Wall clock time and date at job start Mon Mar 30 2020 02:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47539 * 2 1 4 4 C 1.53003 * 109.46623 * 119.99970 * 2 1 3 5 5 C 1.52999 * 109.46722 * 184.99820 * 4 2 1 6 6 C 1.50707 * 109.47223 * 180.02562 * 5 4 2 7 7 H 1.07996 * 119.99571 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99762 * 180.02562 * 6 5 4 9 9 N 1.31523 * 119.99552 * 179.97438 * 8 6 5 10 10 Si 1.86795 * 120.00662 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.47047 * 89.99499 * 10 8 6 12 12 H 1.48491 * 109.47426 * 209.99919 * 10 8 6 13 13 H 1.48501 * 109.46997 * 330.00317 * 10 8 6 14 14 N 1.46900 * 109.47013 * 239.99424 * 2 1 3 15 15 C 1.46902 * 110.99556 * 85.02336 * 14 2 1 16 16 H 1.08996 * 110.27313 * 323.65074 * 15 14 2 17 17 C 1.54353 * 110.30219 * 85.72495 * 15 14 2 18 18 C 1.54347 * 102.39217 * 92.66327 * 17 15 14 19 19 C 1.51377 * 105.17284 * 26.35696 * 18 17 15 20 20 C 1.38517 * 130.36003 * 162.78224 * 19 18 17 21 21 C 1.38067 * 120.25029 * 180.02562 * 20 19 18 22 22 C 1.38473 * 119.90983 * 359.97438 * 21 20 19 23 23 F 1.35098 * 120.06083 * 179.97438 * 22 21 20 24 24 C 1.38335 * 119.87935 * 0.02562 * 22 21 20 25 25 C 1.38237 * 109.75318 * 342.80795 * 19 18 17 26 26 H 1.08996 * 109.47414 * 184.70419 * 1 2 3 27 27 H 1.09002 * 109.46802 * 304.70857 * 1 2 3 28 28 H 1.08997 * 109.46767 * 64.70257 * 1 2 3 29 29 H 1.08994 * 109.47338 * 304.99462 * 4 2 1 30 30 H 1.09000 * 109.47444 * 64.99950 * 4 2 1 31 31 H 1.09001 * 109.47239 * 300.00025 * 5 4 2 32 32 H 1.09000 * 109.47791 * 60.00003 * 5 4 2 33 33 H 0.96996 * 119.99794 * 180.02562 * 9 8 6 34 34 H 1.00897 * 110.99977 * 208.97241 * 14 2 1 35 35 H 1.09002 * 110.81903 * 210.89023 * 17 15 14 36 36 H 1.08999 * 110.82035 * 334.43777 * 17 15 14 37 37 H 1.08996 * 110.30244 * 145.28236 * 18 17 15 38 38 H 1.09003 * 110.30245 * 267.43434 * 18 17 15 39 39 H 1.07997 * 119.87599 * 0.04450 * 20 19 18 40 40 H 1.08000 * 120.04484 * 179.97438 * 21 20 19 41 41 H 1.08000 * 119.90143 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5647 -0.6134 1.3138 6 6 4.0672 -1.3243 2.5439 7 1 3.3687 -1.8047 3.2130 8 6 5.4184 -1.3606 2.8156 9 7 5.8568 -1.9806 3.8895 10 14 6.6265 -0.5291 1.6587 11 1 6.8310 0.8786 2.0848 12 1 7.9237 -1.2509 1.6953 13 1 6.0850 -0.5540 0.2762 14 7 2.0197 -0.6926 -1.1994 15 6 2.0830 0.2226 -2.3467 16 1 1.2496 0.9245 -2.3163 17 6 3.4252 0.9847 -2.3505 18 6 4.3107 0.0916 -3.2453 19 6 3.3464 -0.6320 -4.1607 20 6 3.5720 -1.3026 -5.3515 21 6 2.5230 -1.8964 -6.0249 22 6 1.2404 -1.8221 -5.5083 23 9 0.2117 -2.4015 -6.1649 24 6 1.0142 -1.1525 -4.3191 25 6 2.0663 -0.5567 -3.6444 26 1 -0.3634 -1.0241 0.0843 27 1 -0.3633 0.5852 0.8448 28 1 -0.3633 0.4391 -0.9291 29 1 1.6054 -0.2617 2.1370 30 1 1.7516 -1.7715 1.2057 31 1 3.9994 -1.0729 0.4260 32 1 3.8533 0.4368 1.3574 33 1 6.8073 -2.0058 4.0809 34 1 2.9172 -1.1209 -1.0285 35 1 3.3067 1.9758 -2.7885 36 1 3.8355 1.0517 -1.3429 37 1 4.9984 0.7041 -3.8284 38 1 4.8634 -0.6239 -2.6365 39 1 4.5722 -1.3616 -5.7546 40 1 2.7026 -2.4181 -6.9533 41 1 0.0141 -1.0946 -3.9156 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172488287.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:52 Heat of formation + Delta-G solvation = -54.037807 kcal Electronic energy + Delta-G solvation = -21466.175527 eV Core-core repulsion = 18258.586720 eV Total energy + Delta-G solvation = -3207.588807 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.87579 -41.27743 -38.58469 -36.22414 -34.87935 -32.88521 -31.93674 -30.58210 -29.36206 -27.40868 -26.57428 -23.96280 -22.96594 -22.05373 -21.65739 -20.95082 -18.97369 -18.11595 -17.59657 -17.08593 -16.55152 -16.45762 -16.31211 -16.00115 -15.50404 -15.01615 -14.86760 -14.54397 -14.39315 -14.32796 -13.80737 -13.45910 -13.30998 -13.24537 -12.96822 -12.86372 -12.72851 -12.54663 -12.29112 -12.08044 -11.89998 -11.78294 -11.65908 -11.53473 -11.29880 -11.11390 -10.75829 -9.92596 -9.44485 -9.28755 -8.28724 -6.33093 0.16671 0.27319 1.34972 1.37401 1.48614 2.36158 2.54797 3.06556 3.10409 3.34032 3.50280 3.61810 3.98564 4.02491 4.08939 4.14464 4.23242 4.25694 4.36715 4.46440 4.58747 4.70895 4.74239 4.79867 4.89190 4.92284 4.97772 5.02480 5.04544 5.09327 5.15105 5.18571 5.19654 5.33561 5.42461 5.54048 5.55534 5.61411 5.67855 5.94256 6.22599 6.29690 6.43743 6.75569 7.31421 8.88459 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019538 B = 0.004738 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.737182 B = 5908.828768 C = 6639.682963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.090 3.910 3 H 0.049 0.951 4 C -0.100 4.100 5 C -0.006 4.006 6 C -0.532 4.532 7 H 0.027 0.973 8 C 0.002 3.998 9 N -0.954 5.954 10 Si 0.951 3.049 11 H -0.268 1.268 12 H -0.288 1.288 13 H -0.237 1.237 14 N -0.682 5.682 15 C 0.125 3.875 16 H 0.097 0.903 17 C -0.153 4.153 18 C -0.082 4.082 19 C -0.107 4.107 20 C -0.083 4.083 21 C -0.149 4.149 22 C 0.073 3.927 23 F -0.149 7.149 24 C -0.133 4.133 25 C -0.063 4.063 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.021 0.979 32 H 0.017 0.983 33 H 0.265 0.735 34 H 0.342 0.658 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.155 0.845 40 H 0.157 0.843 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.278 6.890 -21.762 23.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.019 4.019 3 H 0.067 0.933 4 C -0.138 4.138 5 C -0.043 4.043 6 C -0.570 4.570 7 H 0.045 0.955 8 C -0.195 4.195 9 N -0.595 5.595 10 Si 0.774 3.226 11 H -0.193 1.193 12 H -0.214 1.214 13 H -0.160 1.160 14 N -0.314 5.314 15 C 0.015 3.985 16 H 0.115 0.885 17 C -0.192 4.192 18 C -0.119 4.119 19 C -0.108 4.108 20 C -0.101 4.101 21 C -0.168 4.168 22 C 0.054 3.946 23 F -0.127 7.127 24 C -0.152 4.152 25 C -0.063 4.063 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.040 0.960 32 H 0.035 0.965 33 H 0.074 0.926 34 H 0.163 0.837 35 H 0.114 0.886 36 H 0.088 0.912 37 H 0.116 0.884 38 H 0.091 0.909 39 H 0.173 0.827 40 H 0.174 0.826 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.810 6.571 -21.832 23.795 hybrid contribution 1.139 0.150 0.507 1.256 sum -5.672 6.721 -21.325 23.067 Atomic orbital electron populations 1.21746 0.93646 1.01855 1.01695 1.21546 0.96145 0.95761 0.88484 0.93313 1.21539 0.95776 0.99822 0.96640 1.19512 0.94270 0.95624 0.94938 1.21516 0.92618 1.34256 1.08638 0.95463 1.26078 1.00745 0.95732 0.96910 1.70089 1.15244 1.45501 1.28683 0.85645 0.77533 0.78575 0.80852 1.19286 1.21356 1.16010 1.60579 1.34098 1.32519 1.04246 1.21040 0.98085 0.91960 0.87385 0.88547 1.23030 0.95605 1.00009 1.00546 1.21063 0.96932 0.97903 0.96023 1.20918 0.95335 0.98799 0.95699 1.20734 0.99992 0.95898 0.93436 1.21274 0.90532 1.02555 1.02418 1.17715 0.85067 0.98700 0.93079 1.91466 1.58238 1.82616 1.80425 1.20623 1.00721 0.99491 0.94350 1.20321 0.93006 0.97617 0.95402 0.93081 0.91857 0.91927 0.92536 0.93384 0.96041 0.96505 0.92602 0.83745 0.88613 0.91191 0.88409 0.90929 0.82739 0.82572 0.84824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 9.42 71.98 0.68 -2.60 16 2 C 0.09 2.63 2.44 44.92 0.11 2.73 16 3 H 0.05 1.37 7.59 -2.39 -0.02 1.35 16 4 C -0.10 -3.78 4.74 30.59 0.15 -3.64 16 5 C -0.01 -0.27 3.87 29.85 0.12 -0.15 16 6 C -0.53 -30.56 9.66 25.60 0.25 -30.31 16 7 H 0.03 1.74 7.99 -2.91 -0.02 1.72 16 8 C 0.00 0.10 5.47 84.65 0.46 0.56 16 9 N -0.95 -60.14 13.96 21.45 0.30 -59.85 16 10 Si 0.95 43.08 27.47 68.60 1.88 44.97 16 11 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 12 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 13 H -0.24 -9.54 6.54 99.48 0.65 -8.89 16 14 N -0.68 -19.58 6.07 -469.83 -2.85 -22.43 16 15 C 0.13 2.94 2.94 44.84 0.13 3.07 16 16 H 0.10 2.07 7.17 -2.39 -0.02 2.05 16 17 C -0.15 -3.27 6.33 31.51 0.20 -3.07 16 18 C -0.08 -1.69 6.75 30.52 0.21 -1.48 16 19 C -0.11 -2.31 6.14 -19.58 -0.12 -2.43 16 20 C -0.08 -1.52 10.04 22.30 0.22 -1.30 16 21 C -0.15 -2.83 10.03 22.29 0.22 -2.61 16 22 C 0.07 1.69 7.30 22.35 0.16 1.85 16 23 F -0.15 -3.59 17.27 44.97 0.78 -2.82 16 24 C -0.13 -3.15 10.02 22.34 0.22 -2.93 16 25 C -0.06 -1.48 5.77 -19.60 -0.11 -1.60 16 26 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.06 1.35 7.39 -2.39 -0.02 1.34 16 29 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.02 0.93 5.48 -2.39 -0.01 0.92 16 32 H 0.02 0.72 7.57 -2.39 -0.02 0.70 16 33 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 34 H 0.34 11.05 6.23 -89.70 -0.56 10.49 16 35 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.07 1.73 7.88 -2.39 -0.02 1.71 16 37 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 40 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 41 H 0.13 3.01 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -65.65 333.23 3.41 -62.25 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: 0.40 Total: 21.79 kcal Atomic # 6 Polarization: -46.80 SS G_CDS: 2.90 Total: -43.90 kcal Atomic # 7 Polarization: -79.73 SS G_CDS: -2.55 Total: -82.28 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.78 Total: -2.82 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.88 Total: 44.97 kcal Total: -65.65 3.41 -62.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488287.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.208 kcal (2) G-P(sol) polarization free energy of solvation -65.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds