Wall clock time and date at job start Mon Mar 30 2020 02:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47539 * 2 1 4 4 C 1.53003 * 109.46623 * 119.99970 * 2 1 3 5 5 C 1.52999 * 109.46722 * 184.99820 * 4 2 1 6 6 C 1.50707 * 109.47223 * 180.02562 * 5 4 2 7 7 H 1.07996 * 119.99571 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99762 * 180.02562 * 6 5 4 9 9 N 1.31523 * 119.99552 * 179.97438 * 8 6 5 10 10 Si 1.86795 * 120.00662 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.47047 * 89.99499 * 10 8 6 12 12 H 1.48491 * 109.47426 * 209.99919 * 10 8 6 13 13 H 1.48501 * 109.46997 * 330.00317 * 10 8 6 14 14 N 1.46900 * 109.47013 * 239.99424 * 2 1 3 15 15 C 1.46902 * 110.99556 * 85.02336 * 14 2 1 16 16 H 1.08996 * 110.27313 * 323.65074 * 15 14 2 17 17 C 1.54353 * 110.30219 * 85.72495 * 15 14 2 18 18 C 1.54347 * 102.39217 * 92.66327 * 17 15 14 19 19 C 1.51377 * 105.17284 * 26.35696 * 18 17 15 20 20 C 1.38517 * 130.36003 * 162.78224 * 19 18 17 21 21 C 1.38067 * 120.25029 * 180.02562 * 20 19 18 22 22 C 1.38473 * 119.90983 * 359.97438 * 21 20 19 23 23 F 1.35098 * 120.06083 * 179.97438 * 22 21 20 24 24 C 1.38335 * 119.87935 * 0.02562 * 22 21 20 25 25 C 1.38237 * 109.75318 * 342.80795 * 19 18 17 26 26 H 1.08996 * 109.47414 * 184.70419 * 1 2 3 27 27 H 1.09002 * 109.46802 * 304.70857 * 1 2 3 28 28 H 1.08997 * 109.46767 * 64.70257 * 1 2 3 29 29 H 1.08994 * 109.47338 * 304.99462 * 4 2 1 30 30 H 1.09000 * 109.47444 * 64.99950 * 4 2 1 31 31 H 1.09001 * 109.47239 * 300.00025 * 5 4 2 32 32 H 1.09000 * 109.47791 * 60.00003 * 5 4 2 33 33 H 0.96996 * 119.99794 * 180.02562 * 9 8 6 34 34 H 1.00897 * 110.99977 * 208.97241 * 14 2 1 35 35 H 1.09002 * 110.81903 * 210.89023 * 17 15 14 36 36 H 1.08999 * 110.82035 * 334.43777 * 17 15 14 37 37 H 1.08996 * 110.30244 * 145.28236 * 18 17 15 38 38 H 1.09003 * 110.30245 * 267.43434 * 18 17 15 39 39 H 1.07997 * 119.87599 * 0.04450 * 20 19 18 40 40 H 1.08000 * 120.04484 * 179.97438 * 21 20 19 41 41 H 1.08000 * 119.90143 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5647 -0.6134 1.3138 6 6 4.0672 -1.3243 2.5439 7 1 3.3687 -1.8047 3.2130 8 6 5.4184 -1.3606 2.8156 9 7 5.8568 -1.9806 3.8895 10 14 6.6265 -0.5291 1.6587 11 1 6.8310 0.8786 2.0848 12 1 7.9237 -1.2509 1.6953 13 1 6.0850 -0.5540 0.2762 14 7 2.0197 -0.6926 -1.1994 15 6 2.0830 0.2226 -2.3467 16 1 1.2496 0.9245 -2.3163 17 6 3.4252 0.9847 -2.3505 18 6 4.3107 0.0916 -3.2453 19 6 3.3464 -0.6320 -4.1607 20 6 3.5720 -1.3026 -5.3515 21 6 2.5230 -1.8964 -6.0249 22 6 1.2404 -1.8221 -5.5083 23 9 0.2117 -2.4015 -6.1649 24 6 1.0142 -1.1525 -4.3191 25 6 2.0663 -0.5567 -3.6444 26 1 -0.3634 -1.0241 0.0843 27 1 -0.3633 0.5852 0.8448 28 1 -0.3633 0.4391 -0.9291 29 1 1.6054 -0.2617 2.1370 30 1 1.7516 -1.7715 1.2057 31 1 3.9994 -1.0729 0.4260 32 1 3.8533 0.4368 1.3574 33 1 6.8073 -2.0058 4.0809 34 1 2.9172 -1.1209 -1.0285 35 1 3.3067 1.9758 -2.7885 36 1 3.8355 1.0517 -1.3429 37 1 4.9984 0.7041 -3.8284 38 1 4.8634 -0.6239 -2.6365 39 1 4.5722 -1.3616 -5.7546 40 1 2.7026 -2.4181 -6.9533 41 1 0.0141 -1.0946 -3.9156 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172488287.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:53 Heat of formation + Delta-G solvation = -37.829250 kcal Electronic energy + Delta-G solvation = -21465.472671 eV Core-core repulsion = 18258.586720 eV Total energy + Delta-G solvation = -3206.885952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.94229 -40.35399 -37.41901 -35.05646 -32.97910 -31.69533 -30.52058 -29.38699 -28.44343 -26.14122 -25.06214 -23.08301 -21.33127 -21.14580 -20.54694 -19.62355 -17.30177 -16.81925 -16.59540 -16.00686 -15.58335 -15.51157 -14.91104 -14.43748 -14.31875 -13.89764 -13.71672 -13.50246 -12.89178 -12.77932 -12.53799 -12.48082 -12.13217 -11.98303 -11.75323 -11.64755 -11.48928 -11.21371 -11.09110 -10.94422 -10.76370 -10.57899 -10.00865 -9.81112 -9.49760 -9.22416 -9.04112 -8.58201 -8.52258 -8.17130 -6.07776 -4.05799 1.06227 1.14357 3.24913 3.32082 3.33681 3.44468 4.01127 4.33318 4.39559 4.40364 4.59636 4.81906 4.93639 5.03852 5.07749 5.20176 5.25627 5.37082 5.48858 5.53785 5.65058 5.69695 5.73924 5.79625 5.87471 5.97499 6.04400 6.05251 6.08174 6.19915 6.22936 6.36460 6.39383 6.50145 6.68389 6.80232 6.81232 7.21408 7.24029 7.45457 7.68437 7.75988 8.50904 8.97987 9.54365 11.05889 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019538 B = 0.004738 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.737182 B = 5908.828768 C = 6639.682963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.080 3.920 3 H 0.041 0.959 4 C -0.107 4.107 5 C -0.014 4.014 6 C -0.519 4.519 7 H 0.072 0.928 8 C 0.066 3.934 9 N -0.903 5.903 10 Si 0.880 3.120 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.266 1.266 14 N -0.675 5.675 15 C 0.125 3.875 16 H 0.088 0.912 17 C -0.155 4.155 18 C -0.083 4.083 19 C -0.100 4.100 20 C -0.084 4.084 21 C -0.153 4.153 22 C 0.089 3.911 23 F -0.143 7.143 24 C -0.122 4.122 25 C -0.048 4.048 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.013 0.987 32 H 0.008 0.992 33 H 0.263 0.737 34 H 0.353 0.647 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.853 5.329 -18.935 20.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.029 4.029 3 H 0.059 0.941 4 C -0.145 4.145 5 C -0.051 4.051 6 C -0.557 4.557 7 H 0.090 0.910 8 C -0.135 4.135 9 N -0.542 5.542 10 Si 0.707 3.293 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.191 1.191 14 N -0.308 5.308 15 C 0.014 3.986 16 H 0.106 0.894 17 C -0.194 4.194 18 C -0.120 4.120 19 C -0.100 4.100 20 C -0.102 4.102 21 C -0.172 4.172 22 C 0.070 3.930 23 F -0.121 7.121 24 C -0.142 4.142 25 C -0.049 4.049 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.031 0.969 32 H 0.026 0.974 33 H 0.073 0.927 34 H 0.175 0.825 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.146 0.854 40 H 0.152 0.848 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.349 5.001 -18.989 20.967 hybrid contribution 1.381 0.708 -0.424 1.609 sum -5.968 5.709 -19.413 21.097 Atomic orbital electron populations 1.21798 0.95366 1.01980 1.00340 1.21679 0.94890 0.96167 0.90156 0.94115 1.21669 0.98046 1.00180 0.94572 1.19609 0.91970 0.96128 0.97423 1.21126 0.92920 1.34288 1.07346 0.90993 1.25047 0.98412 0.94995 0.95043 1.69917 1.14618 1.43435 1.26204 0.86786 0.80735 0.79720 0.82048 1.20405 1.21394 1.19102 1.60554 1.34820 1.31654 1.03822 1.20989 0.97130 0.92134 0.88298 0.89423 1.23057 0.96271 0.98989 1.01124 1.21059 0.96836 0.98011 0.96102 1.20727 0.95580 0.98592 0.95141 1.20419 0.98789 0.96907 0.94051 1.20971 0.91253 1.03169 1.01780 1.17502 0.84495 0.98167 0.92816 1.91483 1.57856 1.82458 1.80338 1.20525 1.00492 0.99156 0.93985 1.20284 0.92491 0.96862 0.95248 0.92225 0.92832 0.93632 0.91984 0.91799 0.96921 0.97398 0.92739 0.82452 0.90586 0.89701 0.90517 0.89651 0.85351 0.84845 0.84935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.42 37.16 0.35 -1.48 16 2 C 0.08 1.23 2.44 -67.71 -0.17 1.07 16 3 H 0.04 0.62 7.59 -51.93 -0.39 0.23 16 4 C -0.11 -2.03 4.74 -26.73 -0.13 -2.15 16 5 C -0.01 -0.31 3.87 -27.88 -0.11 -0.42 16 6 C -0.52 -14.51 9.66 -34.44 -0.33 -14.85 16 7 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 8 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 9 N -0.90 -27.65 13.96 55.43 0.77 -26.87 16 10 Si 0.88 21.17 27.47 -169.99 -4.67 16.50 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 14 N -0.67 -10.19 6.07 -99.85 -0.61 -10.80 16 15 C 0.12 1.60 2.94 -67.82 -0.20 1.40 16 16 H 0.09 1.06 7.17 -51.93 -0.37 0.68 16 17 C -0.16 -1.88 6.33 -25.32 -0.16 -2.04 16 18 C -0.08 -0.98 6.75 -26.85 -0.18 -1.16 16 19 C -0.10 -1.21 6.14 -104.19 -0.64 -1.85 16 20 C -0.08 -0.90 10.04 -39.54 -0.40 -1.30 16 21 C -0.15 -1.65 10.03 -39.56 -0.40 -2.05 16 22 C 0.09 1.10 7.30 -39.46 -0.29 0.81 16 23 F -0.14 -1.80 17.27 2.25 0.04 -1.77 16 24 C -0.12 -1.54 10.02 -39.47 -0.40 -1.93 16 25 C -0.05 -0.61 5.77 -104.21 -0.60 -1.22 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.04 0.55 7.39 -51.93 -0.38 0.16 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.01 0.28 5.48 -51.93 -0.28 0.00 16 32 H 0.01 0.18 7.57 -51.93 -0.39 -0.22 16 33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.35 5.93 6.23 -39.29 -0.24 5.68 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 1.17 7.88 -51.93 -0.41 0.76 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 41 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 LS Contribution 333.23 15.07 5.02 5.02 Total: -1.00 -29.74 333.23 -9.48 -39.21 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.30 Total: 4.06 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: -3.74 Total: -25.36 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.17 Total: -37.67 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.74 -9.48 -39.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488287.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.385 kcal (2) G-P(sol) polarization free energy of solvation -29.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds