Wall clock time and date at job start Mon Mar 30 2020 02:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.47086 * 2 1 4 4 C 1.52998 * 109.47085 * 240.00167 * 2 1 3 5 5 C 1.53004 * 109.47160 * 175.45430 * 4 2 1 6 6 C 1.50692 * 109.47111 * 186.48355 * 5 4 2 7 7 H 1.08003 * 120.00384 * 0.02562 * 6 5 4 8 8 C 1.37886 * 119.99894 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99942 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99826 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47216 * 60.00064 * 10 8 6 12 12 H 1.48501 * 109.47049 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47067 * 300.00020 * 10 8 6 14 14 N 1.46901 * 109.47231 * 120.00088 * 2 1 3 15 15 C 1.46848 * 110.99990 * 83.16866 * 14 2 1 16 16 C 1.53034 * 109.51955 * 185.83818 * 15 14 2 17 17 F 1.39895 * 109.50530 * 60.76472 * 16 15 14 18 18 F 1.39903 * 109.49985 * 180.87764 * 16 15 14 19 19 C 1.53121 * 109.28125 * 300.81841 * 16 15 14 20 20 C 1.53117 * 109.15822 * 57.66123 * 19 16 15 21 21 C 1.46852 * 110.99744 * 207.37875 * 14 2 1 22 22 H 1.08994 * 109.46179 * 294.17607 * 21 14 2 23 23 C 1.52996 * 109.46426 * 54.14816 * 21 14 2 24 24 O 1.42895 * 109.47445 * 61.36638 * 23 21 14 25 25 H 1.08997 * 109.46827 * 294.99427 * 1 2 3 26 26 H 1.08994 * 109.47326 * 54.99373 * 1 2 3 27 27 H 1.08998 * 109.46842 * 175.00064 * 1 2 3 28 28 H 1.08993 * 109.47065 * 295.45358 * 4 2 1 29 29 H 1.08998 * 109.46865 * 55.45769 * 4 2 1 30 30 H 1.09001 * 109.47274 * 306.49102 * 5 4 2 31 31 H 1.09002 * 109.46922 * 66.48626 * 5 4 2 32 32 H 0.96998 * 119.99917 * 179.97438 * 9 8 6 33 33 H 1.08993 * 109.46274 * 305.85416 * 15 14 2 34 34 H 1.09000 * 109.45877 * 65.83575 * 15 14 2 35 35 H 1.09000 * 109.52095 * 177.55847 * 19 16 15 36 36 H 1.08993 * 109.52296 * 297.69101 * 19 16 15 37 37 H 1.08997 * 109.50716 * 62.28073 * 20 19 16 38 38 H 1.08999 * 109.50306 * 182.40966 * 20 19 16 39 39 H 1.08998 * 109.47130 * 181.37163 * 23 21 14 40 40 H 1.09005 * 109.46807 * 301.36998 * 23 21 14 41 41 H 0.96703 * 114.00395 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5658 -0.6230 -1.3077 6 6 4.0561 -1.1922 -2.6140 7 1 3.3501 -1.5844 -3.3311 8 6 5.4061 -1.2123 -2.8939 9 7 6.2657 -0.7342 -2.0210 10 14 6.0138 -1.9172 -4.5135 11 1 5.4253 -1.1487 -5.6397 12 1 7.4947 -1.8231 -4.5697 13 1 5.6044 -3.3408 -4.6184 14 7 2.0197 -0.6925 1.1994 15 6 2.0414 -2.1466 0.9956 16 6 2.4158 -2.8412 2.3067 17 9 1.4632 -2.5372 3.2850 18 9 2.4559 -4.2254 2.1071 19 6 3.7924 -2.3506 2.7637 20 6 3.7562 -0.8280 2.9220 21 6 3.3429 -0.1916 1.5929 22 1 4.0719 -0.4493 0.8246 23 6 3.2859 1.3290 1.7518 24 8 2.3531 1.6658 2.7806 25 1 -0.3633 0.4342 0.9314 26 1 -0.3634 0.5895 -0.8417 27 1 -0.3633 -1.0238 -0.0896 28 1 1.7447 -1.7696 -1.2095 29 1 1.6117 -0.2565 -2.1373 30 1 3.8658 0.4222 -1.2313 31 1 3.9981 -1.1864 -0.4808 32 1 7.2155 -0.7487 -2.2177 33 1 1.0556 -2.4831 0.6749 34 1 2.7767 -2.3950 0.2302 35 1 4.0441 -2.8102 3.7195 36 1 4.5414 -2.6227 2.0201 37 1 3.0350 -0.5594 3.6938 38 1 4.7451 -0.4680 3.2058 39 1 4.2737 1.7036 2.0200 40 1 2.9689 1.7808 0.8118 41 1 2.2656 2.6161 2.9365 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172493654.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:14 Heat of formation + Delta-G solvation = -169.599185 kcal Electronic energy + Delta-G solvation = -24067.165679 eV Core-core repulsion = 20423.796530 eV Total energy + Delta-G solvation = -3643.369149 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.159 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.91699 -47.91087 -40.95064 -37.36726 -36.09487 -34.94735 -32.05048 -31.94826 -30.94566 -27.03525 -26.93793 -25.58149 -23.56708 -22.53689 -21.25672 -20.56649 -18.61262 -18.54422 -18.24421 -17.59139 -17.31283 -16.61603 -16.41330 -16.14138 -15.71515 -14.95315 -14.82841 -14.62782 -14.52423 -14.30467 -14.20767 -13.91660 -13.82627 -13.53279 -13.24679 -13.11004 -13.06991 -12.94544 -12.72098 -12.57651 -12.38378 -12.13325 -11.89362 -11.73642 -11.38097 -11.25344 -11.19094 -11.01093 -10.61204 -10.49113 -9.10590 -8.19866 -6.29078 1.38349 1.38962 1.46745 2.39011 2.56401 2.92185 3.12046 3.14202 3.39442 3.49094 3.64405 3.86517 4.03732 4.13242 4.32133 4.33802 4.38759 4.47030 4.55845 4.62876 4.63438 4.69470 4.77444 4.84517 4.86445 4.94994 4.99944 5.04851 5.15107 5.24583 5.33935 5.46993 5.51909 5.73632 5.84561 6.05300 6.17786 6.28224 6.85221 7.05717 7.39034 8.89412 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.016641 B = 0.006529 C = 0.005982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.165328 B = 4287.286704 C = 4679.604621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.076 3.924 3 H 0.085 0.915 4 C -0.136 4.136 5 C 0.028 3.972 6 C -0.546 4.546 7 H 0.050 0.950 8 C 0.010 3.990 9 N -0.922 5.922 10 Si 0.951 3.049 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.272 1.272 14 N -0.498 5.498 15 C 0.013 3.987 16 C 0.292 3.708 17 F -0.197 7.197 18 F -0.210 7.210 19 C -0.158 4.158 20 C -0.095 4.095 21 C 0.052 3.948 22 H 0.065 0.935 23 C 0.091 3.909 24 O -0.566 6.566 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.054 0.946 30 H -0.007 1.007 31 H 0.015 0.985 32 H 0.263 0.737 33 H 0.095 0.905 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.059 0.941 40 H 0.046 0.954 41 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.675 2.528 9.505 11.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.032 4.032 3 H 0.103 0.897 4 C -0.175 4.175 5 C -0.008 4.008 6 C -0.584 4.584 7 H 0.069 0.931 8 C -0.188 4.188 9 N -0.562 5.562 10 Si 0.776 3.224 11 H -0.196 1.196 12 H -0.208 1.208 13 H -0.198 1.198 14 N -0.222 5.222 15 C -0.116 4.116 16 C 0.255 3.745 17 F -0.178 7.178 18 F -0.191 7.191 19 C -0.196 4.196 20 C -0.133 4.133 21 C -0.056 4.056 22 H 0.083 0.917 23 C 0.013 3.987 24 O -0.372 6.372 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.011 0.989 31 H 0.033 0.967 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.081 0.919 35 H 0.122 0.878 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -6.908 1.993 9.965 12.288 hybrid contribution 1.194 -0.197 -1.728 2.109 sum -5.714 1.796 8.237 10.184 Atomic orbital electron populations 1.21674 0.93068 1.01624 1.02066 1.21973 0.96473 0.98066 0.86690 0.89746 1.22282 0.97393 0.99902 0.97943 1.19228 0.91242 0.94981 0.95355 1.21663 0.92298 1.40305 1.04123 0.93135 1.25763 0.97293 0.95741 1.00052 1.70024 1.02384 1.47044 1.36699 0.85718 0.77159 0.79104 0.80379 1.19571 1.20772 1.19764 1.62223 1.24936 1.01076 1.34004 1.23006 1.03658 0.90961 0.93970 1.21121 0.89615 0.75821 0.87916 1.92969 1.67135 1.92821 1.64889 1.92967 1.97154 1.33366 1.95653 1.22586 0.93478 0.99018 1.04508 1.21424 1.02912 0.91704 0.97247 1.22304 0.90838 0.94777 0.97644 0.91709 1.22127 0.92483 0.93463 0.90631 1.86559 1.64020 1.29874 1.56758 0.91738 0.91451 0.93331 0.92949 0.92747 0.98898 0.96722 0.92836 0.88689 0.91885 0.87776 0.89628 0.89981 0.89117 0.92321 0.93582 0.76329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.47 9.35 71.98 0.67 -2.79 16 2 C 0.08 2.47 2.36 44.92 0.11 2.57 16 3 H 0.08 2.78 5.09 -2.38 -0.01 2.76 16 4 C -0.14 -5.32 4.10 30.60 0.13 -5.20 16 5 C 0.03 1.37 3.33 29.85 0.10 1.47 16 6 C -0.55 -29.83 9.11 25.60 0.23 -29.60 16 7 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 8 C 0.01 0.57 5.46 84.66 0.46 1.03 16 9 N -0.92 -52.81 13.29 21.45 0.28 -52.52 16 10 Si 0.95 43.27 29.54 68.60 2.03 45.30 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 13 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 14 N -0.50 -16.35 4.15 -846.02 -3.51 -19.86 16 15 C 0.01 0.45 3.48 86.32 0.30 0.75 16 16 C 0.29 9.44 2.14 30.65 0.07 9.51 16 17 F -0.20 -6.59 16.60 44.97 0.75 -5.85 16 18 F -0.21 -7.10 17.07 44.97 0.77 -6.33 16 19 C -0.16 -4.59 5.53 30.67 0.17 -4.42 16 20 C -0.10 -2.72 5.10 30.65 0.16 -2.57 16 21 C 0.05 1.71 1.82 44.94 0.08 1.79 16 22 H 0.07 2.60 4.52 -2.39 -0.01 2.59 16 23 C 0.09 2.55 6.29 71.98 0.45 3.00 16 24 O -0.57 -14.17 12.81 -148.98 -1.91 -16.08 16 25 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.05 1.32 7.39 -2.39 -0.02 1.30 16 28 H 0.05 2.05 6.12 -2.39 -0.01 2.03 16 29 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 30 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 31 H 0.01 0.75 4.16 -2.39 -0.01 0.74 16 32 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 33 H 0.09 3.10 7.07 -2.39 -0.02 3.08 16 34 H 0.06 2.47 5.10 -2.39 -0.01 2.46 16 35 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.09 2.65 8.14 -2.39 -0.02 2.64 16 37 H 0.08 2.42 7.39 -2.39 -0.02 2.40 16 38 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.05 1.35 5.75 -2.38 -0.01 1.34 16 41 H 0.39 5.96 9.12 -74.06 -0.68 5.29 16 Total: -1.00 -61.82 315.72 1.70 -60.11 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.37 Total: 19.66 kcal Atomic # 6 Polarization: -27.37 SS G_CDS: 2.93 Total: -24.44 kcal Atomic # 7 Polarization: -69.15 SS G_CDS: -3.23 Total: -72.38 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -1.91 Total: -16.08 kcal Atomic # 9 Polarization: -13.69 SS G_CDS: 1.51 Total: -12.18 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -61.82 1.70 -60.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172493654.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.485 kcal (2) G-P(sol) polarization free energy of solvation -61.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds