Wall clock time and date at job start Mon Mar 30 2020 02:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46917 * 2 1 4 4 C 1.52989 * 109.47424 * 120.00625 * 2 1 3 5 5 C 1.53000 * 109.47596 * 184.99918 * 4 2 1 6 6 C 1.50690 * 109.47646 * 180.02562 * 5 4 2 7 7 H 1.08001 * 120.00131 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00354 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99527 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00193 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46894 * 60.00173 * 10 8 6 12 12 H 1.48500 * 109.47185 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47314 * 300.00268 * 10 8 6 14 14 N 1.46907 * 109.47019 * 240.00846 * 2 1 3 15 15 C 1.46895 * 111.00169 * 84.97950 * 14 2 1 16 16 H 1.09007 * 110.27191 * 323.46980 * 15 14 2 17 17 C 1.54347 * 110.30237 * 85.54336 * 15 14 2 18 18 C 1.54344 * 102.39225 * 92.56672 * 17 15 14 19 19 C 1.51368 * 105.17063 * 26.35862 * 18 17 15 20 20 C 1.38462 * 130.36861 * 162.79099 * 19 18 17 21 21 C 1.38324 * 120.20093 * 180.02562 * 20 19 18 22 22 F 1.35103 * 120.06225 * 180.02562 * 21 20 19 23 23 C 1.38478 * 119.87873 * 359.97438 * 21 20 19 24 24 C 1.38064 * 119.90750 * 0.02562 * 23 21 20 25 25 C 1.38322 * 120.32011 * 0.02562 * 24 23 21 26 26 H 1.08991 * 109.47315 * 184.70653 * 1 2 3 27 27 H 1.09001 * 109.46872 * 304.70821 * 1 2 3 28 28 H 1.09001 * 109.47169 * 64.70410 * 1 2 3 29 29 H 1.09002 * 109.47297 * 304.99743 * 4 2 1 30 30 H 1.08996 * 109.47479 * 64.99773 * 4 2 1 31 31 H 1.09002 * 109.46654 * 300.00218 * 5 4 2 32 32 H 1.09006 * 109.46929 * 59.99318 * 5 4 2 33 33 H 0.97004 * 119.99511 * 180.02562 * 9 8 6 34 34 H 1.00896 * 110.99331 * 321.02815 * 14 2 1 35 35 H 1.08997 * 110.82345 * 210.79407 * 17 15 14 36 36 H 1.08994 * 110.82037 * 334.34182 * 17 15 14 37 37 H 1.09001 * 110.30025 * 145.28012 * 18 17 15 38 38 H 1.08994 * 110.30664 * 267.42861 * 18 17 15 39 39 H 1.08006 * 119.90355 * 0.03047 * 20 19 18 40 40 H 1.07998 * 120.05087 * 180.02562 * 23 21 20 41 41 H 1.08000 * 119.87856 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2490 5 6 3.5649 -0.6134 1.3135 6 6 4.0673 -1.3244 2.5435 7 1 3.3689 -1.8049 3.2126 8 6 5.4187 -1.3616 2.8147 9 7 6.2691 -0.7761 2.0001 10 14 6.0414 -2.2424 4.3397 11 1 5.6479 -3.6731 4.2803 12 1 7.5214 -2.1377 4.4022 13 1 5.4499 -1.6162 5.5493 14 7 2.0197 -0.6924 -1.1996 15 6 2.0820 0.2227 -2.3470 16 1 1.2464 0.9221 -2.3181 17 6 3.4219 0.9889 -2.3488 18 6 4.3123 0.0971 -3.2399 19 6 3.3525 -0.6309 -4.1564 20 6 3.5828 -1.3028 -5.3449 21 6 2.5345 -1.9016 -6.0202 22 9 2.7624 -2.5569 -7.1794 23 6 1.2510 -1.8290 -5.5052 24 6 1.0217 -1.1589 -4.3201 25 6 2.0682 -0.5585 -3.6436 26 1 -0.3633 -1.0241 0.0843 27 1 -0.3633 0.5852 0.8448 28 1 -0.3633 0.4391 -0.9291 29 1 1.6055 -0.2619 2.1369 30 1 1.7517 -1.7715 1.2054 31 1 3.9994 -1.0728 0.4257 32 1 3.8532 0.4369 1.3572 33 1 7.2199 -0.8026 2.1907 34 1 1.4497 -1.4979 -1.4100 35 1 3.3015 1.9789 -2.7887 36 1 3.8295 1.0589 -1.3404 37 1 4.9995 0.7107 -3.8223 38 1 4.8658 -0.6156 -2.6286 39 1 4.5840 -1.3597 -5.7461 40 1 0.4306 -2.2958 -6.0299 41 1 0.0205 -1.1022 -3.9191 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172485180.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:40 Heat of formation + Delta-G solvation = -54.809720 kcal Electronic energy + Delta-G solvation = -21287.862535 eV Core-core repulsion = 18080.240255 eV Total energy + Delta-G solvation = -3207.622280 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.91184 -41.21735 -38.39838 -36.12442 -34.96795 -32.97105 -31.60005 -29.96458 -29.71871 -27.07412 -26.59734 -23.95090 -23.20717 -22.23166 -21.49522 -20.90908 -18.33786 -18.07799 -17.56870 -17.31561 -16.68255 -16.49433 -16.44833 -15.70561 -15.31634 -14.87947 -14.58278 -14.52474 -14.24582 -14.01068 -13.87454 -13.60485 -13.23618 -13.13772 -12.97066 -12.81843 -12.71331 -12.36830 -12.24825 -12.13237 -11.92216 -11.77843 -11.65559 -11.46245 -11.17551 -10.91494 -10.44663 -9.91665 -9.57617 -9.01577 -8.10982 -6.20487 0.11657 0.26105 1.40720 1.43415 1.50958 2.45336 2.52902 3.11416 3.21400 3.35823 3.53770 3.57597 3.97206 4.06085 4.14001 4.19947 4.29937 4.31525 4.39498 4.50968 4.63027 4.75632 4.82110 4.83977 4.97466 5.01386 5.04452 5.08742 5.13260 5.16037 5.20080 5.24888 5.33172 5.41107 5.51411 5.62282 5.63122 5.90889 5.94472 6.08011 6.32816 6.38939 6.65584 6.99438 7.47124 8.99666 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019537 B = 0.004147 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.816711 B = 6750.982635 C = 7472.401340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.092 3.908 3 H 0.064 0.936 4 C -0.088 4.088 5 C 0.042 3.958 6 C -0.544 4.544 7 H 0.053 0.947 8 C 0.002 3.998 9 N -0.930 5.930 10 Si 0.956 3.044 11 H -0.270 1.270 12 H -0.284 1.284 13 H -0.268 1.268 14 N -0.677 5.677 15 C 0.135 3.865 16 H 0.067 0.933 17 C -0.114 4.114 18 C -0.076 4.076 19 C -0.058 4.058 20 C -0.157 4.157 21 C 0.087 3.913 22 F -0.146 7.146 23 C -0.154 4.154 24 C -0.068 4.068 25 C -0.115 4.115 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.044 0.956 31 H 0.005 0.995 32 H -0.022 1.022 33 H 0.260 0.740 34 H 0.343 0.657 35 H 0.088 0.912 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.139 0.861 40 H 0.160 0.840 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.240 1.927 -15.011 19.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 H 0.082 0.918 4 C -0.126 4.126 5 C 0.005 3.995 6 C -0.582 4.582 7 H 0.071 0.929 8 C -0.195 4.195 9 N -0.570 5.570 10 Si 0.781 3.219 11 H -0.195 1.195 12 H -0.209 1.209 13 H -0.193 1.193 14 N -0.309 5.309 15 C 0.027 3.973 16 H 0.085 0.915 17 C -0.152 4.152 18 C -0.113 4.113 19 C -0.059 4.059 20 C -0.176 4.176 21 C 0.068 3.932 22 F -0.125 7.125 23 C -0.173 4.173 24 C -0.086 4.086 25 C -0.116 4.116 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.024 0.976 32 H -0.003 1.003 33 H 0.069 0.931 34 H 0.162 0.838 35 H 0.107 0.893 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.157 0.843 40 H 0.178 0.822 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -11.388 2.022 -14.900 18.862 hybrid contribution 0.142 -0.530 0.427 0.695 sum -11.247 1.492 -14.473 18.389 Atomic orbital electron populations 1.22398 0.95392 1.02523 1.02513 1.21548 0.93274 0.97102 0.89857 0.91777 1.21453 0.96672 0.98919 0.95601 1.18792 0.92055 0.93821 0.94848 1.21807 0.92436 1.34406 1.09600 0.92919 1.25881 0.97421 0.96490 0.99755 1.70103 1.02468 1.45549 1.38884 0.85649 0.77024 0.79274 0.79964 1.19509 1.20946 1.19303 1.60524 1.58381 1.09326 1.02695 1.20861 0.97599 0.92739 0.86150 0.91505 1.22348 0.94829 0.98051 0.99932 1.20975 0.96965 0.97833 0.95533 1.20600 0.96006 0.95898 0.93356 1.20686 0.99662 1.01054 0.96179 1.17692 0.94921 0.96858 0.83756 1.91476 1.95558 1.79011 1.46437 1.21243 0.95629 1.02564 0.97834 1.20666 0.99532 0.95025 0.93419 1.20794 0.93950 1.00250 0.96599 0.92089 0.91771 0.91544 0.93345 0.93719 0.97621 1.00328 0.93129 0.83805 0.89323 0.92048 0.89421 0.91692 0.84334 0.82238 0.82763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.88 9.16 71.98 0.66 -3.22 16 2 C 0.09 2.86 2.37 44.91 0.11 2.97 16 3 H 0.06 2.12 7.57 -2.39 -0.02 2.10 16 4 C -0.09 -3.58 4.83 30.59 0.15 -3.43 16 5 C 0.04 2.23 4.86 29.84 0.15 2.37 16 6 C -0.54 -31.69 9.11 25.60 0.23 -31.46 16 7 H 0.05 2.96 7.74 -2.91 -0.02 2.93 16 8 C 0.00 0.12 5.46 84.66 0.46 0.58 16 9 N -0.93 -57.53 13.29 21.45 0.28 -57.24 16 10 Si 0.96 45.24 29.54 68.60 2.03 47.27 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 13 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 14 N -0.68 -20.62 5.50 -469.85 -2.58 -23.20 16 15 C 0.14 3.50 2.96 44.84 0.13 3.63 16 16 H 0.07 1.50 7.17 -2.38 -0.02 1.48 16 17 C -0.11 -3.22 6.57 31.51 0.21 -3.02 16 18 C -0.08 -2.16 6.77 30.52 0.21 -1.95 16 19 C -0.06 -1.52 6.14 -19.54 -0.12 -1.64 16 20 C -0.16 -3.87 10.02 22.34 0.22 -3.64 16 21 C 0.09 2.02 7.30 22.35 0.16 2.18 16 22 F -0.15 -3.50 17.27 44.97 0.78 -2.72 16 23 C -0.15 -2.97 10.03 22.29 0.22 -2.74 16 24 C -0.07 -1.31 10.02 22.25 0.22 -1.09 16 25 C -0.12 -2.78 5.49 -19.57 -0.11 -2.89 16 26 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 27 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.07 1.25 7.39 -2.39 -0.02 1.24 16 29 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.04 1.80 8.14 -2.39 -0.02 1.79 16 31 H 0.01 0.31 7.75 -2.39 -0.02 0.29 16 32 H -0.02 -1.26 8.14 -2.38 -0.02 -1.27 16 33 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 34 H 0.34 9.53 8.19 -89.70 -0.73 8.80 16 35 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.06 2.19 7.86 -2.39 -0.02 2.17 16 37 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.14 3.08 8.06 -2.91 -0.02 3.05 16 40 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 41 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -66.22 339.29 3.69 -62.53 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.28 Total: 16.73 kcal Atomic # 6 Polarization: -46.26 SS G_CDS: 2.91 Total: -43.35 kcal Atomic # 7 Polarization: -78.15 SS G_CDS: -2.30 Total: -80.45 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.78 Total: -2.72 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -66.22 3.69 -62.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172485180.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.720 kcal (2) G-P(sol) polarization free energy of solvation -66.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds