Wall clock time and date at job start Mon Mar 30 2020 02:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46840 * 2 1 4 4 C 1.53000 * 109.47091 * 119.99570 * 2 1 3 5 5 C 1.52996 * 109.46918 * 197.57957 * 4 2 1 6 6 C 1.50711 * 109.46841 * 174.12396 * 5 4 2 7 7 H 1.07994 * 119.99855 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99648 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99422 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 120.00185 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.47161 * 90.00191 * 10 8 6 12 12 H 1.48497 * 109.46907 * 209.99714 * 10 8 6 13 13 H 1.48500 * 109.47179 * 330.00120 * 10 8 6 14 14 N 1.46896 * 109.47304 * 240.00045 * 2 1 3 15 15 C 1.48529 * 110.99816 * 184.97947 * 14 2 1 16 16 C 1.55104 * 103.28728 * 200.33103 * 15 14 2 17 17 F 1.39906 * 110.70768 * 278.99593 * 16 15 14 18 18 F 1.39896 * 110.81821 * 155.65870 * 16 15 14 19 19 C 1.54597 * 102.84395 * 37.30058 * 16 15 14 20 20 C 1.47896 * 111.00351 * 67.58145 * 14 2 1 21 21 C 1.52998 * 109.92023 * 26.48830 * 20 14 2 22 22 C 1.53002 * 109.91561 * 265.19658 * 20 14 2 23 23 O 1.42893 * 109.47253 * 185.92566 * 22 20 14 24 24 H 1.09001 * 109.47296 * 293.28432 * 1 2 3 25 25 H 1.08995 * 109.47006 * 53.28871 * 1 2 3 26 26 H 1.09000 * 109.46678 * 173.28771 * 1 2 3 27 27 H 1.09007 * 109.46812 * 317.57651 * 4 2 1 28 28 H 1.08993 * 109.47303 * 77.57428 * 4 2 1 29 29 H 1.09000 * 109.46973 * 294.11873 * 5 4 2 30 30 H 1.09002 * 109.47531 * 54.12640 * 5 4 2 31 31 H 0.97006 * 119.99588 * 180.02562 * 9 8 6 32 32 H 1.09004 * 110.66839 * 318.70872 * 15 14 2 33 33 H 1.09006 * 110.67228 * 81.84175 * 15 14 2 34 34 H 1.08996 * 110.31095 * 219.19223 * 19 16 15 35 35 H 1.09001 * 110.30712 * 97.11662 * 19 16 15 36 36 H 1.08990 * 109.47354 * 179.04737 * 21 20 14 37 37 H 1.09000 * 109.46899 * 299.05063 * 21 20 14 38 38 H 1.09001 * 109.46943 * 59.04415 * 21 20 14 39 39 H 1.09006 * 109.47365 * 305.92950 * 22 20 14 40 40 H 1.09004 * 109.47032 * 65.92666 * 22 20 14 41 41 H 0.96706 * 114.00096 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5065 -0.3550 1.4865 6 6 3.9673 -0.9483 2.7931 7 1 3.2828 -1.5287 3.3938 8 6 5.2631 -0.7508 3.2208 9 7 5.6650 -1.2681 4.3612 10 14 6.4476 0.2513 2.1807 11 1 6.3636 1.6810 2.5734 12 1 7.8324 -0.2403 2.3952 13 1 6.0886 0.1099 0.7467 14 7 2.0198 -0.6925 -1.1994 15 6 3.4996 -0.8173 -1.1750 16 6 3.8618 -1.0562 -2.6641 17 9 3.6686 -2.3977 -3.0111 18 9 5.1780 -0.6606 -2.9253 19 6 2.8589 -0.1479 -3.4117 20 6 1.7000 0.0752 -2.4224 21 6 1.5799 1.5632 -2.0873 22 6 0.3910 -0.4334 -3.0297 23 8 0.1619 0.2175 -4.2810 24 1 -0.3634 0.4062 0.9440 25 1 -0.3633 0.6143 -0.8238 26 1 -0.3633 -1.0206 -0.1201 27 1 1.4459 -0.4184 2.1116 28 1 1.9527 -1.7984 1.1081 29 1 4.1156 -0.7498 0.6734 30 1 3.6088 0.7295 1.5238 31 1 6.5766 -1.1289 4.6624 32 1 3.9574 0.1029 -0.8120 33 1 3.8040 -1.6669 -0.5636 34 1 2.4973 -0.6443 -4.3122 35 1 3.3269 0.8029 -3.6666 36 1 1.3611 2.1238 -2.9960 37 1 0.7748 1.7097 -1.3673 38 1 2.5183 1.9163 -1.6597 39 1 0.4576 -1.5100 -3.1870 40 1 -0.4333 -0.2157 -2.3506 41 1 -0.6526 -0.0574 -4.7240 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492019.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:09 Heat of formation + Delta-G solvation = -132.149057 kcal Electronic energy + Delta-G solvation = -23898.281774 eV Core-core repulsion = 20256.536584 eV Total energy + Delta-G solvation = -3641.745190 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.159 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.68447 -46.85221 -40.25969 -36.80982 -34.69693 -32.83724 -31.75266 -30.06875 -28.52770 -26.87616 -25.71108 -24.98414 -21.95096 -20.90810 -20.38692 -18.92548 -17.71712 -17.37437 -16.94750 -16.55278 -15.67564 -15.57311 -15.08303 -14.68989 -14.33418 -14.21870 -13.82062 -13.39565 -13.22088 -13.10619 -12.87667 -12.71754 -12.61312 -12.54324 -12.26432 -12.03563 -11.69999 -11.45633 -11.40897 -11.14672 -10.94181 -10.87088 -10.66324 -10.49664 -10.00565 -9.98874 -9.66685 -9.47429 -9.06587 -8.52832 -8.41027 -6.05847 -4.03148 3.28023 3.37161 3.37475 3.41422 3.79329 3.96288 4.21871 4.42668 4.49451 4.57738 4.84560 5.02663 5.08450 5.21506 5.26955 5.29179 5.41100 5.45988 5.48437 5.56575 5.65752 5.67472 5.82642 5.88575 5.93422 6.03211 6.06858 6.12881 6.30549 6.33522 6.62051 6.75616 6.91038 7.04722 7.25554 7.41364 7.44180 7.77540 8.52445 8.99640 9.56734 11.07791 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.019809 B = 0.006609 C = 0.005577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.174409 B = 4235.883305 C = 5019.161336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 H 0.055 0.945 4 C -0.100 4.100 5 C -0.037 4.037 6 C -0.518 4.518 7 H 0.071 0.929 8 C 0.067 3.933 9 N -0.903 5.903 10 Si 0.875 3.125 11 H -0.278 1.278 12 H -0.287 1.287 13 H -0.265 1.265 14 N -0.492 5.492 15 C 0.008 3.992 16 C 0.270 3.730 17 F -0.187 7.187 18 F -0.195 7.195 19 C -0.151 4.151 20 C 0.095 3.905 21 C -0.175 4.175 22 C 0.091 3.909 23 O -0.575 6.575 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.034 0.966 30 H 0.007 0.993 31 H 0.263 0.737 32 H 0.085 0.915 33 H 0.125 0.875 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.882 3.920 -16.800 20.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.045 4.045 3 H 0.073 0.927 4 C -0.138 4.138 5 C -0.074 4.074 6 C -0.556 4.556 7 H 0.089 0.911 8 C -0.134 4.134 9 N -0.542 5.542 10 Si 0.702 3.298 11 H -0.204 1.204 12 H -0.213 1.213 13 H -0.190 1.190 14 N -0.218 5.218 15 C -0.120 4.120 16 C 0.233 3.767 17 F -0.168 7.168 18 F -0.176 7.176 19 C -0.189 4.189 20 C 0.006 3.994 21 C -0.233 4.233 22 C 0.013 3.987 23 O -0.380 6.380 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.052 0.948 30 H 0.025 0.975 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.143 0.857 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -10.398 3.660 -16.530 19.869 hybrid contribution 0.815 0.919 -0.498 1.325 sum -9.583 4.579 -17.028 20.069 Atomic orbital electron populations 1.22106 0.94767 1.02318 1.01497 1.22162 0.95162 0.96986 0.90174 0.92676 1.21593 0.98414 1.00141 0.93650 1.20215 0.92663 0.96031 0.98494 1.21120 0.97272 1.33135 1.04055 0.91064 1.25019 0.98148 0.95413 0.94810 1.69912 1.17936 1.45468 1.20884 0.86860 0.80675 0.80666 0.81560 1.20410 1.21282 1.18956 1.64780 1.09460 1.46106 1.01463 1.24699 0.89756 1.05486 0.92072 1.22040 0.78969 0.78206 0.97470 1.93006 1.94860 1.35543 1.93400 1.93000 1.38880 1.90482 1.95229 1.23431 0.95028 1.00822 0.99651 1.21596 0.93978 0.93261 0.90611 1.22531 1.02797 0.95232 1.02762 1.22199 0.95887 0.95938 0.84632 1.86394 1.47044 1.68919 1.35617 0.91858 0.92634 0.91720 0.91698 0.91634 0.94848 0.97507 0.92749 0.89662 0.85679 0.88143 0.88441 0.91268 0.90606 0.92293 0.92573 0.92386 0.77368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 7.76 37.16 0.29 -1.51 16 2 C 0.06 0.94 1.66 -67.71 -0.11 0.82 16 3 H 0.06 0.84 5.63 -51.93 -0.29 0.55 16 4 C -0.10 -1.87 4.48 -26.73 -0.12 -1.99 16 5 C -0.04 -0.84 2.96 -27.88 -0.08 -0.93 16 6 C -0.52 -14.49 9.66 -34.43 -0.33 -14.82 16 7 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 8 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 9 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 10 Si 0.87 21.67 27.47 -169.99 -4.67 17.00 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 14 N -0.49 -7.24 4.76 -207.04 -0.99 -8.23 16 15 C 0.01 0.13 3.91 -1.81 -0.01 0.13 16 16 C 0.27 4.21 2.68 -24.78 -0.07 4.14 16 17 F -0.19 -3.09 17.20 2.25 0.04 -3.05 16 18 F -0.19 -3.27 17.20 2.25 0.04 -3.23 16 19 C -0.15 -1.95 5.54 -25.37 -0.14 -2.09 16 20 C 0.10 1.19 0.54 -130.53 -0.07 1.12 16 21 C -0.18 -2.06 6.75 37.16 0.25 -1.80 16 22 C 0.09 0.96 5.79 37.16 0.21 1.18 16 23 O -0.57 -5.39 12.50 -35.23 -0.44 -5.83 16 24 H 0.06 0.73 8.01 -51.93 -0.42 0.32 16 25 H 0.05 0.58 4.20 -51.93 -0.22 0.36 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 1.22 7.92 -51.93 -0.41 0.81 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.03 0.75 2.86 -51.93 -0.15 0.60 16 30 H 0.01 0.15 7.46 -51.93 -0.39 -0.23 16 31 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.09 1.50 6.69 -51.93 -0.35 1.15 16 33 H 0.13 2.33 6.57 -51.93 -0.34 1.98 16 34 H 0.10 1.24 7.33 -51.93 -0.38 0.86 16 35 H 0.10 1.18 7.66 -51.93 -0.40 0.78 16 36 H 0.07 0.76 7.85 -51.93 -0.41 0.36 16 37 H 0.08 0.85 4.64 -51.93 -0.24 0.61 16 38 H 0.06 0.74 7.67 -51.93 -0.40 0.34 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.56 5.42 -51.93 -0.28 0.28 16 41 H 0.38 1.86 9.12 45.56 0.42 2.28 16 LS Contribution 310.78 15.07 4.68 4.68 Total: -1.00 -31.20 310.78 -5.94 -37.14 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -5.11 Total: 2.49 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -0.28 Total: -13.90 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: -0.21 Total: -35.29 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.44 Total: -5.83 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 0.08 Total: -6.28 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.20 -5.94 -37.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492019.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.009 kcal (2) G-P(sol) polarization free energy of solvation -31.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds