Wall clock time and date at job start Mon Mar 30 2020 02:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47683 * 2 1 4 4 C 1.52999 * 109.46786 * 239.99804 * 2 1 3 5 5 C 1.53004 * 109.46997 * 175.00202 * 4 2 1 6 6 C 1.50703 * 109.46950 * 180.02562 * 5 4 2 7 7 H 1.07994 * 120.00249 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99770 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00100 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99952 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47202 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47315 * 119.99937 * 10 8 6 13 13 H 1.48506 * 109.47028 * 240.00112 * 10 8 6 14 14 N 1.46903 * 109.47197 * 120.00530 * 2 1 3 15 15 C 1.46905 * 110.99827 * 274.30995 * 14 2 1 16 16 H 1.09004 * 110.34317 * 34.17234 * 15 14 2 17 17 C 1.54172 * 110.57218 * 272.31831 * 15 14 2 18 18 C 1.54341 * 102.47143 * 214.87174 * 17 15 14 19 19 C 1.51363 * 105.17004 * 26.13930 * 18 17 15 20 20 C 1.38230 * 109.76306 * 342.80435 * 19 18 17 21 21 C 1.38470 * 119.85907 * 180.02562 * 20 19 18 22 22 C 1.38160 * 120.27059 * 359.97438 * 21 20 19 23 23 C 1.38169 * 119.96568 * 0.02562 * 22 21 20 24 24 C 1.38371 * 119.90709 * 0.02562 * 23 22 21 25 25 F 1.35098 * 119.92228 * 179.97438 * 24 23 22 26 26 H 1.08996 * 109.47499 * 185.04654 * 1 2 3 27 27 H 1.09006 * 109.46755 * 305.04962 * 1 2 3 28 28 H 1.09002 * 109.47332 * 65.04356 * 1 2 3 29 29 H 1.08998 * 109.47478 * 295.00504 * 4 2 1 30 30 H 1.09000 * 109.46880 * 55.00452 * 4 2 1 31 31 H 1.08999 * 109.47230 * 299.99886 * 5 4 2 32 32 H 1.09000 * 109.47101 * 60.00386 * 5 4 2 33 33 H 0.96998 * 119.99838 * 179.97438 * 9 8 6 34 34 H 1.00896 * 110.99744 * 38.25679 * 14 2 1 35 35 H 1.09000 * 110.96974 * 96.53030 * 17 15 14 36 36 H 1.09011 * 110.77241 * 333.11472 * 17 15 14 37 37 H 1.08997 * 110.30126 * 267.21821 * 18 17 15 38 38 H 1.09001 * 110.30533 * 145.06498 * 18 17 15 39 39 H 1.08000 * 119.86179 * 179.97438 * 21 20 19 40 40 H 1.07994 * 120.01281 * 179.97438 * 22 21 20 41 41 H 1.08002 * 120.04750 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5647 -0.6134 -1.3137 6 6 4.0669 -1.3234 -2.5445 7 1 3.3684 -1.8031 -3.2140 8 6 5.4182 -1.3595 -2.8164 9 7 6.2688 -0.7748 -2.0014 10 14 6.0406 -2.2388 -4.3424 11 1 4.8906 -2.8106 -5.0880 12 1 6.7631 -1.2739 -5.2097 13 1 6.9631 -3.3317 -3.9423 14 7 2.0196 -0.6926 1.1994 15 6 2.0980 0.2263 2.3429 16 1 1.2938 0.9607 2.2946 17 6 3.4631 0.9423 2.3700 18 6 3.7402 1.0743 3.8825 19 6 2.9732 -0.0607 4.5263 20 6 2.0270 -0.5456 3.6429 21 6 1.2034 -1.5926 4.0210 22 6 1.3239 -2.1548 5.2772 23 6 2.2690 -1.6717 6.1618 24 6 3.0928 -0.6249 5.7875 25 9 4.0166 -0.1519 6.6523 26 1 -0.3634 -1.0236 0.0904 27 1 -0.3633 0.5902 0.8414 28 1 -0.3634 0.4336 -0.9317 29 1 1.7514 -1.7715 -1.2056 30 1 1.6053 -0.2617 -2.1369 31 1 3.8532 0.4368 -1.3574 32 1 3.9993 -1.0730 -0.4260 33 1 7.2194 -0.8006 -2.1925 34 1 1.4428 -1.4915 1.4164 35 1 3.3980 1.9240 1.9008 36 1 4.2283 0.3341 1.8875 37 1 3.3768 2.0334 4.2513 38 1 4.8068 0.9710 4.0821 39 1 0.4639 -1.9712 3.3310 40 1 0.6791 -2.9710 5.5679 41 1 2.3640 -2.1099 7.1443 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172490108.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:55 Heat of formation + Delta-G solvation = -55.767503 kcal Electronic energy + Delta-G solvation = -21312.716909 eV Core-core repulsion = 18105.053096 eV Total energy + Delta-G solvation = -3207.663813 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.87630 -41.18450 -38.41122 -36.36872 -35.05514 -32.90155 -31.34867 -30.26196 -29.72957 -27.07817 -26.59079 -23.69967 -23.22513 -22.43290 -21.53894 -21.01261 -18.41037 -18.18695 -17.40067 -17.13221 -16.61718 -16.54412 -16.46231 -15.96169 -15.46841 -14.96620 -14.69825 -14.40056 -14.21222 -13.99595 -13.80121 -13.54423 -13.32940 -13.10378 -12.91225 -12.85706 -12.66027 -12.43571 -12.27756 -12.22355 -12.05920 -11.86831 -11.68585 -11.47139 -11.19072 -10.91336 -10.47041 -9.83168 -9.59124 -9.06706 -8.12127 -6.22037 0.17876 0.22101 1.40191 1.40667 1.53559 2.44672 2.56852 3.20429 3.23411 3.31230 3.42071 3.46326 3.96508 4.03323 4.09098 4.19089 4.28347 4.33933 4.40552 4.47969 4.54049 4.65131 4.74616 4.81660 4.93270 4.95781 5.02590 5.07339 5.12768 5.18313 5.20711 5.30783 5.34088 5.37609 5.49908 5.53049 5.62078 5.92134 5.93843 6.06846 6.28451 6.37455 6.64295 6.98759 7.46070 8.99165 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019432 B = 0.004148 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.548104 B = 6748.697647 C = 7389.119517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.090 3.910 3 H 0.062 0.938 4 C -0.088 4.088 5 C 0.040 3.960 6 C -0.541 4.541 7 H 0.055 0.945 8 C -0.001 4.001 9 N -0.933 5.933 10 Si 0.959 3.041 11 H -0.262 1.262 12 H -0.279 1.279 13 H -0.281 1.281 14 N -0.680 5.680 15 C 0.134 3.866 16 H 0.074 0.926 17 C -0.111 4.111 18 C -0.073 4.073 19 C -0.144 4.144 20 C -0.076 4.076 21 C -0.115 4.115 22 C -0.086 4.086 23 C -0.154 4.154 24 C 0.084 3.916 25 F -0.151 7.151 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.049 0.951 31 H -0.023 1.023 32 H 0.003 0.997 33 H 0.260 0.740 34 H 0.345 0.655 35 H 0.079 0.921 36 H 0.054 0.946 37 H 0.097 0.903 38 H 0.069 0.931 39 H 0.146 0.854 40 H 0.169 0.831 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.672 0.529 15.701 20.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 H 0.080 0.920 4 C -0.126 4.126 5 C 0.003 3.997 6 C -0.579 4.579 7 H 0.073 0.927 8 C -0.198 4.198 9 N -0.573 5.573 10 Si 0.784 3.216 11 H -0.186 1.186 12 H -0.205 1.205 13 H -0.206 1.206 14 N -0.312 5.312 15 C 0.025 3.975 16 H 0.092 0.908 17 C -0.150 4.150 18 C -0.111 4.111 19 C -0.145 4.145 20 C -0.076 4.076 21 C -0.133 4.133 22 C -0.103 4.103 23 C -0.172 4.172 24 C 0.065 3.935 25 F -0.130 7.130 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.068 0.932 31 H -0.005 1.005 32 H 0.022 0.978 33 H 0.068 0.932 34 H 0.165 0.835 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.115 0.885 38 H 0.088 0.912 39 H 0.164 0.836 40 H 0.187 0.813 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -12.807 0.654 15.570 20.171 hybrid contribution 0.339 -0.032 -0.453 0.567 sum -12.467 0.622 15.117 19.605 Atomic orbital electron populations 1.22407 0.95198 1.02572 1.02619 1.21571 0.93398 0.97005 0.89964 0.91990 1.21454 0.96512 0.99102 0.95534 1.18812 0.92219 0.93805 0.94870 1.21865 0.92438 1.34198 1.09387 0.92700 1.25927 0.97465 0.96536 0.99885 1.70129 1.02475 1.45791 1.38953 0.85501 0.78418 0.78304 0.79419 1.18597 1.20487 1.20639 1.60560 1.58123 1.09660 1.02883 1.20938 0.97254 0.93057 0.86267 0.90829 1.22331 0.97054 1.00560 0.95010 1.20975 0.99642 0.96355 0.94088 1.20729 1.00029 1.00208 0.93522 1.20608 0.95447 0.96458 0.95103 1.20986 0.99575 0.95216 0.97559 1.21271 0.97319 0.99668 0.92065 1.21373 0.96714 0.96427 1.02720 1.17637 0.91271 0.97401 0.87196 1.91444 1.64564 1.87933 1.69057 0.91681 0.91817 0.91674 0.93439 0.93206 1.00460 0.97832 0.93150 0.83490 0.90257 0.92721 0.88451 0.91195 0.83632 0.81339 0.82419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.91 9.17 71.98 0.66 -3.25 16 2 C 0.09 2.87 2.44 44.91 0.11 2.98 16 3 H 0.06 2.10 7.77 -2.39 -0.02 2.08 16 4 C -0.09 -3.59 4.83 30.60 0.15 -3.44 16 5 C 0.04 2.16 4.86 29.85 0.15 2.31 16 6 C -0.54 -31.70 9.11 25.60 0.23 -31.47 16 7 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16 8 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 9 N -0.93 -58.65 13.29 21.45 0.28 -58.36 16 10 Si 0.96 45.58 29.54 68.60 2.03 47.61 16 11 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 14 N -0.68 -21.19 5.53 -470.17 -2.60 -23.79 16 15 C 0.13 3.68 2.94 44.78 0.13 3.81 16 16 H 0.07 1.79 7.29 -2.38 -0.02 1.78 16 17 C -0.11 -3.44 6.66 31.45 0.21 -3.23 16 18 C -0.07 -1.97 6.76 30.51 0.21 -1.77 16 19 C -0.14 -3.90 6.12 -19.55 -0.12 -4.02 16 20 C -0.08 -1.92 5.76 -19.60 -0.11 -2.03 16 21 C -0.12 -2.30 9.48 22.31 0.21 -2.09 16 22 C -0.09 -1.43 10.04 22.23 0.22 -1.21 16 23 C -0.15 -3.00 10.02 22.28 0.22 -2.78 16 24 C 0.08 2.14 7.30 22.41 0.16 2.31 16 25 F -0.15 -4.10 17.25 44.97 0.78 -3.33 16 26 H 0.06 1.37 8.04 -2.39 -0.02 1.35 16 27 H 0.06 1.25 7.59 -2.38 -0.02 1.23 16 28 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 29 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 31 H -0.02 -1.36 8.14 -2.39 -0.02 -1.38 16 32 H 0.00 0.19 7.75 -2.39 -0.02 0.17 16 33 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 34 H 0.34 9.39 7.20 -89.70 -0.65 8.74 16 35 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.05 2.15 8.09 -2.38 -0.02 2.13 16 37 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.15 2.25 7.62 -2.91 -0.02 2.23 16 40 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 41 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -69.32 338.39 3.75 -65.57 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.37 Total: 15.78 kcal Atomic # 6 Polarization: -46.37 SS G_CDS: 2.89 Total: -43.48 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -2.32 Total: -82.16 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.78 Total: -3.33 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -69.32 3.75 -65.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490108.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.803 kcal (2) G-P(sol) polarization free energy of solvation -69.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds