Wall clock time and date at job start Mon Mar 30 2020 02:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47609 * 2 1 4 4 C 1.53001 * 109.46909 * 239.99632 * 2 1 3 5 5 C 1.52993 * 109.46968 * 62.77864 * 4 2 1 6 6 C 1.50702 * 109.47224 * 174.57714 * 5 4 2 7 7 H 1.08001 * 119.99738 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00298 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99525 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99890 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46980 * 90.00309 * 10 8 6 12 12 H 1.48499 * 109.46783 * 209.99937 * 10 8 6 13 13 H 1.48495 * 109.46970 * 329.99790 * 10 8 6 14 14 N 1.46898 * 109.46980 * 119.99994 * 2 1 3 15 15 C 1.46844 * 111.00223 * 298.37550 * 14 2 1 16 16 C 1.53033 * 109.52659 * 174.16198 * 15 14 2 17 17 H 1.09000 * 109.50480 * 299.23639 * 16 15 14 18 18 C 1.53008 * 109.50561 * 179.11822 * 16 15 14 19 19 O 1.42896 * 109.47134 * 174.99863 * 18 16 15 20 20 C 1.53122 * 109.28086 * 59.17775 * 16 15 14 21 21 C 1.53117 * 109.15801 * 302.34833 * 20 16 15 22 22 F 1.39904 * 109.50202 * 177.59317 * 21 20 16 23 23 F 1.39905 * 109.50219 * 297.71019 * 21 20 16 24 24 C 1.46850 * 111.00091 * 174.16362 * 14 2 1 25 25 H 1.08992 * 109.47877 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46701 * 300.00323 * 1 2 3 27 27 H 1.09007 * 109.46936 * 59.99677 * 1 2 3 28 28 H 1.08999 * 109.46967 * 302.77590 * 4 2 1 29 29 H 1.09000 * 109.47139 * 182.77762 * 4 2 1 30 30 H 1.08996 * 109.47521 * 54.57342 * 5 4 2 31 31 H 1.08996 * 109.47257 * 294.57090 * 5 4 2 32 32 H 0.96997 * 120.00251 * 359.97438 * 9 8 6 33 33 H 1.09009 * 109.46078 * 294.17632 * 15 14 2 34 34 H 1.09000 * 109.46104 * 54.15368 * 15 14 2 35 35 H 1.09000 * 109.46994 * 295.00244 * 18 16 15 36 36 H 1.09001 * 109.46799 * 54.99842 * 18 16 15 37 37 H 0.96697 * 113.99924 * 180.02562 * 19 18 16 38 38 H 1.09004 * 109.51999 * 62.24934 * 20 16 15 39 39 H 1.08998 * 109.52401 * 182.37407 * 20 16 15 40 40 H 1.09002 * 109.46213 * 305.85228 * 24 14 2 41 41 H 1.09000 * 109.46187 * 65.82415 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5878 0.0391 -2.4974 6 6 2.1997 -0.5940 -3.7205 7 1 2.8468 -1.4526 -3.6177 8 6 1.9336 -0.0771 -4.9708 9 7 1.1452 0.9681 -5.0959 10 14 2.6927 -0.8615 -6.4867 11 1 1.7865 -1.9182 -7.0036 12 1 2.8927 0.1740 -7.5321 13 1 4.0022 -1.4635 -6.1293 14 7 2.0196 -0.6925 1.1994 15 6 1.5808 -0.0046 2.4203 16 6 1.9831 -0.8294 3.6449 17 1 1.5018 -1.8064 3.5998 18 6 1.5451 -0.1016 4.9175 19 8 1.8159 -0.9244 6.0540 20 6 3.5038 -1.0088 3.6563 21 6 3.9399 -1.6837 2.3530 22 9 5.3338 -1.8015 2.3317 23 9 3.3617 -2.9548 2.2689 24 6 3.4809 -0.8340 1.1658 25 1 -0.3634 -1.0275 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6365 -1.7336 -1.2744 29 1 3.1288 -0.7647 -1.2247 30 1 1.9097 1.0780 -2.4265 31 1 0.5012 -0.0003 -2.5732 32 1 0.7508 1.3751 -4.3088 33 1 2.0515 0.9772 2.4731 34 1 0.4973 0.1127 2.4016 35 1 2.0950 0.8352 5.0078 36 1 0.4766 0.1078 4.8668 37 1 1.5626 -0.5255 6.8977 38 1 3.9848 -0.0343 3.7407 39 1 3.7908 -1.6313 4.5038 40 1 3.7775 -1.3191 0.2358 41 1 3.9427 0.1516 1.2245 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491039.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:44 Heat of formation + Delta-G solvation = -169.190597 kcal Electronic energy + Delta-G solvation = -22814.906342 eV Core-core repulsion = 19171.554910 eV Total energy + Delta-G solvation = -3643.351432 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.159 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.85278 -46.84399 -39.41581 -37.34925 -35.21276 -33.33176 -31.53060 -30.67491 -28.42126 -26.33766 -25.27465 -23.93765 -22.12944 -21.74558 -20.18173 -19.44149 -17.72122 -17.30023 -16.94016 -16.65422 -16.49845 -15.77501 -15.03689 -14.68853 -14.30299 -14.09041 -13.76066 -13.67485 -13.61712 -13.34097 -13.19033 -12.84896 -12.57877 -12.38630 -12.32487 -12.00721 -11.70151 -11.52747 -11.21019 -11.15848 -10.97261 -10.72470 -10.46610 -10.33400 -10.19296 -10.11151 -9.79994 -9.70725 -8.52599 -8.35712 -8.29951 -6.35508 -4.04183 3.40179 3.45094 3.48295 3.64103 3.76833 3.92490 4.10942 4.31409 4.40595 4.55613 4.82648 4.91729 4.96430 5.06929 5.13207 5.21190 5.29390 5.34990 5.39131 5.42136 5.49147 5.59882 5.72259 5.74682 5.82590 6.00487 6.12783 6.18547 6.43867 6.50055 6.55447 6.87602 7.06411 7.14251 7.27369 7.40275 7.53949 8.23370 8.48060 8.89941 9.67646 11.05244 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.026851 B = 0.004067 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.530708 B = 6882.635941 C = 7637.626523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.084 3.916 3 H 0.040 0.960 4 C -0.101 4.101 5 C 0.011 3.989 6 C -0.601 4.601 7 H 0.048 0.952 8 C 0.014 3.986 9 N -0.915 5.915 10 Si 1.070 2.930 11 H -0.288 1.288 12 H -0.285 1.285 13 H -0.289 1.289 14 N -0.525 5.525 15 C 0.051 3.949 16 C -0.084 4.084 17 H 0.097 0.903 18 C 0.085 3.915 19 O -0.571 6.571 20 C -0.149 4.149 21 C 0.294 3.706 22 F -0.202 7.202 23 F -0.188 7.188 24 C 0.011 3.989 25 H 0.063 0.937 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.004 0.996 31 H 0.012 0.988 32 H 0.268 0.732 33 H 0.037 0.963 34 H 0.090 0.910 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.380 0.620 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.111 0.889 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.227 -0.214 21.417 21.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.023 4.023 3 H 0.058 0.942 4 C -0.139 4.139 5 C -0.027 4.027 6 C -0.639 4.639 7 H 0.067 0.933 8 C -0.189 4.189 9 N -0.551 5.551 10 Si 0.899 3.101 11 H -0.214 1.214 12 H -0.210 1.210 13 H -0.215 1.215 14 N -0.250 5.250 15 C -0.077 4.077 16 C -0.103 4.103 17 H 0.116 0.884 18 C 0.007 3.993 19 O -0.377 6.377 20 C -0.188 4.188 21 C 0.257 3.743 22 F -0.183 7.183 23 F -0.169 7.169 24 C -0.118 4.118 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.022 0.978 31 H 0.030 0.970 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.108 0.892 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.227 0.773 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.129 0.871 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.355 -1.003 19.287 19.361 hybrid contribution 0.219 0.968 2.106 2.328 sum 1.574 -0.035 21.393 21.451 Atomic orbital electron populations 1.21890 0.94102 1.02566 1.01333 1.21832 0.95941 0.95447 0.89037 0.94242 1.21697 0.99594 0.99740 0.92819 1.19245 0.96247 0.94941 0.92233 1.22093 1.32389 1.16707 0.92730 0.93319 1.25839 0.95931 0.95805 1.01334 1.70760 1.29817 1.20942 1.33606 0.83524 0.75765 0.75606 0.75228 1.21431 1.21036 1.21483 1.61823 1.08513 1.52182 1.02453 1.22187 1.01861 0.94722 0.88888 1.21120 0.94474 1.01751 0.92928 0.88448 1.22090 0.99158 0.92580 0.85515 1.86488 1.87336 1.46958 1.16889 1.22553 0.97541 1.02497 0.96169 1.20977 0.73922 0.81351 0.98037 1.92998 1.31232 1.96480 1.97618 1.93018 1.84106 1.42445 1.97376 1.23067 0.90416 0.99638 0.98640 0.91838 0.93596 0.91103 0.92119 0.92980 0.97805 0.96980 0.92168 0.94432 0.89173 0.93467 0.92906 0.77337 0.89444 0.88805 0.87102 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.73 37.16 0.32 -1.83 16 2 C 0.08 1.39 2.17 -67.71 -0.15 1.24 16 3 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.10 -2.07 4.33 -26.73 -0.12 -2.18 16 5 C 0.01 0.27 3.84 -27.89 -0.11 0.16 16 6 C -0.60 -17.21 9.11 -34.44 -0.31 -17.53 16 7 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 8 C 0.01 0.42 5.46 -17.82 -0.10 0.32 16 9 N -0.91 -28.05 13.65 55.43 0.76 -27.29 16 10 Si 1.07 25.62 29.90 -169.99 -5.08 20.54 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 14 N -0.52 -7.59 4.46 -226.69 -1.01 -8.60 16 15 C 0.05 0.58 4.53 -3.84 -0.02 0.56 16 16 C -0.08 -0.88 2.46 -90.54 -0.22 -1.10 16 17 H 0.10 1.21 7.91 -51.93 -0.41 0.80 16 18 C 0.08 0.67 6.43 37.16 0.24 0.91 16 19 O -0.57 -4.80 13.25 -35.23 -0.47 -5.27 16 20 C -0.15 -1.66 4.68 -26.61 -0.12 -1.79 16 21 C 0.29 4.06 2.14 -26.65 -0.06 4.00 16 22 F -0.20 -2.95 17.07 2.25 0.04 -2.91 16 23 F -0.19 -3.02 16.60 2.25 0.04 -2.98 16 24 C 0.01 0.16 4.59 -3.83 -0.02 0.15 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.05 0.57 6.31 -51.93 -0.33 0.24 16 27 H 0.07 1.18 6.62 -51.93 -0.34 0.84 16 28 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.05 1.07 6.04 -51.93 -0.31 0.76 16 30 H 0.00 0.10 8.01 -51.93 -0.42 -0.32 16 31 H 0.01 0.31 6.65 -51.93 -0.35 -0.03 16 32 H 0.27 8.13 7.22 -40.82 -0.29 7.84 16 33 H 0.04 0.39 8.14 -51.92 -0.42 -0.03 16 34 H 0.09 0.95 6.06 -51.93 -0.31 0.63 16 35 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.38 1.39 9.12 45.56 0.42 1.81 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.09 1.06 7.90 -51.93 -0.41 0.65 16 40 H 0.11 1.78 5.81 -51.93 -0.30 1.48 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 325.26 15.07 4.90 4.90 Total: -1.00 -32.40 325.26 -7.13 -39.54 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -5.65 Total: -0.84 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -0.66 Total: -17.09 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: -0.25 Total: -35.89 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.47 Total: -5.27 kcal Atomic # 9 Polarization: -5.96 SS G_CDS: 0.08 Total: -5.89 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.08 Total: 20.54 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.40 -7.13 -39.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491039.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.654 kcal (2) G-P(sol) polarization free energy of solvation -32.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds