 0.84447 0.91544 0.88415 0.90883 0.88402 0.84982 0.84886 0.85591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 9.16 37.16 0.34 -1.98 16 2 C 0.08 1.32 2.37 -67.71 -0.16 1.16 16 3 H 0.07 1.21 7.57 -51.93 -0.39 0.82 16 4 C -0.10 -1.97 4.83 -26.74 -0.13 -2.10 16 5 C 0.03 0.78 4.86 -27.89 -0.14 0.65 16 6 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 16 7 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -26.88 13.29 55.43 0.74 -26.15 16 10 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 N -0.66 -10.09 5.50 -99.86 -0.55 -10.64 16 15 C 0.13 1.73 2.96 -67.83 -0.20 1.53 16 16 H 0.05 0.61 7.17 -51.93 -0.37 0.24 16 17 C -0.11 -1.56 6.57 -25.32 -0.17 -1.72 16 18 C -0.08 -1.06 6.77 -26.85 -0.18 -1.24 16 19 C -0.04 -0.55 6.14 -104.12 -0.64 -1.19 16 20 C -0.15 -1.87 10.02 -39.47 -0.40 -2.27 16 21 C 0.10 1.22 7.30 -39.46 -0.29 0.94 16 22 F -0.14 -1.81 17.27 2.25 0.04 -1.77 16 23 C -0.16 -1.79 10.03 -39.56 -0.40 -2.19 16 24 C -0.07 -0.83 10.02 -39.61 -0.40 -1.22 16 25 C -0.11 -1.39 5.49 -104.17 -0.57 -1.97 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.04 0.50 7.39 -51.93 -0.38 0.12 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.03 0.91 7.75 -51.93 -0.40 0.50 16 32 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.34 4.89 8.19 -39.29 -0.32 4.57 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.10 1.62 7.86 -51.93 -0.41 1.21 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 39 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 40 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 339.29 15.07 5.11 5.11 Total: -1.00 -29.99 339.29 -9.89 -39.88 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -6.47 Total: 1.83 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: -3.73 Total: -25.14 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.19 Total: -36.79 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.99 -9.89 -39.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172485180.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.804 kcal (2) G-P(sol) polarization free energy of solvation -29.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds