Wall clock time and date at job start Mon Mar 30 2020 02:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.47290 * 2 1 4 4 C 1.52996 * 109.47006 * 120.00054 * 2 1 3 5 5 C 1.52998 * 109.46929 * 185.00107 * 4 2 1 6 6 C 1.50706 * 109.47348 * 179.97438 * 5 4 2 7 7 H 1.08005 * 119.99758 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00102 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00217 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99766 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47057 * 179.97438 * 10 8 6 12 12 H 1.48500 * 109.47389 * 300.00068 * 10 8 6 13 13 H 1.48504 * 109.47102 * 60.00417 * 10 8 6 14 14 N 1.46900 * 109.47213 * 239.99872 * 2 1 3 15 15 C 1.46852 * 110.99636 * 70.25522 * 14 2 1 16 16 C 1.53033 * 109.51948 * 174.16355 * 15 14 2 17 17 H 1.09000 * 109.50375 * 299.23454 * 16 15 14 18 18 C 1.53008 * 109.53780 * 179.14072 * 16 15 14 19 19 O 1.42895 * 109.47442 * 175.17748 * 18 16 15 20 20 C 1.53121 * 109.28183 * 59.17993 * 16 15 14 21 21 C 1.53119 * 109.15923 * 302.34457 * 20 16 15 22 22 F 1.39900 * 109.50218 * 297.71151 * 21 20 16 23 23 F 1.39892 * 109.50324 * 177.59689 * 21 20 16 24 24 C 1.46845 * 110.99881 * 306.04775 * 14 2 1 25 25 H 1.08992 * 109.46757 * 60.00015 * 1 2 3 26 26 H 1.08999 * 109.47047 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47043 * 300.00033 * 1 2 3 28 28 H 1.09000 * 109.47441 * 65.00197 * 4 2 1 29 29 H 1.09002 * 109.47087 * 304.99643 * 4 2 1 30 30 H 1.09001 * 109.47671 * 60.00109 * 5 4 2 31 31 H 1.09006 * 109.47297 * 299.99829 * 5 4 2 32 32 H 0.97001 * 119.99646 * 359.97438 * 9 8 6 33 33 H 1.09003 * 109.46211 * 294.17383 * 15 14 2 34 34 H 1.08993 * 109.46235 * 54.14797 * 15 14 2 35 35 H 1.09003 * 109.46641 * 295.17663 * 18 16 15 36 36 H 1.08998 * 109.46561 * 55.17162 * 18 16 15 37 37 H 0.96696 * 113.99789 * 180.02562 * 19 18 16 38 38 H 1.09005 * 109.52305 * 182.44153 * 20 16 15 39 39 H 1.09002 * 109.57345 * 62.28333 * 20 16 15 40 40 H 1.08998 * 109.46598 * 305.84974 * 24 14 2 41 41 H 1.09005 * 109.46493 * 65.83287 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6133 1.3137 6 6 4.0672 -1.3231 2.5445 7 1 3.3687 -1.8030 3.2140 8 6 5.4185 -1.3601 2.8157 9 7 6.2691 -0.7753 2.0007 10 14 6.0410 -2.2394 4.3417 11 1 7.5211 -2.1357 4.4036 12 1 5.4494 -1.6119 5.5507 13 1 5.6476 -3.6702 4.2837 14 7 2.0198 -0.6925 -1.1994 15 6 1.7585 0.0997 -2.4080 16 6 2.4080 -0.5801 -3.6154 17 1 3.4854 -0.6423 -3.4621 18 6 2.1179 0.2337 -4.8782 19 8 2.8170 -0.3391 -5.9851 20 6 1.8318 -1.9901 -3.7723 21 6 2.0744 -2.7785 -2.4823 22 9 3.4505 -2.9027 -2.2627 23 9 1.5025 -4.0500 -2.5976 24 6 1.4346 -2.0350 -1.3077 25 1 -0.3632 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.7517 -1.7715 1.2056 29 1 1.6054 -0.2617 2.1369 30 1 3.8533 0.4370 1.3573 31 1 3.9995 -1.0728 0.4259 32 1 5.9457 -0.3184 1.2085 33 1 0.6828 0.1739 -2.5681 34 1 2.1770 1.0986 -2.2849 35 1 1.0467 0.2222 -5.0797 36 1 2.4491 1.2618 -4.7319 37 1 2.6792 0.1271 -6.8210 38 1 2.3229 -2.4937 -4.6049 39 1 0.7608 -1.9275 -3.9650 40 1 1.6178 -2.5866 -0.3856 41 1 0.3605 -1.9507 -1.4732 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172491141.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:53 Heat of formation + Delta-G solvation = -192.378576 kcal Electronic energy + Delta-G solvation = -23320.415851 eV Core-core repulsion = 19676.058914 eV Total energy + Delta-G solvation = -3644.356938 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.159 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.98072 -48.00101 -40.56877 -38.18524 -36.34361 -35.09262 -32.47365 -31.72268 -30.23471 -27.22045 -26.78499 -25.24658 -23.52701 -23.31538 -21.18642 -20.58333 -18.81316 -18.43995 -18.33914 -17.95280 -17.52897 -16.56150 -16.13953 -15.82640 -15.64514 -15.27768 -15.16340 -14.82965 -14.64849 -14.49464 -14.35928 -14.24111 -14.17129 -13.76499 -13.50497 -13.17099 -13.03076 -12.77521 -12.63139 -12.45841 -12.07468 -11.98154 -11.84472 -11.83683 -11.62003 -11.52213 -11.28747 -10.87924 -10.55859 -10.48694 -9.22483 -8.63657 -6.32749 1.50087 1.59888 1.78595 2.43177 2.58676 2.85252 3.03035 3.21272 3.25797 3.40564 3.50395 3.89304 3.98775 4.10310 4.15813 4.20388 4.29745 4.32501 4.38319 4.42726 4.51342 4.60556 4.63193 4.66928 4.74455 4.83221 4.90241 4.99420 5.02683 5.16686 5.20275 5.31128 5.49922 5.66569 5.98668 6.07770 6.12280 6.27920 6.65664 6.95173 7.49817 8.76892 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.019137 B = 0.005040 C = 0.004885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.786275 B = 5554.170359 C = 5730.866526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.091 3.909 3 H 0.081 0.919 4 C -0.088 4.088 5 C 0.023 3.977 6 C -0.620 4.620 7 H 0.046 0.954 8 C -0.042 4.042 9 N -0.940 5.940 10 Si 1.115 2.885 11 H -0.284 1.284 12 H -0.265 1.265 13 H -0.273 1.273 14 N -0.544 5.544 15 C 0.059 3.941 16 C -0.086 4.086 17 H 0.057 0.943 18 C 0.092 3.908 19 O -0.595 6.595 20 C -0.136 4.136 21 C 0.278 3.722 22 F -0.215 7.215 23 F -0.208 7.208 24 C 0.021 3.979 25 H 0.078 0.922 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.045 0.955 29 H 0.057 0.943 30 H -0.022 1.022 31 H -0.005 1.005 32 H 0.254 0.746 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.400 0.600 38 H 0.086 0.914 39 H 0.119 0.881 40 H 0.076 0.924 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.352 3.198 -14.829 22.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.016 4.016 3 H 0.099 0.901 4 C -0.126 4.126 5 C -0.014 4.014 6 C -0.658 4.658 7 H 0.064 0.936 8 C -0.239 4.239 9 N -0.578 5.578 10 Si 0.936 3.064 11 H -0.209 1.209 12 H -0.190 1.190 13 H -0.198 1.198 14 N -0.269 5.269 15 C -0.068 4.068 16 C -0.105 4.105 17 H 0.075 0.925 18 C 0.014 3.986 19 O -0.404 6.404 20 C -0.174 4.174 21 C 0.242 3.758 22 F -0.196 7.196 23 F -0.190 7.190 24 C -0.108 4.108 25 H 0.097 0.903 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.063 0.937 29 H 0.075 0.925 30 H -0.003 1.003 31 H 0.013 0.987 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.250 0.750 38 H 0.104 0.896 39 H 0.137 0.863 40 H 0.094 0.906 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.281 2.325 -13.485 19.778 hybrid contribution -1.655 0.510 -1.174 2.093 sum -15.936 2.835 -14.658 21.837 Atomic orbital electron populations 1.22396 0.94761 1.02653 1.03569 1.21705 0.94127 0.97384 0.88394 0.90134 1.21464 0.95905 0.99055 0.96189 1.18977 0.93767 0.93684 0.94949 1.22607 0.94974 1.37751 1.10455 0.93591 1.27405 0.94390 0.96950 1.05169 1.70894 1.37759 1.35044 1.14091 0.82978 0.75686 0.75700 0.71993 1.20907 1.19046 1.19832 1.61706 1.60088 1.01519 1.03552 1.22172 1.00060 0.97071 0.87521 1.21108 1.00732 0.93667 0.94992 0.92458 1.22038 0.96611 0.95391 0.84542 1.86456 1.73900 1.59159 1.20887 1.22516 1.05029 0.96011 0.93853 1.21520 0.74722 0.80044 0.99535 1.93008 1.34136 1.96219 1.96240 1.92961 1.84658 1.44123 1.97210 1.22919 0.98784 0.91838 0.97238 0.90334 0.92186 0.91130 0.93670 0.92475 1.00337 0.98667 0.93657 0.90970 0.89399 0.90607 0.91807 0.75004 0.89582 0.86280 0.90596 0.88769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.77 8.44 71.98 0.61 -3.16 16 2 C 0.09 2.81 2.31 44.92 0.10 2.92 16 3 H 0.08 2.52 7.98 -2.39 -0.02 2.50 16 4 C -0.09 -3.64 4.55 30.59 0.14 -3.50 16 5 C 0.02 1.27 4.17 29.85 0.12 1.40 16 6 C -0.62 -37.42 9.11 25.60 0.23 -37.19 16 7 H 0.05 2.69 7.74 -2.91 -0.02 2.66 16 8 C -0.04 -2.60 5.46 84.65 0.46 -2.13 16 9 N -0.94 -62.01 13.65 21.45 0.29 -61.72 16 10 Si 1.12 53.14 29.90 68.60 2.05 55.19 16 11 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 12 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 13 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 14 N -0.54 -16.86 3.99 -871.12 -3.48 -20.33 16 15 C 0.06 1.30 4.42 86.32 0.38 1.69 16 16 C -0.09 -1.98 2.46 -10.74 -0.03 -2.01 16 17 H 0.06 1.81 7.91 -2.39 -0.02 1.79 16 18 C 0.09 1.41 6.43 71.98 0.46 1.87 16 19 O -0.60 -10.52 13.24 -148.98 -1.97 -12.50 16 20 C -0.14 -3.19 4.68 30.67 0.14 -3.04 16 21 C 0.28 8.71 2.14 30.65 0.07 8.78 16 22 F -0.21 -8.93 16.60 44.97 0.75 -8.19 16 23 F -0.21 -6.57 17.07 44.97 0.77 -5.81 16 24 C 0.02 0.63 4.03 86.33 0.35 0.97 16 25 H 0.08 1.28 6.82 -2.39 -0.02 1.26 16 26 H 0.06 1.27 6.46 -2.39 -0.02 1.25 16 27 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.04 1.88 6.23 -2.39 -0.01 1.87 16 29 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 30 H -0.02 -1.26 8.01 -2.39 -0.02 -1.28 16 31 H -0.01 -0.30 7.62 -2.38 -0.02 -0.32 16 32 H 0.25 17.12 7.22 -92.71 -0.67 16.45 16 33 H 0.07 1.13 6.88 -2.39 -0.02 1.11 16 34 H 0.09 1.89 8.01 -2.39 -0.02 1.87 16 35 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.40 2.94 9.12 -74.06 -0.68 2.27 16 38 H 0.09 2.15 7.90 -2.38 -0.02 2.13 16 39 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.08 2.70 6.13 -2.39 -0.01 2.69 16 41 H 0.09 2.11 6.58 -2.38 -0.02 2.09 16 Total: -1.00 -78.21 325.30 1.90 -76.31 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 0.45 Total: 10.44 kcal Atomic # 6 Polarization: -36.45 SS G_CDS: 3.05 Total: -33.40 kcal Atomic # 7 Polarization: -78.87 SS G_CDS: -3.19 Total: -82.05 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: -1.97 Total: -12.50 kcal Atomic # 9 Polarization: -15.51 SS G_CDS: 1.51 Total: -13.99 kcal Atomic # 14 Polarization: 53.14 SS G_CDS: 2.05 Total: 55.19 kcal Total: -78.21 1.90 -76.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491141.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.067 kcal (2) G-P(sol) polarization free energy of solvation -78.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds