Wall clock time and date at job start Mon Mar 30 2020 02:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46520 * 2 1 4 4 C 1.53001 * 109.47236 * 240.00463 * 2 1 3 5 5 C 1.53002 * 109.46967 * 175.73803 * 4 2 1 6 6 C 1.50697 * 109.46875 * 174.33011 * 5 4 2 7 7 H 1.08005 * 120.00259 * 0.02562 * 6 5 4 8 8 C 1.37885 * 120.00094 * 179.97438 * 6 5 4 9 9 N 1.31509 * 119.99550 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00136 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47011 * 90.00055 * 10 8 6 12 12 H 1.48499 * 109.46933 * 210.00552 * 10 8 6 13 13 H 1.48500 * 109.47196 * 330.00056 * 10 8 6 14 14 N 1.46893 * 109.47461 * 120.00219 * 2 1 3 15 15 C 1.47843 * 111.00434 * 101.96352 * 14 2 1 16 16 C 1.54905 * 104.79897 * 146.36342 * 15 14 2 17 17 F 1.39897 * 110.99295 * 204.84686 * 16 15 14 18 18 F 1.39897 * 110.98848 * 81.02593 * 16 15 14 19 19 C 1.55143 * 101.65144 * 322.93691 * 16 15 14 20 20 C 1.47446 * 111.00087 * 222.81400 * 14 2 1 21 21 C 1.53001 * 110.02451 * 117.26048 * 20 14 2 22 22 C 1.52995 * 109.88861 * 356.14111 * 20 14 2 23 23 O 1.42904 * 109.47268 * 183.85458 * 22 20 14 24 24 H 1.08994 * 109.47285 * 295.02350 * 1 2 3 25 25 H 1.08997 * 109.47538 * 55.02698 * 1 2 3 26 26 H 1.09005 * 109.46902 * 175.02255 * 1 2 3 27 27 H 1.08997 * 109.47218 * 295.73697 * 4 2 1 28 28 H 1.09000 * 109.47136 * 55.73995 * 4 2 1 29 29 H 1.09001 * 109.46826 * 294.32700 * 5 4 2 30 30 H 1.09001 * 109.47233 * 54.32988 * 5 4 2 31 31 H 0.97003 * 120.00133 * 179.97438 * 9 8 6 32 32 H 1.09004 * 110.36554 * 27.53867 * 15 14 2 33 33 H 1.08998 * 110.38101 * 265.19943 * 15 14 2 34 34 H 1.09001 * 110.70308 * 277.26883 * 19 16 15 35 35 H 1.08995 * 110.70484 * 154.03426 * 19 16 15 36 36 H 1.09002 * 109.46868 * 299.58092 * 21 20 14 37 37 H 1.09001 * 109.47120 * 59.58403 * 21 20 14 38 38 H 1.08998 * 109.46823 * 179.58185 * 21 20 14 39 39 H 1.09006 * 109.46785 * 63.86162 * 22 20 14 40 40 H 1.08999 * 109.47522 * 303.86232 * 22 20 14 41 41 H 0.96698 * 114.00078 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 3.5663 -0.6289 -1.3040 6 6 4.0785 -1.4551 -2.4555 7 1 3.3847 -1.9919 -3.0857 8 6 5.4327 -1.5249 -2.7054 9 7 6.2773 -0.8708 -1.9384 10 14 6.0675 -2.5484 -4.1333 11 1 6.1378 -1.7054 -5.3538 12 1 7.4218 -3.0640 -3.8090 13 1 5.1475 -3.6894 -4.3720 14 7 2.0197 -0.6925 1.1993 15 6 2.4661 -2.0639 0.8742 16 6 3.6515 -2.3323 1.8347 17 9 4.5137 -3.3002 1.3085 18 9 3.1942 -2.7073 3.1025 19 6 4.3386 -0.9421 1.8805 20 6 3.1479 0.0369 1.8070 21 6 2.7717 0.5055 3.2141 22 6 3.5172 1.2412 0.9387 23 8 4.6669 1.8892 1.4870 24 1 -0.3633 0.4347 0.9311 25 1 -0.3634 0.5890 -0.8420 26 1 -0.3633 -1.0238 -0.0892 27 1 1.7405 -1.7685 -1.2120 28 1 1.6157 -0.2532 -2.1376 29 1 3.8627 0.4108 -1.4426 30 1 3.9867 -1.0054 -0.3714 31 1 7.2301 -0.9202 -2.1139 32 1 2.7979 -2.1191 -0.1626 33 1 1.6623 -2.7776 1.0548 34 1 4.9993 -0.8103 1.0237 35 1 4.8861 -0.8134 2.8142 36 1 1.9111 1.1721 3.1570 37 1 2.5221 -0.3583 3.8301 38 1 3.6140 1.0367 3.6573 39 1 2.6823 1.9416 0.9150 40 1 3.7382 0.9049 -0.0742 41 1 4.9579 2.6637 0.9866 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492018.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:06 Heat of formation + Delta-G solvation = -108.759781 kcal Electronic energy + Delta-G solvation = -24657.965289 eV Core-core repulsion = 21017.234334 eV Total energy + Delta-G solvation = -3640.730955 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.159 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.31450 -46.48009 -40.41225 -36.13160 -34.39108 -32.93953 -30.99103 -30.05016 -28.37413 -26.66741 -25.17151 -24.57653 -22.06610 -21.28929 -20.09948 -18.39906 -17.45390 -17.10110 -16.50652 -16.19373 -15.38391 -14.88627 -14.67605 -14.56399 -14.02767 -13.78464 -13.70759 -13.37377 -13.02575 -12.82686 -12.72509 -12.40819 -12.24801 -11.96532 -11.78226 -11.67092 -11.41348 -11.25855 -11.00348 -10.91404 -10.88674 -10.56306 -10.53308 -10.22538 -9.91512 -9.76799 -9.53440 -9.39876 -8.82032 -8.43908 -7.98657 -6.11421 -4.14387 3.26232 3.34030 3.36553 3.89213 4.16554 4.37312 4.39900 4.59683 4.73040 5.06633 5.24656 5.30071 5.44521 5.46358 5.54783 5.64460 5.73556 5.80944 5.98392 6.00195 6.05868 6.07684 6.13428 6.20797 6.25432 6.27399 6.39387 6.49337 6.51407 6.60764 6.65142 6.84216 7.22963 7.29414 7.43871 7.55209 7.84519 7.99059 8.26666 8.89493 9.51091 10.98757 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.016659 B = 0.007744 C = 0.007253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.328367 B = 3614.885959 C = 3859.372124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.042 3.958 3 H 0.090 0.910 4 C -0.147 4.147 5 C -0.003 4.003 6 C -0.527 4.527 7 H 0.055 0.945 8 C 0.063 3.937 9 N -0.888 5.888 10 Si 0.890 3.110 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.274 1.274 14 N -0.498 5.498 15 C -0.026 4.026 16 C 0.271 3.729 17 F -0.187 7.187 18 F -0.197 7.197 19 C -0.160 4.160 20 C 0.108 3.892 21 C -0.123 4.123 22 C 0.032 3.968 23 O -0.570 6.570 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.023 0.977 30 H 0.039 0.961 31 H 0.262 0.738 32 H 0.141 0.859 33 H 0.090 0.910 34 H 0.125 0.875 35 H 0.089 0.911 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.044 0.956 40 H 0.103 0.897 41 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.212 3.593 6.602 10.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.065 4.065 3 H 0.108 0.892 4 C -0.185 4.185 5 C -0.039 4.039 6 C -0.565 4.565 7 H 0.074 0.926 8 C -0.139 4.139 9 N -0.526 5.526 10 Si 0.718 3.282 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.198 1.198 14 N -0.223 5.223 15 C -0.154 4.154 16 C 0.234 3.766 17 F -0.168 7.168 18 F -0.178 7.178 19 C -0.198 4.198 20 C 0.019 3.981 21 C -0.181 4.181 22 C -0.045 4.045 23 O -0.374 6.374 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.040 0.960 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.158 0.842 33 H 0.108 0.892 34 H 0.143 0.857 35 H 0.107 0.893 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.121 0.879 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -7.495 3.102 7.450 11.014 hybrid contribution 1.136 -0.258 -1.672 2.037 sum -6.360 2.844 5.778 9.051 Atomic orbital electron populations 1.21728 0.94869 1.01556 1.00840 1.22415 0.95543 0.99490 0.89097 0.89222 1.22351 1.00202 0.99975 0.95959 1.19790 0.88550 0.97010 0.98560 1.21152 0.91906 1.29814 1.13645 0.92638 1.24968 0.97058 0.95502 0.96381 1.69909 1.02625 1.41884 1.38205 0.86621 0.78372 0.80628 0.82592 1.20745 1.21145 1.19843 1.63947 1.30425 1.00926 1.26963 1.24785 0.95809 0.92001 1.02758 1.22016 0.89431 0.86514 0.78647 1.93022 1.71397 1.66153 1.86236 1.92951 1.89573 1.92809 1.42486 1.23834 0.98953 0.90397 1.06626 1.21481 0.88626 0.92495 0.95542 1.21731 1.00986 1.00928 0.94482 1.23726 0.87152 0.93744 0.99882 1.86381 1.47661 1.47229 1.56103 0.92728 0.92848 0.92955 0.91793 0.92176 0.95954 0.94346 0.92822 0.84206 0.89161 0.85707 0.89289 0.92751 0.92241 0.91933 0.93837 0.87945 0.77712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 9.52 37.16 0.35 -1.42 16 2 C 0.04 0.67 2.47 -67.71 -0.17 0.50 16 3 H 0.09 1.40 4.11 -51.93 -0.21 1.19 16 4 C -0.15 -2.72 4.08 -26.73 -0.11 -2.83 16 5 C 0.00 -0.07 2.52 -27.88 -0.07 -0.15 16 6 C -0.53 -13.81 9.10 -34.44 -0.31 -14.13 16 7 H 0.06 1.44 7.74 -52.48 -0.41 1.03 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -24.81 13.29 55.43 0.74 -24.08 16 10 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 14 N -0.50 -8.26 4.65 -207.90 -0.97 -9.22 16 15 C -0.03 -0.47 4.94 -2.30 -0.01 -0.48 16 16 C 0.27 5.15 2.52 -24.59 -0.06 5.09 16 17 F -0.19 -3.99 17.23 2.25 0.04 -3.95 16 18 F -0.20 -3.63 16.74 2.25 0.04 -3.59 16 19 C -0.16 -2.99 4.63 -24.91 -0.12 -3.11 16 20 C 0.11 1.81 0.67 -130.61 -0.09 1.72 16 21 C -0.12 -1.85 8.59 37.16 0.32 -1.53 16 22 C 0.03 0.53 4.16 37.15 0.15 0.68 16 23 O -0.57 -9.14 12.72 -35.23 -0.45 -9.59 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 1.20 6.20 -51.93 -0.32 0.88 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.02 0.55 6.22 -51.93 -0.32 0.22 16 30 H 0.04 0.89 2.41 -51.93 -0.12 0.77 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.14 2.84 3.08 -51.93 -0.16 2.68 16 33 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.12 2.74 6.29 -51.93 -0.33 2.42 16 35 H 0.09 1.57 7.83 -51.93 -0.41 1.16 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.90 7.64 -51.93 -0.40 0.50 16 38 H 0.06 0.92 7.76 -51.93 -0.40 0.52 16 39 H 0.04 0.64 6.67 -51.93 -0.35 0.30 16 40 H 0.10 1.95 2.76 -51.93 -0.14 1.81 16 41 H 0.38 4.58 9.12 45.56 0.42 5.00 16 LS Contribution 309.13 15.07 4.66 4.66 Total: -1.00 -28.27 309.13 -6.00 -34.27 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -4.83 Total: 9.51 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -0.21 Total: -14.02 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: -0.23 Total: -33.30 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -0.45 Total: -9.59 kcal Atomic # 9 Polarization: -7.62 SS G_CDS: 0.08 Total: -7.54 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.27 -6.00 -34.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492018.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.488 kcal (2) G-P(sol) polarization free energy of solvation -28.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds