Wall clock time and date at job start Mon Mar 30 2020 02:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47609 * 2 1 4 4 C 1.53001 * 109.46909 * 239.99632 * 2 1 3 5 5 C 1.52993 * 109.46968 * 62.77864 * 4 2 1 6 6 C 1.50702 * 109.47224 * 174.57714 * 5 4 2 7 7 H 1.08001 * 119.99738 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00298 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99525 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99890 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46980 * 90.00309 * 10 8 6 12 12 H 1.48499 * 109.46783 * 209.99937 * 10 8 6 13 13 H 1.48495 * 109.46970 * 329.99790 * 10 8 6 14 14 N 1.46898 * 109.46980 * 119.99994 * 2 1 3 15 15 C 1.46844 * 111.00223 * 298.37550 * 14 2 1 16 16 C 1.53033 * 109.52659 * 174.16198 * 15 14 2 17 17 H 1.09000 * 109.50480 * 299.23639 * 16 15 14 18 18 C 1.53008 * 109.50561 * 179.11822 * 16 15 14 19 19 O 1.42896 * 109.47134 * 174.99863 * 18 16 15 20 20 C 1.53122 * 109.28086 * 59.17775 * 16 15 14 21 21 C 1.53117 * 109.15801 * 302.34833 * 20 16 15 22 22 F 1.39904 * 109.50202 * 177.59317 * 21 20 16 23 23 F 1.39905 * 109.50219 * 297.71019 * 21 20 16 24 24 C 1.46850 * 111.00091 * 174.16362 * 14 2 1 25 25 H 1.08992 * 109.47877 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46701 * 300.00323 * 1 2 3 27 27 H 1.09007 * 109.46936 * 59.99677 * 1 2 3 28 28 H 1.08999 * 109.46967 * 302.77590 * 4 2 1 29 29 H 1.09000 * 109.47139 * 182.77762 * 4 2 1 30 30 H 1.08996 * 109.47521 * 54.57342 * 5 4 2 31 31 H 1.08996 * 109.47257 * 294.57090 * 5 4 2 32 32 H 0.96997 * 120.00251 * 359.97438 * 9 8 6 33 33 H 1.09009 * 109.46078 * 294.17632 * 15 14 2 34 34 H 1.09000 * 109.46104 * 54.15368 * 15 14 2 35 35 H 1.09000 * 109.46994 * 295.00244 * 18 16 15 36 36 H 1.09001 * 109.46799 * 54.99842 * 18 16 15 37 37 H 0.96697 * 113.99924 * 180.02562 * 19 18 16 38 38 H 1.09004 * 109.51999 * 62.24934 * 20 16 15 39 39 H 1.08998 * 109.52401 * 182.37407 * 20 16 15 40 40 H 1.09002 * 109.46213 * 305.85228 * 24 14 2 41 41 H 1.09000 * 109.46187 * 65.82415 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5878 0.0391 -2.4974 6 6 2.1997 -0.5940 -3.7205 7 1 2.8468 -1.4526 -3.6177 8 6 1.9336 -0.0771 -4.9708 9 7 1.1452 0.9681 -5.0959 10 14 2.6927 -0.8615 -6.4867 11 1 1.7865 -1.9182 -7.0036 12 1 2.8927 0.1740 -7.5321 13 1 4.0022 -1.4635 -6.1293 14 7 2.0196 -0.6925 1.1994 15 6 1.5808 -0.0046 2.4203 16 6 1.9831 -0.8294 3.6449 17 1 1.5018 -1.8064 3.5998 18 6 1.5451 -0.1016 4.9175 19 8 1.8159 -0.9244 6.0540 20 6 3.5038 -1.0088 3.6563 21 6 3.9399 -1.6837 2.3530 22 9 5.3338 -1.8015 2.3317 23 9 3.3617 -2.9548 2.2689 24 6 3.4809 -0.8340 1.1658 25 1 -0.3634 -1.0275 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6365 -1.7336 -1.2744 29 1 3.1288 -0.7647 -1.2247 30 1 1.9097 1.0780 -2.4265 31 1 0.5012 -0.0003 -2.5732 32 1 0.7508 1.3751 -4.3088 33 1 2.0515 0.9772 2.4731 34 1 0.4973 0.1127 2.4016 35 1 2.0950 0.8352 5.0078 36 1 0.4766 0.1078 4.8668 37 1 1.5626 -0.5255 6.8977 38 1 3.9848 -0.0343 3.7407 39 1 3.7908 -1.6313 4.5038 40 1 3.7775 -1.3191 0.2358 41 1 3.9427 0.1516 1.2245 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172491039.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:44 Heat of formation + Delta-G solvation = -192.092485 kcal Electronic energy + Delta-G solvation = -22815.899442 eV Core-core repulsion = 19171.554910 eV Total energy + Delta-G solvation = -3644.344532 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.159 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.00150 -48.01497 -40.48309 -38.17623 -36.55255 -35.07715 -32.80218 -31.98403 -29.84883 -27.45639 -26.57612 -25.51086 -23.48134 -23.11764 -21.10767 -20.87223 -19.06455 -18.41502 -18.14213 -17.91014 -17.57754 -16.90305 -16.23198 -15.68798 -15.63852 -15.62799 -15.18535 -14.90943 -14.61357 -14.50734 -14.42073 -14.31766 -13.93627 -13.69075 -13.50640 -13.38600 -13.11194 -12.77848 -12.63321 -12.42179 -12.27261 -11.98271 -11.84195 -11.76718 -11.65277 -11.47942 -11.30884 -10.87094 -10.63880 -10.52846 -9.47184 -8.69068 -6.38939 1.51161 1.59915 1.77996 2.32985 2.55332 2.79578 2.98450 3.15320 3.23457 3.36581 3.48988 3.92442 3.93856 3.96889 4.09059 4.18820 4.30267 4.31701 4.36522 4.45032 4.50472 4.60266 4.63697 4.68267 4.72698 4.78033 4.86079 4.92315 5.01661 5.04804 5.19914 5.28049 5.39932 5.53596 5.84146 5.94753 6.05228 6.19674 6.60069 6.94690 7.41534 8.72280 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.026851 B = 0.004067 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.530708 B = 6882.635941 C = 7637.626523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.095 3.905 3 H 0.041 0.959 4 C -0.089 4.089 5 C 0.015 3.985 6 C -0.621 4.621 7 H 0.044 0.956 8 C -0.037 4.037 9 N -0.937 5.937 10 Si 1.117 2.883 11 H -0.272 1.272 12 H -0.280 1.280 13 H -0.272 1.272 14 N -0.534 5.534 15 C 0.051 3.949 16 C -0.080 4.080 17 H 0.075 0.925 18 C 0.090 3.910 19 O -0.593 6.593 20 C -0.141 4.141 21 C 0.289 3.711 22 F -0.209 7.209 23 F -0.205 7.205 24 C 0.011 3.989 25 H 0.057 0.943 26 H 0.080 0.920 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.047 0.953 30 H -0.011 1.011 31 H 0.000 1.000 32 H 0.257 0.743 33 H 0.055 0.945 34 H 0.102 0.898 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.400 0.600 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.325 0.255 22.971 23.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.012 4.012 3 H 0.059 0.941 4 C -0.127 4.127 5 C -0.022 4.022 6 C -0.659 4.659 7 H 0.062 0.938 8 C -0.234 4.234 9 N -0.574 5.574 10 Si 0.938 3.062 11 H -0.198 1.198 12 H -0.206 1.206 13 H -0.197 1.197 14 N -0.259 5.259 15 C -0.076 4.076 16 C -0.099 4.099 17 H 0.093 0.907 18 C 0.012 3.988 19 O -0.402 6.402 20 C -0.179 4.179 21 C 0.252 3.748 22 F -0.190 7.190 23 F -0.186 7.186 24 C -0.118 4.118 25 H 0.076 0.924 26 H 0.099 0.901 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.007 0.993 31 H 0.018 0.982 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.120 0.880 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.250 0.750 38 H 0.127 0.873 39 H 0.111 0.889 40 H 0.104 0.896 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.444 -0.533 20.891 20.948 hybrid contribution 0.200 0.803 1.674 1.868 sum 1.644 0.270 22.565 22.627 Atomic orbital electron populations 1.21829 0.93068 1.02418 1.02069 1.21556 0.96650 0.94811 0.88212 0.94103 1.21482 0.99279 0.98801 0.93174 1.19141 0.95202 0.94368 0.93493 1.22544 1.32350 1.16695 0.94350 0.93772 1.27356 0.95628 0.95569 1.04883 1.70886 1.31235 1.22184 1.33126 0.82934 0.75974 0.75319 0.71939 1.19794 1.20575 1.19740 1.61735 1.08499 1.52754 1.02902 1.22303 1.02706 0.95267 0.87372 1.21073 0.93675 1.00947 0.94215 0.90677 1.22038 1.00291 0.92445 0.84058 1.86431 1.87660 1.47952 1.18142 1.22555 0.98231 1.03072 0.94079 1.21271 0.73508 0.80656 0.99363 1.92982 1.31789 1.96475 1.97719 1.92983 1.84376 1.43736 1.97533 1.23022 0.90681 1.00227 0.97900 0.92427 0.90090 0.93105 0.93365 0.93408 0.99297 0.98178 0.93350 0.92638 0.87962 0.91560 0.91389 0.74977 0.87343 0.88919 0.89585 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 8.73 71.98 0.63 -3.40 16 2 C 0.10 3.07 2.17 44.92 0.10 3.16 16 3 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 4 C -0.09 -3.75 4.33 30.59 0.13 -3.61 16 5 C 0.02 0.80 3.84 29.85 0.11 0.91 16 6 C -0.62 -36.26 9.11 25.60 0.23 -36.03 16 7 H 0.04 2.55 7.74 -2.91 -0.02 2.53 16 8 C -0.04 -2.16 5.46 84.66 0.46 -1.70 16 9 N -0.94 -58.29 13.65 21.45 0.29 -57.99 16 10 Si 1.12 51.30 29.90 68.60 2.05 53.35 16 11 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 13 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 14 N -0.53 -14.77 4.46 -871.12 -3.89 -18.66 16 15 C 0.05 1.00 4.53 86.33 0.39 1.39 16 16 C -0.08 -1.48 2.46 -10.74 -0.03 -1.51 16 17 H 0.07 1.75 7.91 -2.39 -0.02 1.73 16 18 C 0.09 1.10 6.43 71.98 0.46 1.56 16 19 O -0.59 -8.25 13.25 -148.98 -1.97 -10.23 16 20 C -0.14 -2.84 4.68 30.67 0.14 -2.69 16 21 C 0.29 7.73 2.14 30.65 0.07 7.79 16 22 F -0.21 -5.95 17.07 44.97 0.77 -5.18 16 23 F -0.21 -6.57 16.60 44.97 0.75 -5.82 16 24 C 0.01 0.30 4.59 86.33 0.40 0.70 16 25 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.08 1.80 6.31 -2.38 -0.02 1.79 16 27 H 0.05 1.70 6.62 -2.38 -0.02 1.68 16 28 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.05 2.01 6.04 -2.39 -0.01 2.00 16 30 H -0.01 -0.61 8.01 -2.39 -0.02 -0.63 16 31 H 0.00 0.00 6.65 -2.39 -0.02 -0.02 16 32 H 0.26 16.04 7.22 -92.71 -0.67 15.38 16 33 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.10 1.78 6.06 -2.39 -0.01 1.76 16 35 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.40 1.72 9.12 -74.06 -0.68 1.04 16 38 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.09 1.92 7.90 -2.39 -0.02 1.90 16 40 H 0.09 2.82 5.81 -2.39 -0.01 2.81 16 41 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -70.71 325.26 1.55 -69.16 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 0.45 Total: 8.80 kcal Atomic # 6 Polarization: -36.53 SS G_CDS: 3.10 Total: -33.43 kcal Atomic # 7 Polarization: -73.06 SS G_CDS: -3.59 Total: -76.65 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -1.97 Total: -10.23 kcal Atomic # 9 Polarization: -12.52 SS G_CDS: 1.51 Total: -11.00 kcal Atomic # 14 Polarization: 51.30 SS G_CDS: 2.05 Total: 53.35 kcal Total: -70.71 1.55 -69.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491039.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.937 kcal (2) G-P(sol) polarization free energy of solvation -70.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds