Wall clock time and date at job start Mon Mar 30 2020 02:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46840 * 2 1 4 4 C 1.53000 * 109.47091 * 119.99570 * 2 1 3 5 5 C 1.52996 * 109.46918 * 197.57957 * 4 2 1 6 6 C 1.50711 * 109.46841 * 174.12396 * 5 4 2 7 7 H 1.07994 * 119.99855 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99648 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99422 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 120.00185 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.47161 * 90.00191 * 10 8 6 12 12 H 1.48497 * 109.46907 * 209.99714 * 10 8 6 13 13 H 1.48500 * 109.47179 * 330.00120 * 10 8 6 14 14 N 1.46896 * 109.47304 * 240.00045 * 2 1 3 15 15 C 1.48529 * 110.99816 * 184.97947 * 14 2 1 16 16 C 1.55104 * 103.28728 * 200.33103 * 15 14 2 17 17 F 1.39906 * 110.70768 * 278.99593 * 16 15 14 18 18 F 1.39896 * 110.81821 * 155.65870 * 16 15 14 19 19 C 1.54597 * 102.84395 * 37.30058 * 16 15 14 20 20 C 1.47896 * 111.00351 * 67.58145 * 14 2 1 21 21 C 1.52998 * 109.92023 * 26.48830 * 20 14 2 22 22 C 1.53002 * 109.91561 * 265.19658 * 20 14 2 23 23 O 1.42893 * 109.47253 * 185.92566 * 22 20 14 24 24 H 1.09001 * 109.47296 * 293.28432 * 1 2 3 25 25 H 1.08995 * 109.47006 * 53.28871 * 1 2 3 26 26 H 1.09000 * 109.46678 * 173.28771 * 1 2 3 27 27 H 1.09007 * 109.46812 * 317.57651 * 4 2 1 28 28 H 1.08993 * 109.47303 * 77.57428 * 4 2 1 29 29 H 1.09000 * 109.46973 * 294.11873 * 5 4 2 30 30 H 1.09002 * 109.47531 * 54.12640 * 5 4 2 31 31 H 0.97006 * 119.99588 * 180.02562 * 9 8 6 32 32 H 1.09004 * 110.66839 * 318.70872 * 15 14 2 33 33 H 1.09006 * 110.67228 * 81.84175 * 15 14 2 34 34 H 1.08996 * 110.31095 * 219.19223 * 19 16 15 35 35 H 1.09001 * 110.30712 * 97.11662 * 19 16 15 36 36 H 1.08990 * 109.47354 * 179.04737 * 21 20 14 37 37 H 1.09000 * 109.46899 * 299.05063 * 21 20 14 38 38 H 1.09001 * 109.46943 * 59.04415 * 21 20 14 39 39 H 1.09006 * 109.47365 * 305.92950 * 22 20 14 40 40 H 1.09004 * 109.47032 * 65.92666 * 22 20 14 41 41 H 0.96706 * 114.00096 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5065 -0.3550 1.4865 6 6 3.9673 -0.9483 2.7931 7 1 3.2828 -1.5287 3.3938 8 6 5.2631 -0.7508 3.2208 9 7 5.6650 -1.2681 4.3612 10 14 6.4476 0.2513 2.1807 11 1 6.3636 1.6810 2.5734 12 1 7.8324 -0.2403 2.3952 13 1 6.0886 0.1099 0.7467 14 7 2.0198 -0.6925 -1.1994 15 6 3.4996 -0.8173 -1.1750 16 6 3.8618 -1.0562 -2.6641 17 9 3.6686 -2.3977 -3.0111 18 9 5.1780 -0.6606 -2.9253 19 6 2.8589 -0.1479 -3.4117 20 6 1.7000 0.0752 -2.4224 21 6 1.5799 1.5632 -2.0873 22 6 0.3910 -0.4334 -3.0297 23 8 0.1619 0.2175 -4.2810 24 1 -0.3634 0.4062 0.9440 25 1 -0.3633 0.6143 -0.8238 26 1 -0.3633 -1.0206 -0.1201 27 1 1.4459 -0.4184 2.1116 28 1 1.9527 -1.7984 1.1081 29 1 4.1156 -0.7498 0.6734 30 1 3.6088 0.7295 1.5238 31 1 6.5766 -1.1289 4.6624 32 1 3.9574 0.1029 -0.8120 33 1 3.8040 -1.6669 -0.5636 34 1 2.4973 -0.6443 -4.3122 35 1 3.3269 0.8029 -3.6666 36 1 1.3611 2.1238 -2.9960 37 1 0.7748 1.7097 -1.3673 38 1 2.5183 1.9163 -1.6597 39 1 0.4576 -1.5100 -3.1870 40 1 -0.4333 -0.2157 -2.3506 41 1 -0.6526 -0.0574 -4.7240 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172492019.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:08 Heat of formation + Delta-G solvation = -155.299426 kcal Electronic energy + Delta-G solvation = -23899.285650 eV Core-core repulsion = 20256.536584 eV Total energy + Delta-G solvation = -3642.749065 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.159 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.95130 -48.13042 -41.36213 -37.69074 -36.06984 -34.65470 -33.08125 -31.60103 -29.67380 -27.77942 -27.14959 -26.38278 -23.27609 -22.34300 -21.86390 -20.03133 -18.85770 -18.68766 -18.53008 -17.80330 -16.93820 -16.74976 -16.29389 -15.99581 -15.74211 -15.47738 -15.07973 -14.80580 -14.54117 -14.45907 -14.33177 -14.05456 -13.90373 -13.60804 -13.36914 -13.34020 -13.01498 -12.85710 -12.76842 -12.53086 -12.19466 -12.07569 -11.98782 -11.77715 -11.62190 -11.45380 -11.20491 -11.00776 -10.69805 -10.67426 -9.56464 -8.30572 -6.32435 1.30518 1.33971 1.43274 2.30546 2.32545 2.66272 2.80482 3.05435 3.13487 3.47199 3.63592 3.80835 3.97072 4.03365 4.10127 4.21616 4.32935 4.43582 4.50111 4.59042 4.62582 4.67499 4.68181 4.75473 4.77836 4.89344 4.90519 5.01004 5.05154 5.18307 5.20973 5.42275 5.48427 5.56361 5.66348 5.75610 6.01660 6.29023 6.75405 6.96678 7.30962 8.86645 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.019809 B = 0.006609 C = 0.005577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.174409 B = 4235.883305 C = 5019.161336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.070 3.930 3 H 0.059 0.941 4 C -0.093 4.093 5 C -0.034 4.034 6 C -0.526 4.526 7 H 0.030 0.970 8 C 0.006 3.994 9 N -0.952 5.952 10 Si 0.940 3.060 11 H -0.266 1.266 12 H -0.286 1.286 13 H -0.245 1.245 14 N -0.494 5.494 15 C 0.004 3.996 16 C 0.266 3.734 17 F -0.195 7.195 18 F -0.203 7.203 19 C -0.142 4.142 20 C 0.091 3.909 21 C -0.172 4.172 22 C 0.099 3.901 23 O -0.582 6.582 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.042 0.958 30 H 0.012 0.988 31 H 0.265 0.735 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.048 0.952 39 H 0.051 0.949 40 H 0.070 0.930 41 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.104 5.609 -19.397 23.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.038 4.038 3 H 0.076 0.924 4 C -0.131 4.131 5 C -0.070 4.070 6 C -0.564 4.564 7 H 0.049 0.951 8 C -0.191 4.191 9 N -0.594 5.594 10 Si 0.764 3.236 11 H -0.191 1.191 12 H -0.212 1.212 13 H -0.169 1.169 14 N -0.220 5.220 15 C -0.124 4.124 16 C 0.230 3.770 17 F -0.176 7.176 18 F -0.184 7.184 19 C -0.180 4.180 20 C 0.002 3.998 21 C -0.230 4.230 22 C 0.021 3.979 23 O -0.390 6.390 24 H 0.087 0.913 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.030 0.970 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.116 0.884 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -11.660 5.350 -19.155 23.054 hybrid contribution 1.145 0.317 0.348 1.238 sum -10.515 5.667 -18.807 22.280 Atomic orbital electron populations 1.22063 0.92071 1.03055 1.02852 1.22053 0.97173 0.96217 0.88358 0.92362 1.21447 0.95967 0.99846 0.95848 1.20199 0.95379 0.95747 0.95708 1.21523 0.96776 1.32354 1.05723 0.95116 1.25948 1.00255 0.96799 0.96055 1.70069 1.18609 1.47596 1.23084 0.85806 0.77854 0.79259 0.80682 1.19112 1.21241 1.16887 1.64775 1.07884 1.46955 1.02353 1.24499 0.91339 1.03903 0.92673 1.22209 0.79218 0.78371 0.97251 1.92988 1.94884 1.36324 1.93381 1.92980 1.39686 1.90517 1.95228 1.23446 0.94253 1.00620 0.99685 1.21746 0.94958 0.93739 0.89358 1.22509 1.02614 0.94415 1.03461 1.22020 0.94909 0.95528 0.85438 1.86341 1.48731 1.68867 1.35106 0.91286 0.90285 0.91571 0.92178 0.92940 0.94053 0.96963 0.92639 0.90506 0.88363 0.87219 0.87328 0.90112 0.89834 0.93245 0.93115 0.91171 0.74940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 7.76 71.98 0.56 -2.46 16 2 C 0.07 1.95 1.66 44.92 0.07 2.02 16 3 H 0.06 1.63 5.63 -2.39 -0.01 1.61 16 4 C -0.09 -3.47 4.48 30.59 0.14 -3.33 16 5 C -0.03 -1.52 2.96 29.85 0.09 -1.43 16 6 C -0.53 -30.32 9.66 25.60 0.25 -30.07 16 7 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 8 C 0.01 0.35 5.47 84.66 0.46 0.81 16 9 N -0.95 -60.59 13.96 21.45 0.30 -60.29 16 10 Si 0.94 44.79 27.47 68.60 1.88 46.68 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 12 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 13 H -0.25 -10.80 6.54 99.48 0.65 -10.15 16 14 N -0.49 -13.64 4.76 -808.94 -3.85 -17.49 16 15 C 0.00 0.15 3.91 86.71 0.34 0.48 16 16 C 0.27 7.94 2.68 31.86 0.09 8.03 16 17 F -0.19 -6.25 17.20 44.97 0.77 -5.48 16 18 F -0.20 -6.54 17.20 44.97 0.77 -5.77 16 19 C -0.14 -3.29 5.54 31.47 0.17 -3.12 16 20 C 0.09 2.01 0.54 3.67 0.00 2.01 16 21 C -0.17 -3.43 6.75 71.98 0.49 -2.94 16 22 C 0.10 1.73 5.79 71.98 0.42 2.15 16 23 O -0.58 -8.55 12.50 -148.98 -1.86 -10.42 16 24 H 0.07 1.40 8.01 -2.39 -0.02 1.38 16 25 H 0.08 1.31 4.20 -2.39 -0.01 1.30 16 26 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.06 2.26 7.92 -2.38 -0.02 2.24 16 28 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.04 1.85 2.86 -2.39 -0.01 1.84 16 30 H 0.01 0.54 7.46 -2.39 -0.02 0.52 16 31 H 0.26 15.76 8.31 -92.70 -0.77 14.99 16 32 H 0.08 2.61 6.69 -2.39 -0.02 2.59 16 33 H 0.10 3.70 6.57 -2.38 -0.02 3.68 16 34 H 0.11 2.37 7.33 -2.39 -0.02 2.35 16 35 H 0.11 2.29 7.66 -2.39 -0.02 2.27 16 36 H 0.08 1.45 7.85 -2.39 -0.02 1.43 16 37 H 0.08 1.53 4.64 -2.39 -0.01 1.52 16 38 H 0.05 1.08 7.67 -2.39 -0.02 1.07 16 39 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.07 1.06 5.42 -2.39 -0.01 1.05 16 41 H 0.40 2.29 9.12 -74.05 -0.68 1.61 16 Total: -1.00 -68.68 310.78 1.41 -67.27 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.32 Total: 13.33 kcal Atomic # 6 Polarization: -30.92 SS G_CDS: 3.07 Total: -27.84 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -3.55 Total: -77.77 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -1.86 Total: -10.42 kcal Atomic # 9 Polarization: -12.79 SS G_CDS: 1.55 Total: -11.24 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.88 Total: 46.68 kcal Total: -68.68 1.41 -67.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492019.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.031 kcal (2) G-P(sol) polarization free energy of solvation -68.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds