Wall clock time and date at job start Mon Mar 30 2020 02:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46520 * 2 1 4 4 C 1.53001 * 109.47236 * 240.00463 * 2 1 3 5 5 C 1.53002 * 109.46967 * 175.73803 * 4 2 1 6 6 C 1.50697 * 109.46875 * 174.33011 * 5 4 2 7 7 H 1.08005 * 120.00259 * 0.02562 * 6 5 4 8 8 C 1.37885 * 120.00094 * 179.97438 * 6 5 4 9 9 N 1.31509 * 119.99550 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00136 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47011 * 90.00055 * 10 8 6 12 12 H 1.48499 * 109.46933 * 210.00552 * 10 8 6 13 13 H 1.48500 * 109.47196 * 330.00056 * 10 8 6 14 14 N 1.46893 * 109.47461 * 120.00219 * 2 1 3 15 15 C 1.47843 * 111.00434 * 101.96352 * 14 2 1 16 16 C 1.54905 * 104.79897 * 146.36342 * 15 14 2 17 17 F 1.39897 * 110.99295 * 204.84686 * 16 15 14 18 18 F 1.39897 * 110.98848 * 81.02593 * 16 15 14 19 19 C 1.55143 * 101.65144 * 322.93691 * 16 15 14 20 20 C 1.47446 * 111.00087 * 222.81400 * 14 2 1 21 21 C 1.53001 * 110.02451 * 117.26048 * 20 14 2 22 22 C 1.52995 * 109.88861 * 356.14111 * 20 14 2 23 23 O 1.42904 * 109.47268 * 183.85458 * 22 20 14 24 24 H 1.08994 * 109.47285 * 295.02350 * 1 2 3 25 25 H 1.08997 * 109.47538 * 55.02698 * 1 2 3 26 26 H 1.09005 * 109.46902 * 175.02255 * 1 2 3 27 27 H 1.08997 * 109.47218 * 295.73697 * 4 2 1 28 28 H 1.09000 * 109.47136 * 55.73995 * 4 2 1 29 29 H 1.09001 * 109.46826 * 294.32700 * 5 4 2 30 30 H 1.09001 * 109.47233 * 54.32988 * 5 4 2 31 31 H 0.97003 * 120.00133 * 179.97438 * 9 8 6 32 32 H 1.09004 * 110.36554 * 27.53867 * 15 14 2 33 33 H 1.08998 * 110.38101 * 265.19943 * 15 14 2 34 34 H 1.09001 * 110.70308 * 277.26883 * 19 16 15 35 35 H 1.08995 * 110.70484 * 154.03426 * 19 16 15 36 36 H 1.09002 * 109.46868 * 299.58092 * 21 20 14 37 37 H 1.09001 * 109.47120 * 59.58403 * 21 20 14 38 38 H 1.08998 * 109.46823 * 179.58185 * 21 20 14 39 39 H 1.09006 * 109.46785 * 63.86162 * 22 20 14 40 40 H 1.08999 * 109.47522 * 303.86232 * 22 20 14 41 41 H 0.96698 * 114.00078 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 3.5663 -0.6289 -1.3040 6 6 4.0785 -1.4551 -2.4555 7 1 3.3847 -1.9919 -3.0857 8 6 5.4327 -1.5249 -2.7054 9 7 6.2773 -0.8708 -1.9384 10 14 6.0675 -2.5484 -4.1333 11 1 6.1378 -1.7054 -5.3538 12 1 7.4218 -3.0640 -3.8090 13 1 5.1475 -3.6894 -4.3720 14 7 2.0197 -0.6925 1.1993 15 6 2.4661 -2.0639 0.8742 16 6 3.6515 -2.3323 1.8347 17 9 4.5137 -3.3002 1.3085 18 9 3.1942 -2.7073 3.1025 19 6 4.3386 -0.9421 1.8805 20 6 3.1479 0.0369 1.8070 21 6 2.7717 0.5055 3.2141 22 6 3.5172 1.2412 0.9387 23 8 4.6669 1.8892 1.4870 24 1 -0.3633 0.4347 0.9311 25 1 -0.3634 0.5890 -0.8420 26 1 -0.3633 -1.0238 -0.0892 27 1 1.7405 -1.7685 -1.2120 28 1 1.6157 -0.2532 -2.1376 29 1 3.8627 0.4108 -1.4426 30 1 3.9867 -1.0054 -0.3714 31 1 7.2301 -0.9202 -2.1139 32 1 2.7979 -2.1191 -0.1626 33 1 1.6623 -2.7776 1.0548 34 1 4.9993 -0.8103 1.0237 35 1 4.8861 -0.8134 2.8142 36 1 1.9111 1.1721 3.1570 37 1 2.5221 -0.3583 3.8301 38 1 3.6140 1.0367 3.6573 39 1 2.6823 1.9416 0.9150 40 1 3.7382 0.9049 -0.0742 41 1 4.9579 2.6637 0.9866 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172492018.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:06 Heat of formation + Delta-G solvation = -128.196676 kcal Electronic energy + Delta-G solvation = -24658.808136 eV Core-core repulsion = 21017.234334 eV Total energy + Delta-G solvation = -3641.573802 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.159 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.88322 -48.06202 -41.80279 -37.43665 -35.92596 -34.73075 -32.38123 -31.72661 -29.70244 -27.94892 -26.97973 -25.96174 -23.55847 -22.94114 -21.51102 -19.77474 -18.91872 -18.62476 -18.37731 -17.59828 -16.91773 -16.58791 -16.27375 -16.15645 -15.40217 -15.23008 -15.05334 -14.86760 -14.52649 -14.39997 -14.28325 -13.89600 -13.63345 -13.31830 -13.16749 -13.13042 -12.99006 -12.92351 -12.54650 -12.36564 -12.30216 -12.24051 -11.98772 -11.79209 -11.46779 -11.36727 -11.15650 -10.81767 -10.52848 -10.36829 -9.37315 -8.17296 -6.25110 1.37114 1.39822 1.48169 2.40445 2.49243 2.71322 2.91330 3.16436 3.22821 3.38232 3.64215 3.95752 4.03506 4.14632 4.21932 4.29376 4.40845 4.51939 4.59503 4.63091 4.68124 4.81249 4.86408 4.89716 4.92023 5.01732 5.04037 5.10071 5.15340 5.24279 5.40927 5.49238 5.55831 5.69407 5.84968 5.87663 6.05764 6.28886 6.88422 6.89647 7.42682 8.91601 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.016659 B = 0.007744 C = 0.007253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.328367 B = 3614.885959 C = 3859.372124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.045 3.955 3 H 0.096 0.904 4 C -0.137 4.137 5 C 0.002 3.998 6 C -0.541 4.541 7 H 0.052 0.948 8 C 0.013 3.987 9 N -0.916 5.916 10 Si 0.945 3.055 11 H -0.274 1.274 12 H -0.288 1.288 13 H -0.269 1.269 14 N -0.487 5.487 15 C -0.021 4.021 16 C 0.267 3.733 17 F -0.205 7.205 18 F -0.191 7.191 19 C -0.156 4.156 20 C 0.106 3.894 21 C -0.115 4.115 22 C 0.038 3.962 23 O -0.581 6.581 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.004 0.996 30 H 0.035 0.965 31 H 0.260 0.740 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.902 4.136 6.999 12.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.062 4.062 3 H 0.113 0.887 4 C -0.175 4.175 5 C -0.034 4.034 6 C -0.580 4.580 7 H 0.071 0.929 8 C -0.186 4.186 9 N -0.556 5.556 10 Si 0.771 3.229 11 H -0.200 1.200 12 H -0.213 1.213 13 H -0.193 1.193 14 N -0.212 5.212 15 C -0.149 4.149 16 C 0.230 3.770 17 F -0.186 7.186 18 F -0.172 7.172 19 C -0.195 4.195 20 C 0.016 3.984 21 C -0.173 4.173 22 C -0.040 4.040 23 O -0.388 6.388 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.022 0.978 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.135 0.865 33 H 0.125 0.875 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -9.197 3.656 7.834 12.622 hybrid contribution 1.694 -0.417 -1.790 2.499 sum -7.504 3.239 6.044 10.165 Atomic orbital electron populations 1.21678 0.92289 1.02070 1.02246 1.22462 0.97400 0.99091 0.87271 0.88677 1.22206 0.97201 1.00343 0.97773 1.19717 0.91460 0.95133 0.97085 1.21618 0.92078 1.29796 1.14460 0.92930 1.25694 0.97571 0.96696 0.98641 1.70024 1.02589 1.43294 1.39660 0.85753 0.77593 0.79434 0.80140 1.19982 1.21348 1.19323 1.64125 1.29841 1.00193 1.27023 1.24693 0.95774 0.93427 1.01034 1.22180 0.89696 0.86108 0.79045 1.92982 1.72146 1.66914 1.86582 1.92955 1.89443 1.92747 1.42068 1.23731 0.99464 0.91085 1.05200 1.21605 0.87802 0.92035 0.96911 1.21659 1.01704 1.01131 0.92790 1.23553 0.88041 0.94201 0.98167 1.86342 1.47762 1.48151 1.56520 0.91436 0.91294 0.92974 0.92072 0.91820 0.97774 0.94732 0.93096 0.86526 0.87479 0.89371 0.88666 0.91039 0.92386 0.91759 0.91362 0.90763 0.75896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 9.52 71.98 0.69 -2.24 16 2 C 0.05 1.34 2.47 44.92 0.11 1.45 16 3 H 0.10 2.75 4.11 -2.39 -0.01 2.74 16 4 C -0.14 -4.97 4.08 30.60 0.12 -4.85 16 5 C 0.00 0.09 2.52 29.85 0.08 0.17 16 6 C -0.54 -28.78 9.10 25.60 0.23 -28.55 16 7 H 0.05 2.75 7.74 -2.91 -0.02 2.72 16 8 C 0.01 0.73 5.46 84.66 0.46 1.19 16 9 N -0.92 -52.49 13.29 21.45 0.28 -52.21 16 10 Si 0.94 43.53 29.54 68.60 2.03 45.55 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 13 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 14 N -0.49 -15.25 4.65 -811.67 -3.77 -19.02 16 15 C -0.02 -0.75 4.94 86.77 0.43 -0.32 16 16 C 0.27 10.11 2.52 31.98 0.08 10.19 16 17 F -0.21 -8.92 17.23 44.97 0.78 -8.15 16 18 F -0.19 -6.83 16.74 44.97 0.75 -6.08 16 19 C -0.16 -5.88 4.63 31.78 0.15 -5.73 16 20 C 0.11 3.40 0.67 3.87 0.00 3.41 16 21 C -0.12 -3.16 8.59 71.98 0.62 -2.54 16 22 C 0.04 1.20 4.16 71.98 0.30 1.50 16 23 O -0.58 -18.13 12.72 -148.98 -1.90 -20.02 16 24 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 27 H 0.06 2.25 6.20 -2.39 -0.01 2.23 16 28 H 0.06 2.23 8.14 -2.39 -0.02 2.22 16 29 H 0.00 0.22 6.22 -2.39 -0.01 0.20 16 30 H 0.03 1.64 2.41 -2.39 -0.01 1.64 16 31 H 0.26 14.37 8.31 -92.71 -0.77 13.59 16 32 H 0.12 4.75 3.08 -2.39 -0.01 4.74 16 33 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 34 H 0.09 4.03 6.29 -2.39 -0.02 4.01 16 35 H 0.09 3.37 7.83 -2.39 -0.02 3.35 16 36 H 0.07 1.72 8.14 -2.39 -0.02 1.71 16 37 H 0.06 1.61 7.64 -2.39 -0.02 1.59 16 38 H 0.06 1.74 7.76 -2.39 -0.02 1.73 16 39 H 0.07 1.83 6.67 -2.38 -0.02 1.82 16 40 H 0.07 2.84 2.76 -2.39 -0.01 2.83 16 41 H 0.39 9.21 9.12 -74.06 -0.68 8.53 16 Total: -1.00 -60.44 309.13 1.83 -58.61 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: 0.39 Total: 27.65 kcal Atomic # 6 Polarization: -29.60 SS G_CDS: 3.27 Total: -26.33 kcal Atomic # 7 Polarization: -67.75 SS G_CDS: -3.49 Total: -71.23 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -1.90 Total: -20.02 kcal Atomic # 9 Polarization: -15.75 SS G_CDS: 1.53 Total: -14.23 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -60.44 1.83 -58.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492018.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.586 kcal (2) G-P(sol) polarization free energy of solvation -60.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds