Wall clock time and date at job start Mon Mar 30 2020 02:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.47290 * 2 1 4 4 C 1.52996 * 109.47006 * 120.00054 * 2 1 3 5 5 C 1.52998 * 109.46929 * 185.00107 * 4 2 1 6 6 C 1.50706 * 109.47348 * 179.97438 * 5 4 2 7 7 H 1.08005 * 119.99758 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00102 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00217 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99766 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47057 * 179.97438 * 10 8 6 12 12 H 1.48500 * 109.47389 * 300.00068 * 10 8 6 13 13 H 1.48504 * 109.47102 * 60.00417 * 10 8 6 14 14 N 1.46900 * 109.47213 * 239.99872 * 2 1 3 15 15 C 1.46852 * 110.99636 * 70.25522 * 14 2 1 16 16 C 1.53033 * 109.51948 * 174.16355 * 15 14 2 17 17 H 1.09000 * 109.50375 * 299.23454 * 16 15 14 18 18 C 1.53008 * 109.53780 * 179.14072 * 16 15 14 19 19 O 1.42895 * 109.47442 * 175.17748 * 18 16 15 20 20 C 1.53121 * 109.28183 * 59.17993 * 16 15 14 21 21 C 1.53119 * 109.15923 * 302.34457 * 20 16 15 22 22 F 1.39900 * 109.50218 * 297.71151 * 21 20 16 23 23 F 1.39892 * 109.50324 * 177.59689 * 21 20 16 24 24 C 1.46845 * 110.99881 * 306.04775 * 14 2 1 25 25 H 1.08992 * 109.46757 * 60.00015 * 1 2 3 26 26 H 1.08999 * 109.47047 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47043 * 300.00033 * 1 2 3 28 28 H 1.09000 * 109.47441 * 65.00197 * 4 2 1 29 29 H 1.09002 * 109.47087 * 304.99643 * 4 2 1 30 30 H 1.09001 * 109.47671 * 60.00109 * 5 4 2 31 31 H 1.09006 * 109.47297 * 299.99829 * 5 4 2 32 32 H 0.97001 * 119.99646 * 359.97438 * 9 8 6 33 33 H 1.09003 * 109.46211 * 294.17383 * 15 14 2 34 34 H 1.08993 * 109.46235 * 54.14797 * 15 14 2 35 35 H 1.09003 * 109.46641 * 295.17663 * 18 16 15 36 36 H 1.08998 * 109.46561 * 55.17162 * 18 16 15 37 37 H 0.96696 * 113.99789 * 180.02562 * 19 18 16 38 38 H 1.09005 * 109.52305 * 182.44153 * 20 16 15 39 39 H 1.09002 * 109.57345 * 62.28333 * 20 16 15 40 40 H 1.08998 * 109.46598 * 305.84974 * 24 14 2 41 41 H 1.09005 * 109.46493 * 65.83287 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6133 1.3137 6 6 4.0672 -1.3231 2.5445 7 1 3.3687 -1.8030 3.2140 8 6 5.4185 -1.3601 2.8157 9 7 6.2691 -0.7753 2.0007 10 14 6.0410 -2.2394 4.3417 11 1 7.5211 -2.1357 4.4036 12 1 5.4494 -1.6119 5.5507 13 1 5.6476 -3.6702 4.2837 14 7 2.0198 -0.6925 -1.1994 15 6 1.7585 0.0997 -2.4080 16 6 2.4080 -0.5801 -3.6154 17 1 3.4854 -0.6423 -3.4621 18 6 2.1179 0.2337 -4.8782 19 8 2.8170 -0.3391 -5.9851 20 6 1.8318 -1.9901 -3.7723 21 6 2.0744 -2.7785 -2.4823 22 9 3.4505 -2.9027 -2.2627 23 9 1.5025 -4.0500 -2.5976 24 6 1.4346 -2.0350 -1.3077 25 1 -0.3632 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.7517 -1.7715 1.2056 29 1 1.6054 -0.2617 2.1369 30 1 3.8533 0.4370 1.3573 31 1 3.9995 -1.0728 0.4259 32 1 5.9457 -0.3184 1.2085 33 1 0.6828 0.1739 -2.5681 34 1 2.1770 1.0986 -2.2849 35 1 1.0467 0.2222 -5.0797 36 1 2.4491 1.2618 -4.7319 37 1 2.6792 0.1271 -6.8210 38 1 2.3229 -2.4937 -4.6049 39 1 0.7608 -1.9275 -3.9650 40 1 1.6178 -2.5866 -0.3856 41 1 0.3605 -1.9507 -1.4732 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491141.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:53 Heat of formation + Delta-G solvation = -167.389027 kcal Electronic energy + Delta-G solvation = -23319.332223 eV Core-core repulsion = 19676.058914 eV Total energy + Delta-G solvation = -3643.273310 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.159 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.66932 -46.64337 -39.44720 -37.30828 -34.97959 -33.21978 -31.06794 -30.43991 -28.82179 -26.29519 -25.08894 -23.83505 -22.34564 -21.48493 -20.07964 -19.29257 -17.61008 -17.20691 -16.74365 -16.51485 -16.37594 -15.45511 -14.89874 -14.63227 -14.30504 -14.04629 -13.63460 -13.49095 -13.39017 -13.26390 -12.98642 -12.83691 -12.56178 -12.33730 -12.13665 -11.96854 -11.95148 -11.42741 -11.08784 -11.02762 -10.86270 -10.70749 -10.49882 -10.21474 -10.14485 -10.01079 -9.78855 -9.57071 -8.37967 -8.19783 -8.06422 -6.20239 -3.87895 3.51251 3.52989 3.54428 3.72528 3.90723 4.06826 4.24221 4.43639 4.54636 4.66255 4.92019 5.03803 5.07699 5.14380 5.14926 5.25591 5.27630 5.39983 5.44600 5.48005 5.57236 5.60125 5.68027 5.73914 5.94573 5.98770 6.09110 6.12893 6.21878 6.45775 6.64834 7.07558 7.14477 7.24587 7.38585 7.63690 7.86038 8.39134 8.64079 9.06004 9.84218 11.20912 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.019137 B = 0.005040 C = 0.004885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.786275 B = 5554.170359 C = 5730.866526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.084 3.916 3 H 0.084 0.916 4 C -0.097 4.097 5 C 0.016 3.984 6 C -0.602 4.602 7 H 0.043 0.957 8 C 0.015 3.985 9 N -0.915 5.915 10 Si 1.066 2.934 11 H -0.283 1.283 12 H -0.290 1.290 13 H -0.289 1.289 14 N -0.511 5.511 15 C 0.056 3.944 16 C -0.086 4.086 17 H 0.100 0.900 18 C 0.086 3.914 19 O -0.570 6.570 20 C -0.148 4.148 21 C 0.292 3.708 22 F -0.182 7.182 23 F -0.205 7.205 24 C 0.015 3.985 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.000 1.000 31 H 0.025 0.975 32 H 0.270 0.730 33 H 0.037 0.963 34 H 0.085 0.915 35 H 0.045 0.955 36 H 0.052 0.948 37 H 0.379 0.621 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.741 2.644 -14.313 20.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.024 4.024 3 H 0.102 0.898 4 C -0.135 4.135 5 C -0.021 4.021 6 C -0.641 4.641 7 H 0.062 0.938 8 C -0.189 4.189 9 N -0.551 5.551 10 Si 0.894 3.106 11 H -0.209 1.209 12 H -0.217 1.217 13 H -0.216 1.216 14 N -0.234 5.234 15 C -0.072 4.072 16 C -0.105 4.105 17 H 0.118 0.882 18 C 0.008 3.992 19 O -0.375 6.375 20 C -0.186 4.186 21 C 0.256 3.744 22 F -0.163 7.163 23 F -0.186 7.186 24 C -0.114 4.114 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.018 0.982 31 H 0.044 0.956 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.225 0.775 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.125 0.875 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.636 1.752 -12.938 17.489 hybrid contribution -2.496 0.698 -1.301 2.900 sum -14.132 2.451 -14.239 20.211 Atomic orbital electron populations 1.22523 0.98329 1.01899 1.01789 1.21931 0.91466 0.98616 0.90362 0.89802 1.21625 1.00243 0.98439 0.93145 1.19133 0.89573 0.95970 0.97461 1.22099 0.94539 1.37961 1.09477 0.93848 1.25748 0.93524 0.96938 1.02701 1.70747 1.37294 1.33347 1.13740 0.83602 0.76148 0.75871 0.74933 1.20861 1.21664 1.21598 1.61858 1.58580 1.00831 1.02172 1.22114 0.98007 0.97730 0.89342 1.21129 1.03340 0.93081 0.92943 0.88164 1.22078 0.94989 0.95908 0.86229 1.86509 1.73339 1.58142 1.19539 1.22534 1.03053 0.96670 0.96330 1.20970 0.76384 0.79786 0.97310 1.93076 1.31289 1.96024 1.95892 1.92978 1.84861 1.43664 1.97095 1.23013 0.97062 0.92412 0.98931 0.93217 0.92502 0.91776 0.93193 0.92800 0.98193 0.95639 0.91932 0.94484 0.89709 0.93661 0.92932 0.77460 0.88853 0.89684 0.87489 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.34 8.44 37.16 0.31 -2.02 16 2 C 0.08 1.33 2.31 -67.71 -0.16 1.18 16 3 H 0.08 1.35 7.98 -51.93 -0.41 0.93 16 4 C -0.10 -1.97 4.55 -26.73 -0.12 -2.09 16 5 C 0.02 0.41 4.17 -27.88 -0.12 0.29 16 6 C -0.60 -17.74 9.11 -34.44 -0.31 -18.05 16 7 H 0.04 1.26 7.74 -52.48 -0.41 0.85 16 8 C 0.01 0.44 5.46 -17.82 -0.10 0.34 16 9 N -0.91 -29.18 13.65 55.43 0.76 -28.42 16 10 Si 1.07 26.35 29.90 -169.99 -5.08 21.26 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 N -0.51 -8.05 3.99 -226.69 -0.91 -8.96 16 15 C 0.06 0.69 4.42 -3.83 -0.02 0.67 16 16 C -0.09 -1.05 2.46 -90.54 -0.22 -1.27 16 17 H 0.10 1.52 7.91 -51.93 -0.41 1.11 16 18 C 0.09 0.79 6.43 37.16 0.24 1.02 16 19 O -0.57 -5.60 13.24 -35.23 -0.47 -6.06 16 20 C -0.15 -1.85 4.68 -26.61 -0.12 -1.97 16 21 C 0.29 4.57 2.14 -26.65 -0.06 4.52 16 22 F -0.18 -3.57 16.60 2.25 0.04 -3.53 16 23 F -0.20 -3.26 17.07 2.25 0.04 -3.22 16 24 C 0.01 0.23 4.03 -3.83 -0.02 0.21 16 25 H 0.05 0.53 6.82 -51.93 -0.35 0.18 16 26 H 0.06 0.70 6.46 -51.93 -0.34 0.37 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 1.02 6.23 -51.93 -0.32 0.70 16 29 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.00 -0.01 8.01 -51.93 -0.42 -0.42 16 31 H 0.03 0.72 7.62 -51.93 -0.40 0.32 16 32 H 0.27 8.63 7.22 -40.82 -0.29 8.34 16 33 H 0.04 0.38 6.88 -51.93 -0.36 0.03 16 34 H 0.08 0.99 8.01 -51.93 -0.42 0.58 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.38 1.85 9.12 45.56 0.42 2.26 16 38 H 0.09 1.21 7.90 -51.93 -0.41 0.80 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.11 1.86 6.13 -51.93 -0.32 1.54 16 41 H 0.06 0.77 6.58 -51.93 -0.34 0.43 16 LS Contribution 325.30 15.07 4.90 4.90 Total: -1.00 -34.19 325.30 -7.10 -41.29 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -5.69 Total: -0.07 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: -0.69 Total: -17.18 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: -0.15 Total: -37.38 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.47 Total: -6.06 kcal Atomic # 9 Polarization: -6.83 SS G_CDS: 0.08 Total: -6.75 kcal Atomic # 14 Polarization: 26.35 SS G_CDS: -5.08 Total: 21.26 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.19 -7.10 -41.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491141.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.102 kcal (2) G-P(sol) polarization free energy of solvation -34.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds