Wall clock time and date at job start Mon Mar 30 2020 02:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47341 * 2 1 4 4 C 1.52997 * 109.47486 * 239.99821 * 2 1 3 5 5 C 1.52997 * 109.47534 * 177.94408 * 4 2 1 6 6 C 1.50701 * 109.47360 * 175.27759 * 5 4 2 7 7 H 1.07996 * 119.99707 * 359.72742 * 6 5 4 8 8 C 1.37869 * 119.99955 * 179.97438 * 6 5 4 9 9 N 1.31521 * 120.00429 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99993 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47043 * 90.00220 * 10 8 6 12 12 H 1.48497 * 109.47095 * 210.00509 * 10 8 6 13 13 H 1.48500 * 109.47201 * 330.00509 * 10 8 6 14 14 N 1.46904 * 109.46945 * 119.99671 * 2 1 3 15 15 C 1.46853 * 110.99658 * 62.57850 * 14 2 1 16 16 C 1.53040 * 109.51945 * 174.15878 * 15 14 2 17 17 F 1.39903 * 109.50052 * 179.11683 * 16 15 14 18 18 F 1.39900 * 109.50286 * 299.23372 * 16 15 14 19 19 C 1.53119 * 109.28097 * 59.17723 * 16 15 14 20 20 C 1.53121 * 109.15974 * 302.34426 * 19 16 15 21 21 C 1.46844 * 111.00150 * 298.36476 * 14 2 1 22 22 H 1.08997 * 109.45974 * 65.82651 * 21 14 2 23 23 C 1.52994 * 109.46265 * 305.85625 * 21 14 2 24 24 O 1.42902 * 109.46901 * 297.24063 * 23 21 14 25 25 H 1.08999 * 109.47079 * 56.40678 * 1 2 3 26 26 H 1.08999 * 109.46945 * 176.40341 * 1 2 3 27 27 H 1.08997 * 109.46942 * 296.40250 * 1 2 3 28 28 H 1.08997 * 109.46926 * 57.94588 * 4 2 1 29 29 H 1.08997 * 109.47092 * 297.94810 * 4 2 1 30 30 H 1.09003 * 109.46777 * 55.27797 * 5 4 2 31 31 H 1.09000 * 109.47014 * 295.28431 * 5 4 2 32 32 H 0.96999 * 119.99837 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.45716 * 294.17173 * 15 14 2 34 34 H 1.08995 * 109.46281 * 54.14210 * 15 14 2 35 35 H 1.09005 * 109.51883 * 62.24727 * 19 16 15 36 36 H 1.08996 * 109.52321 * 182.43755 * 19 16 15 37 37 H 1.09003 * 109.50083 * 177.59100 * 20 19 16 38 38 H 1.08993 * 109.50137 * 297.67238 * 20 19 16 39 39 H 1.08992 * 109.47662 * 57.24356 * 23 21 14 40 40 H 1.09007 * 109.47162 * 177.24297 * 23 21 14 41 41 H 0.96705 * 113.99754 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5692 -0.6766 -1.2753 6 6 4.0755 -1.4851 -2.4419 7 1 3.3767 -1.9848 -3.0964 8 6 5.4309 -1.5910 -2.6707 9 7 6.2822 -0.9869 -1.8705 10 14 6.0586 -2.5927 -4.1172 11 1 6.1773 -1.7174 -5.3110 12 1 7.3899 -3.1607 -3.7855 13 1 5.1074 -3.6961 -4.4051 14 7 2.0196 -0.6925 1.1995 15 6 1.5997 -2.0997 1.2030 16 6 2.2461 -2.8233 2.3865 17 9 1.8299 -4.1589 2.4011 18 9 3.6386 -2.7685 2.2634 19 6 1.8209 -2.1410 3.6897 20 6 2.2269 -0.6654 3.6402 21 6 1.5810 -0.0043 2.4203 22 1 0.4962 -0.0692 2.5039 23 6 2.0001 1.4657 2.3555 24 8 3.4257 1.5529 2.3100 25 1 -0.3633 0.5686 -0.8560 26 1 -0.3633 -1.0256 -0.0645 27 1 -0.3633 0.4570 0.9205 28 1 1.6470 -0.2292 -2.1388 29 1 1.7071 -1.7590 -1.2309 30 1 3.9607 -1.0933 -0.3473 31 1 3.9008 0.3566 -1.3780 32 1 7.2358 -1.0618 -2.0314 33 1 0.5148 -2.1546 1.2923 34 1 1.9119 -2.5741 0.2727 35 1 0.7396 -2.2177 3.8049 36 1 2.3133 -2.6262 4.5324 37 1 1.8888 -0.1644 4.5472 38 1 3.3115 -0.5888 3.5647 39 1 1.5793 1.9244 1.4609 40 1 1.6321 1.9877 3.2389 41 1 3.7632 2.4581 2.2674 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172493655.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:18 Heat of formation + Delta-G solvation = -152.873011 kcal Electronic energy + Delta-G solvation = -23892.739327 eV Core-core repulsion = 20250.095479 eV Total energy + Delta-G solvation = -3642.643848 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.159 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.51572 -46.48158 -39.58819 -36.21443 -34.89799 -32.84566 -30.92544 -30.55629 -28.93769 -26.05039 -25.06025 -24.35242 -21.85547 -21.16324 -20.07500 -18.89218 -17.41780 -17.17388 -16.34484 -16.13923 -16.00885 -15.24200 -14.90169 -14.36954 -14.29471 -13.86552 -13.56393 -13.26364 -13.14386 -13.00238 -12.88895 -12.59795 -12.57374 -12.05842 -11.96398 -11.76069 -11.52783 -11.39394 -11.19640 -10.87324 -10.81230 -10.64059 -10.39987 -10.22951 -9.95443 -9.71321 -9.50682 -9.16658 -8.81834 -8.16690 -7.84183 -5.80380 -3.82314 3.41426 3.47744 3.50865 3.77267 4.10775 4.35424 4.40462 4.59693 4.62085 4.66126 4.99109 5.13356 5.25827 5.29797 5.38618 5.44585 5.48708 5.52933 5.54456 5.63088 5.67721 5.75520 5.79564 5.87361 5.99238 6.14468 6.19167 6.28256 6.46254 6.63973 6.82447 7.27323 7.34905 7.47541 7.91286 7.92245 8.14047 8.33859 8.63036 9.27050 9.79872 11.30072 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.016849 B = 0.006395 C = 0.005746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.459755 B = 4377.306120 C = 4872.049518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.081 3.919 3 H 0.087 0.913 4 C -0.107 4.107 5 C 0.030 3.970 6 C -0.522 4.522 7 H 0.049 0.951 8 C 0.058 3.942 9 N -0.889 5.889 10 Si 0.884 3.116 11 H -0.283 1.283 12 H -0.287 1.287 13 H -0.276 1.276 14 N -0.493 5.493 15 C 0.014 3.986 16 C 0.293 3.707 17 F -0.208 7.208 18 F -0.179 7.179 19 C -0.159 4.159 20 C -0.107 4.107 21 C 0.078 3.922 22 H 0.052 0.948 23 C 0.084 3.916 24 O -0.544 6.544 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.039 0.961 31 H 0.009 0.991 32 H 0.257 0.743 33 H 0.054 0.946 34 H 0.113 0.887 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.049 0.951 40 H 0.042 0.958 41 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.978 3.833 12.282 18.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.026 4.026 3 H 0.105 0.895 4 C -0.144 4.144 5 C -0.007 4.007 6 C -0.560 4.560 7 H 0.067 0.933 8 C -0.143 4.143 9 N -0.528 5.528 10 Si 0.713 3.287 11 H -0.209 1.209 12 H -0.213 1.213 13 H -0.201 1.201 14 N -0.217 5.217 15 C -0.115 4.115 16 C 0.256 3.744 17 F -0.189 7.189 18 F -0.160 7.160 19 C -0.197 4.197 20 C -0.145 4.145 21 C -0.030 4.030 22 H 0.069 0.931 23 C 0.005 3.995 24 O -0.348 6.348 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.028 0.972 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.131 0.869 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.113 0.887 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -12.297 3.181 12.326 17.699 hybrid contribution -0.426 -0.146 -0.867 0.977 sum -12.723 3.035 11.459 17.389 Atomic orbital electron populations 1.22567 0.98927 1.01887 1.01464 1.21950 0.90779 0.99263 0.90605 0.89457 1.21811 1.01449 0.98042 0.93135 1.19003 0.87381 0.96747 0.97579 1.21312 0.91530 1.31021 1.12163 0.93295 1.24981 0.97183 0.95877 0.96213 1.69994 1.01862 1.43614 1.37306 0.86727 0.78270 0.80558 0.83185 1.20912 1.21333 1.20092 1.61883 1.59293 0.99420 1.01124 1.23024 0.97795 0.91488 0.99193 1.20951 0.77669 0.78062 0.97742 1.92973 1.90259 1.38013 1.97623 1.93088 1.29780 1.96088 1.97022 1.22582 1.02862 0.98000 0.96234 1.21512 1.04017 0.92285 0.96703 1.21816 0.96491 0.93378 0.91358 0.93062 1.22162 0.83137 0.95110 0.99086 1.86730 1.19159 1.31593 1.97285 0.91984 0.92676 0.93279 0.93180 0.93396 0.94307 0.97227 0.93291 0.92781 0.86892 0.89723 0.89626 0.90839 0.88658 0.93312 0.94028 0.78272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.43 8.51 37.16 0.32 -2.11 16 2 C 0.08 1.34 1.94 -67.71 -0.13 1.21 16 3 H 0.09 1.48 6.05 -51.93 -0.31 1.16 16 4 C -0.11 -2.19 4.29 -26.73 -0.11 -2.31 16 5 C 0.03 0.80 4.90 -27.88 -0.14 0.66 16 6 C -0.52 -15.31 9.11 -34.44 -0.31 -15.62 16 7 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -27.90 13.29 55.43 0.74 -27.16 16 10 Si 0.88 22.56 29.54 -169.99 -5.02 17.54 16 11 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 14 N -0.49 -8.17 3.60 -218.76 -0.79 -8.96 16 15 C 0.01 0.23 4.16 -3.83 -0.02 0.21 16 16 C 0.29 4.77 2.14 -26.65 -0.06 4.72 16 17 F -0.21 -3.43 17.07 2.25 0.04 -3.40 16 18 F -0.18 -3.68 16.60 2.25 0.04 -3.64 16 19 C -0.16 -1.96 5.53 -26.61 -0.15 -2.11 16 20 C -0.11 -1.35 5.08 -26.65 -0.14 -1.49 16 21 C 0.08 1.02 1.71 -67.72 -0.12 0.90 16 22 H 0.05 0.58 6.58 -51.93 -0.34 0.24 16 23 C 0.08 1.00 6.21 37.15 0.23 1.23 16 24 O -0.54 -7.95 12.77 -35.23 -0.45 -8.40 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.70 6.78 -51.93 -0.35 0.35 16 27 H 0.05 0.54 6.38 -51.93 -0.33 0.21 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.05 0.98 6.12 -51.93 -0.32 0.66 16 30 H 0.04 1.14 7.53 -51.93 -0.39 0.75 16 31 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 33 H 0.05 0.74 6.76 -51.93 -0.35 0.39 16 34 H 0.11 2.13 5.89 -51.93 -0.31 1.83 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 1.50 7.36 -51.93 -0.38 1.11 16 39 H 0.05 0.57 6.13 -51.93 -0.32 0.25 16 40 H 0.04 0.39 8.14 -51.92 -0.42 -0.04 16 41 H 0.37 3.79 9.12 45.56 0.42 4.21 16 LS Contribution 320.96 15.07 4.84 4.84 Total: -1.00 -34.00 320.96 -6.82 -40.82 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -5.49 Total: 1.41 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -0.72 Total: -13.05 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: -0.05 Total: -36.11 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: -0.45 Total: -8.40 kcal Atomic # 9 Polarization: -7.11 SS G_CDS: 0.08 Total: -7.04 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.00 -6.82 -40.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172493655.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.053 kcal (2) G-P(sol) polarization free energy of solvation -34.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds