Wall clock time and date at job start Mon Mar 30 2020 02:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47105 * 2 1 4 4 C 1.53002 * 109.47070 * 240.00191 * 2 1 3 5 5 C 1.52997 * 109.47447 * 174.99777 * 4 2 1 6 6 C 1.50701 * 109.47374 * 180.02562 * 5 4 2 7 7 H 1.07997 * 119.99721 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99728 * 179.97438 * 6 5 4 9 9 N 1.31508 * 120.00329 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99649 * 180.02562 * 8 6 5 11 11 H 1.48510 * 109.47112 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47313 * 119.99971 * 10 8 6 13 13 H 1.48497 * 109.46976 * 240.00409 * 10 8 6 14 14 N 1.46899 * 109.47548 * 120.00383 * 2 1 3 15 15 C 1.46897 * 110.99955 * 271.40453 * 14 2 1 16 16 C 1.50702 * 115.55113 * 159.55617 * 15 14 2 17 17 C 1.38249 * 119.97398 * 171.83104 * 16 15 14 18 18 C 1.38199 * 120.02462 * 179.77177 * 17 16 15 19 19 C 1.38459 * 119.97113 * 0.50620 * 18 17 16 20 20 F 1.35101 * 120.02164 * 179.77253 * 19 18 17 21 21 C 1.38457 * 119.94985 * 359.74668 * 19 18 17 22 22 C 1.38199 * 119.97573 * 359.97438 * 21 19 18 23 23 C 1.53003 * 117.49810 * 13.85036 * 15 14 2 24 24 C 1.53001 * 117.49877 * 305.22890 * 15 14 2 25 25 H 1.09001 * 109.47444 * 54.58195 * 1 2 3 26 26 H 1.09004 * 109.47233 * 174.58968 * 1 2 3 27 27 H 1.09006 * 109.46505 * 294.58160 * 1 2 3 28 28 H 1.09006 * 109.47014 * 54.99447 * 4 2 1 29 29 H 1.09001 * 109.47480 * 295.00005 * 4 2 1 30 30 H 1.09006 * 109.46894 * 300.00054 * 5 4 2 31 31 H 1.09002 * 109.46794 * 59.99790 * 5 4 2 32 32 H 0.97003 * 120.00143 * 179.97438 * 9 8 6 33 33 H 1.00895 * 111.00479 * 147.44952 * 14 2 1 34 34 H 1.07996 * 119.98576 * 0.02562 * 17 16 15 35 35 H 1.07996 * 120.00905 * 180.25789 * 18 17 16 36 36 H 1.08001 * 120.00807 * 179.97438 * 21 19 18 37 37 H 1.08000 * 119.98253 * 180.02562 * 22 21 19 38 38 H 1.09001 * 117.50153 * 359.97438 * 23 15 14 39 39 H 1.09003 * 117.49601 * 145.02207 * 23 15 14 40 40 H 1.08993 * 117.50014 * 214.97742 * 24 15 14 41 41 H 1.09001 * 117.49825 * 359.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 6 4.0670 -1.3231 -2.5447 7 1 3.3685 -1.8028 -3.2141 8 6 5.4183 -1.3591 -2.8165 9 7 6.2688 -0.7744 -2.0016 10 14 6.0407 -2.2384 -4.3426 11 1 4.8906 -2.8091 -5.0889 12 1 6.7631 -1.2734 -5.2099 13 1 6.9632 -3.3312 -3.9426 14 7 2.0198 -0.6925 1.1993 15 6 2.1636 0.2409 2.3244 16 6 2.1867 -0.3894 3.6931 17 6 2.4865 0.3792 4.8025 18 6 2.5034 -0.1967 6.0586 19 6 2.2302 -1.5462 6.2046 20 9 2.2509 -2.1112 7.4316 21 6 1.9352 -2.3160 5.0922 22 6 1.9132 -1.7367 3.8377 23 6 1.5055 1.6157 2.1903 24 6 3.0274 1.4845 2.1046 25 1 -0.3634 0.5956 -0.8375 26 1 -0.3634 -1.0231 -0.0969 27 1 -0.3632 0.4275 0.9346 28 1 1.6052 -0.2617 -2.1370 29 1 1.7516 -1.7715 -1.2057 30 1 3.8531 0.4371 -1.3575 31 1 3.9994 -1.0728 -0.4261 32 1 7.2195 -0.8001 -2.1927 33 1 2.8889 -1.1696 1.0120 34 1 2.7036 1.4309 4.6878 35 1 2.7336 0.4048 6.9255 36 1 1.7223 -3.3688 5.2049 37 1 1.6827 -2.3369 2.9700 38 1 0.9661 1.8276 1.2671 39 1 1.0890 2.0644 3.0922 40 1 3.6122 1.8469 2.9500 41 1 3.4894 1.6097 1.1253 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172489346.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:08 Heat of formation + Delta-G solvation = -4.683684 kcal Electronic energy + Delta-G solvation = -21208.887788 eV Core-core repulsion = 18003.439136 eV Total energy + Delta-G solvation = -3205.448652 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.91141 -40.05408 -37.98214 -35.01913 -32.83226 -31.27086 -30.17695 -29.81592 -28.92753 -25.15049 -23.42325 -22.90435 -22.26225 -21.52690 -20.14610 -19.04049 -17.77895 -16.78536 -16.40119 -15.95126 -15.61315 -15.40250 -14.73607 -14.64443 -14.49638 -13.59249 -13.37807 -13.21918 -12.81983 -12.71540 -12.60034 -12.47697 -12.01709 -11.87347 -11.37395 -11.31399 -11.20468 -10.99889 -10.95667 -10.73515 -10.47651 -10.36357 -10.29766 -9.79042 -9.32127 -9.11424 -9.06889 -8.48291 -8.39636 -7.94520 -6.04531 -4.06795 1.09251 1.23380 3.28470 3.36432 3.40350 3.44153 4.10746 4.23582 4.25730 4.42869 4.60458 4.75867 4.84377 4.92547 5.09495 5.28702 5.31650 5.43454 5.47155 5.55047 5.69467 5.71352 5.84053 5.89576 5.99129 6.05920 6.14306 6.16791 6.23151 6.31079 6.34804 6.43270 6.49902 6.59772 6.84047 6.88468 7.01838 7.41623 7.56263 7.72610 7.79400 7.94453 8.37796 9.00032 9.57963 11.06545 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019763 B = 0.003930 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.459531 B = 7122.174356 C = 7699.910882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.076 3.924 3 H 0.050 0.950 4 C -0.117 4.117 5 C 0.021 3.979 6 C -0.520 4.520 7 H 0.055 0.945 8 C 0.058 3.942 9 N -0.895 5.895 10 Si 0.890 3.110 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 N -0.647 5.647 15 C 0.091 3.909 16 C -0.037 4.037 17 C -0.094 4.094 18 C -0.154 4.154 19 C 0.085 3.915 20 F -0.146 7.146 21 C -0.155 4.155 22 C -0.066 4.066 23 C -0.173 4.173 24 C -0.206 4.206 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.012 0.988 31 H 0.015 0.985 32 H 0.260 0.740 33 H 0.359 0.641 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.147 0.853 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.774 2.950 13.764 17.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.033 4.033 3 H 0.068 0.932 4 C -0.155 4.155 5 C -0.016 4.016 6 C -0.558 4.558 7 H 0.074 0.926 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.718 3.282 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 N -0.280 5.280 15 C -0.002 4.002 16 C -0.038 4.038 17 C -0.112 4.112 18 C -0.173 4.173 19 C 0.066 3.934 20 F -0.124 7.124 21 C -0.173 4.173 22 C -0.084 4.084 23 C -0.211 4.211 24 C -0.245 4.245 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.030 0.970 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.183 0.817 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.165 0.835 38 H 0.127 0.873 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.209 2.708 13.993 17.532 hybrid contribution 1.354 -0.028 -0.849 1.599 sum -8.855 2.680 13.144 16.074 Atomic orbital electron populations 1.21893 0.95529 1.01833 1.00506 1.21741 0.94664 0.96987 0.89873 0.93209 1.21874 0.99743 0.99477 0.94372 1.19131 0.88664 0.96862 0.96969 1.21260 0.91961 1.34317 1.08272 0.92625 1.25014 0.97094 0.95568 0.96680 1.69961 1.02347 1.44099 1.36982 0.86560 0.78881 0.79496 0.83221 1.19723 1.21058 1.20994 1.60280 1.36042 1.27213 1.04511 1.20062 1.04047 0.85835 0.90259 1.18993 0.98859 0.93744 0.92201 1.20816 0.99074 1.00237 0.91063 1.21001 1.04243 0.93411 0.98676 1.17741 1.03623 0.92024 0.79981 1.91474 1.94295 1.85417 1.41240 1.21196 1.03634 1.00644 0.91863 1.21022 0.96018 0.94512 0.96829 1.23510 0.95974 0.97667 1.03905 1.23701 0.93379 1.03281 1.04184 0.93107 0.92435 0.93021 0.92582 0.92438 0.96980 0.96670 0.93061 0.81745 0.85201 0.85026 0.84857 0.83549 0.87275 0.88694 0.88618 0.87620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.83 37.16 0.33 -1.60 16 2 C 0.08 1.23 2.04 -67.71 -0.14 1.09 16 3 H 0.05 0.82 5.02 -51.93 -0.26 0.56 16 4 C -0.12 -2.28 4.72 -26.73 -0.13 -2.40 16 5 C 0.02 0.51 4.81 -27.88 -0.13 0.38 16 6 C -0.52 -14.34 9.11 -34.44 -0.31 -14.66 16 7 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 9 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 10 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 N -0.65 -10.09 5.37 -94.21 -0.51 -10.60 16 15 C 0.09 1.26 3.09 -132.75 -0.41 0.85 16 16 C -0.04 -0.48 5.67 -104.62 -0.59 -1.08 16 17 C -0.09 -1.07 8.80 -39.59 -0.35 -1.42 16 18 C -0.15 -1.72 10.03 -39.51 -0.40 -2.12 16 19 C 0.09 1.04 7.30 -39.42 -0.29 0.76 16 20 F -0.15 -1.83 17.27 2.25 0.04 -1.79 16 21 C -0.15 -1.85 10.03 -39.51 -0.40 -2.25 16 22 C -0.07 -0.85 9.49 -39.60 -0.38 -1.22 16 23 C -0.17 -2.13 8.17 -26.73 -0.22 -2.35 16 24 C -0.21 -2.81 9.15 -26.73 -0.24 -3.06 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.66 6.63 -51.93 -0.34 0.32 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.02 0.39 6.45 -51.93 -0.33 0.05 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.36 6.35 6.54 -39.29 -0.26 6.09 16 34 H 0.13 1.26 6.51 -52.49 -0.34 0.92 16 35 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.15 1.89 7.29 -52.49 -0.38 1.51 16 38 H 0.11 1.37 4.93 -51.93 -0.26 1.11 16 39 H 0.09 1.00 7.81 -51.93 -0.41 0.60 16 40 H 0.10 1.16 6.86 -51.93 -0.36 0.80 16 41 H 0.11 1.69 7.41 -51.93 -0.38 1.30 16 LS Contribution 331.79 15.07 5.00 5.00 Total: -1.00 -28.74 331.79 -9.33 -38.06 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -5.82 Total: 6.08 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: -3.75 Total: -27.55 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 0.23 Total: -36.17 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.74 -9.33 -38.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489346.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.380 kcal (2) G-P(sol) polarization free energy of solvation -28.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds