Wall clock time and date at job start Mon Mar 30 2020 02:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46947 * 2 1 4 4 C 1.52997 * 109.47466 * 120.00393 * 2 1 3 5 5 C 1.53002 * 109.46882 * 185.00012 * 4 2 1 6 6 C 1.50704 * 109.46945 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99927 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00047 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99725 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00128 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47139 * 60.00125 * 10 8 6 12 12 H 1.48505 * 109.47183 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.47153 * 300.00310 * 10 8 6 14 14 N 1.46901 * 109.47032 * 240.00825 * 2 1 3 15 15 C 1.46901 * 111.00254 * 84.86203 * 14 2 1 16 16 H 1.09000 * 110.26750 * 322.87276 * 15 14 2 17 17 C 1.54341 * 110.30122 * 84.94779 * 15 14 2 18 18 C 1.54351 * 102.39515 * 145.27584 * 17 15 14 19 19 C 1.51367 * 105.16626 * 333.65268 * 18 17 15 20 20 C 1.38229 * 109.76543 * 17.18025 * 19 18 17 21 21 C 1.38464 * 119.86711 * 180.02562 * 20 19 18 22 22 C 1.38155 * 120.26981 * 0.02562 * 21 20 19 23 23 C 1.38173 * 119.96165 * 359.97251 * 22 21 20 24 24 C 1.38369 * 119.90954 * 359.97438 * 23 22 21 25 25 F 1.35100 * 119.92097 * 180.02562 * 24 23 22 26 26 H 1.08989 * 109.47670 * 64.63731 * 1 2 3 27 27 H 1.08999 * 109.46638 * 184.63873 * 1 2 3 28 28 H 1.09001 * 109.47007 * 304.63298 * 1 2 3 29 29 H 1.09001 * 109.47224 * 64.99987 * 4 2 1 30 30 H 1.08994 * 109.46950 * 304.99726 * 4 2 1 31 31 H 1.09001 * 109.47212 * 59.99968 * 5 4 2 32 32 H 1.09003 * 109.47222 * 299.99795 * 5 4 2 33 33 H 0.97009 * 119.99574 * 180.02562 * 9 8 6 34 34 H 1.00899 * 110.99985 * 208.82158 * 14 2 1 35 35 H 1.08998 * 110.82188 * 263.50259 * 17 15 14 36 36 H 1.09003 * 110.82382 * 27.04877 * 17 15 14 37 37 H 1.08994 * 110.29931 * 92.57049 * 18 17 15 38 38 H 1.08994 * 110.30221 * 214.63314 * 18 17 15 39 39 H 1.08008 * 119.86283 * 179.97438 * 21 20 19 40 40 H 1.07997 * 120.01462 * 180.02562 * 22 21 20 41 41 H 1.08002 * 120.04069 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6133 1.3135 6 6 4.0673 -1.3232 2.5442 7 1 3.3689 -1.8038 3.2133 8 6 5.4186 -1.3602 2.8155 9 7 6.2691 -0.7754 2.0003 10 14 6.0414 -2.2407 4.3406 11 1 5.6482 -3.6715 4.2813 12 1 7.5214 -2.1358 4.4031 13 1 5.4497 -1.6145 5.5501 14 7 2.0196 -0.6923 -1.1996 15 6 2.0793 0.2221 -2.3477 16 1 1.2368 0.9132 -2.3242 17 6 3.4116 1.0013 -2.3430 18 6 3.7187 1.1417 -3.8491 19 6 3.0249 -0.0324 -4.5058 20 6 2.0830 -0.5611 -3.6432 21 6 1.3228 -1.6498 -4.0355 22 6 1.5022 -2.2103 -5.2854 23 6 2.4430 -1.6835 -6.1494 24 6 3.2036 -0.5949 -5.7607 25 9 4.1233 -0.0793 -6.6055 26 1 -0.3634 0.4401 -0.9285 27 1 -0.3632 -1.0243 0.0831 28 1 -0.3633 0.5840 0.8456 29 1 1.7517 -1.7716 1.2054 30 1 1.6055 -0.2618 2.1369 31 1 3.8532 0.4370 1.3572 32 1 3.9995 -1.0727 0.4257 33 1 7.2199 -0.8017 2.1910 34 1 2.9182 -1.1185 -1.0296 35 1 3.2862 1.9802 -1.8802 36 1 4.1924 0.4309 -1.8398 37 1 3.3170 2.0802 -4.2310 38 1 4.7937 1.0927 -4.0220 39 1 0.5872 -2.0630 -3.3612 40 1 0.9066 -3.0592 -5.5873 41 1 2.5840 -2.1204 -7.1270 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172485930.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:46 Heat of formation + Delta-G solvation = -56.436785 kcal Electronic energy + Delta-G solvation = -21333.914886 eV Core-core repulsion = 18126.222051 eV Total energy + Delta-G solvation = -3207.692835 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.85645 -41.16072 -38.52292 -36.40137 -34.99558 -32.73993 -31.31069 -30.47009 -29.70189 -27.24371 -26.44603 -23.69166 -23.27610 -22.19807 -21.66342 -21.00549 -18.60630 -18.17699 -17.37049 -17.06178 -16.59112 -16.54068 -16.48619 -15.86676 -15.53701 -15.03227 -14.66228 -14.42191 -14.24334 -13.92150 -13.77236 -13.46907 -13.27501 -13.11515 -12.95007 -12.81232 -12.79958 -12.48372 -12.30804 -12.26354 -12.11689 -11.92893 -11.74173 -11.55913 -11.26947 -10.92783 -10.53092 -9.66562 -9.55653 -9.29230 -8.19483 -6.29592 0.23958 0.25133 1.39665 1.41888 1.49717 2.41030 2.61903 3.13150 3.18060 3.28220 3.50627 3.55123 3.91608 4.04759 4.15231 4.17962 4.22642 4.37956 4.43470 4.52884 4.54867 4.59972 4.78133 4.81582 4.88427 4.95607 5.01678 5.05559 5.11629 5.15250 5.19193 5.22994 5.27063 5.43170 5.48563 5.56327 5.60783 5.74305 5.86217 5.98022 6.24454 6.27724 6.41757 6.87144 7.39504 8.91368 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019148 B = 0.004178 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.918802 B = 6700.191137 C = 7330.053638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.088 3.912 3 H 0.033 0.967 4 C -0.102 4.102 5 C 0.030 3.970 6 C -0.543 4.543 7 H 0.057 0.943 8 C 0.003 3.997 9 N -0.931 5.931 10 Si 0.959 3.041 11 H -0.268 1.268 12 H -0.285 1.285 13 H -0.268 1.268 14 N -0.675 5.675 15 C 0.129 3.871 16 H 0.106 0.894 17 C -0.148 4.148 18 C -0.070 4.070 19 C -0.149 4.149 20 C -0.064 4.064 21 C -0.100 4.100 22 C -0.092 4.092 23 C -0.153 4.153 24 C 0.082 3.918 25 F -0.152 7.152 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.057 0.943 31 H -0.015 1.015 32 H -0.003 1.003 33 H 0.262 0.738 34 H 0.340 0.660 35 H 0.085 0.915 36 H 0.052 0.948 37 H 0.097 0.903 38 H 0.069 0.931 39 H 0.140 0.860 40 H 0.165 0.835 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.543 1.017 -14.805 18.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.021 4.021 3 H 0.051 0.949 4 C -0.140 4.140 5 C -0.008 4.008 6 C -0.581 4.581 7 H 0.076 0.924 8 C -0.195 4.195 9 N -0.571 5.571 10 Si 0.784 3.216 11 H -0.193 1.193 12 H -0.210 1.210 13 H -0.192 1.192 14 N -0.307 5.307 15 C 0.019 3.981 16 H 0.124 0.876 17 C -0.188 4.188 18 C -0.108 4.108 19 C -0.150 4.150 20 C -0.065 4.065 21 C -0.118 4.118 22 C -0.109 4.109 23 C -0.172 4.172 24 C 0.063 3.937 25 F -0.131 7.131 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.004 0.996 32 H 0.015 0.985 33 H 0.071 0.929 34 H 0.160 0.840 35 H 0.103 0.897 36 H 0.071 0.929 37 H 0.116 0.884 38 H 0.088 0.912 39 H 0.158 0.842 40 H 0.183 0.817 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -11.958 0.817 -14.994 19.196 hybrid contribution 1.999 0.368 0.880 2.215 sum -9.959 1.185 -14.114 17.315 Atomic orbital electron populations 1.21724 0.93033 1.02207 1.01609 1.21540 0.96359 0.95224 0.89026 0.94876 1.21645 0.96079 0.99840 0.96427 1.18980 0.92160 0.94444 0.95172 1.21682 0.92473 1.34565 1.09387 0.92436 1.25908 0.97393 0.96326 0.99881 1.70082 1.02675 1.45395 1.38964 0.85587 0.76973 0.79321 0.79702 1.19279 1.21005 1.19246 1.60673 1.33796 1.32037 1.04192 1.21097 0.97138 0.92000 0.87840 0.87607 1.23010 0.97874 1.01768 0.96113 1.20901 1.00161 0.95979 0.93738 1.20758 1.00348 1.00125 0.93812 1.20471 0.95162 0.96028 0.94856 1.20970 0.99573 0.94625 0.96624 1.21294 0.97169 1.00038 0.92419 1.21343 0.97399 0.95850 1.02613 1.17592 0.91736 0.96644 0.87772 1.91440 1.64743 1.86554 1.70332 0.92024 0.92312 0.91978 0.92716 0.92456 0.99648 0.98471 0.92939 0.84002 0.89670 0.92886 0.88432 0.91188 0.84215 0.81701 0.82524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 9.42 71.98 0.68 -2.55 16 2 C 0.09 2.82 2.50 44.91 0.11 2.93 16 3 H 0.03 1.11 7.68 -2.39 -0.02 1.09 16 4 C -0.10 -4.06 4.75 30.59 0.15 -3.91 16 5 C 0.03 1.51 4.80 29.85 0.14 1.66 16 6 C -0.54 -30.68 9.11 25.60 0.23 -30.45 16 7 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 8 C 0.00 0.16 5.46 84.65 0.46 0.62 16 9 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 10 Si 0.96 44.30 29.54 68.60 2.03 46.33 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 14 N -0.68 -21.37 6.07 -469.86 -2.85 -24.22 16 15 C 0.13 3.56 2.95 44.84 0.13 3.69 16 16 H 0.11 2.61 7.16 -2.39 -0.02 2.59 16 17 C -0.15 -4.31 6.46 31.51 0.20 -4.11 16 18 C -0.07 -1.84 6.76 30.52 0.21 -1.63 16 19 C -0.15 -4.07 6.12 -19.55 -0.12 -4.19 16 20 C -0.06 -1.71 5.79 -19.60 -0.11 -1.82 16 21 C -0.10 -2.27 10.00 22.30 0.22 -2.05 16 22 C -0.09 -1.72 10.04 22.23 0.22 -1.49 16 23 C -0.15 -3.17 10.02 22.29 0.22 -2.94 16 24 C 0.08 2.12 7.30 22.41 0.16 2.29 16 25 F -0.15 -4.16 17.25 44.97 0.78 -3.38 16 26 H 0.06 1.36 7.37 -2.39 -0.02 1.35 16 27 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 31 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 32 H 0.00 -0.16 6.43 -2.39 -0.02 -0.17 16 33 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16 34 H 0.34 12.82 5.96 -89.69 -0.53 12.28 16 35 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.05 1.88 7.67 -2.39 -0.02 1.86 16 37 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 40 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 41 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -63.25 336.58 3.63 -59.62 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.48 Total: 21.71 kcal Atomic # 6 Polarization: -46.89 SS G_CDS: 2.92 Total: -43.98 kcal Atomic # 7 Polarization: -77.74 SS G_CDS: -2.57 Total: -80.31 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.78 Total: -3.38 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -63.25 3.63 -59.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172485930.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.185 kcal (2) G-P(sol) polarization free energy of solvation -63.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds