Wall clock time and date at job start Mon Mar 30 2020 02:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47023 * 2 1 4 4 C 1.53004 * 109.46775 * 119.99599 * 2 1 3 5 5 C 1.52997 * 109.47363 * 183.33173 * 4 2 1 6 6 C 1.50701 * 109.47514 * 179.97438 * 5 4 2 7 7 H 1.07998 * 119.99700 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00104 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99743 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99879 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47295 * 59.99908 * 10 8 6 12 12 H 1.48501 * 109.46997 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47002 * 299.99756 * 10 8 6 14 14 N 1.46897 * 109.47286 * 239.99429 * 2 1 3 15 15 C 1.46849 * 111.00407 * 302.33868 * 14 2 1 16 16 C 1.53037 * 109.52333 * 185.83894 * 15 14 2 17 17 F 1.39897 * 109.50143 * 180.88299 * 16 15 14 18 18 F 1.39892 * 109.50240 * 60.76335 * 16 15 14 19 19 C 1.53121 * 109.27801 * 300.82322 * 16 15 14 20 20 C 1.53116 * 109.16232 * 57.65641 * 19 16 15 21 21 C 1.46846 * 110.99860 * 66.55309 * 14 2 1 22 22 H 1.08999 * 109.46255 * 294.17515 * 21 14 2 23 23 C 1.53000 * 109.46232 * 54.14018 * 21 14 2 24 24 O 1.42900 * 109.47088 * 65.05869 * 23 21 14 25 25 H 1.09006 * 109.46951 * 60.00706 * 1 2 3 26 26 H 1.08999 * 109.47023 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47803 * 300.00256 * 1 2 3 28 28 H 1.08994 * 109.47412 * 303.33739 * 4 2 1 29 29 H 1.09005 * 109.47249 * 63.33466 * 4 2 1 30 30 H 1.09004 * 109.47391 * 300.00411 * 5 4 2 31 31 H 1.09005 * 109.46698 * 59.99956 * 5 4 2 32 32 H 0.97002 * 119.99558 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.45868 * 65.82629 * 15 14 2 34 34 H 1.08993 * 109.45917 * 305.85920 * 15 14 2 35 35 H 1.08999 * 109.52236 * 177.56352 * 19 16 15 36 36 H 1.09001 * 109.52277 * 297.74688 * 19 16 15 37 37 H 1.08993 * 109.50340 * 62.28560 * 20 19 16 38 38 H 1.09003 * 109.50233 * 182.40419 * 20 19 16 39 39 H 1.09006 * 109.47173 * 185.05320 * 23 21 14 40 40 H 1.08998 * 109.47556 * 305.05526 * 23 21 14 41 41 H 0.96700 * 114.00080 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5676 -0.6491 1.2921 6 6 4.0698 -1.3589 2.5230 7 1 3.3694 -1.8161 3.2062 8 6 5.4234 -1.4245 2.7768 9 7 6.2763 -0.8682 1.9445 10 14 6.0460 -2.3050 4.3022 11 1 5.6191 -3.7267 4.2620 12 1 7.5287 -2.2338 4.3443 13 1 5.4850 -1.6537 5.5131 14 7 2.0197 -0.6926 -1.1993 15 6 1.5038 -2.0661 -1.2615 16 6 2.1469 -2.8011 -2.4397 17 9 1.6401 -4.1031 -2.5107 18 9 3.5335 -2.8479 -2.2602 19 6 1.8243 -2.0555 -3.7376 20 6 2.3292 -0.6142 -3.6280 21 6 1.6808 0.0575 -2.4154 22 1 0.5985 0.0717 -2.5436 23 6 2.1978 1.4921 -2.2902 24 8 3.6259 1.4810 -2.2397 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.6286 -0.2431 2.1383 29 1 1.7262 -1.7647 1.2200 30 1 3.9790 -1.1273 0.4031 31 1 3.8813 0.3944 1.3214 32 1 7.2286 -0.9141 2.1233 33 1 0.4222 -2.0420 -1.3952 34 1 1.7435 -2.5863 -0.3343 35 1 2.3164 -2.5512 -4.5744 36 1 0.7461 -2.0526 -3.8977 37 1 3.4124 -0.6163 -3.5069 38 1 2.0646 -0.0661 -4.5324 39 1 1.8692 2.0733 -3.1518 40 1 1.8055 1.9414 -1.3779 41 1 4.0235 2.3590 -2.1606 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172493657.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:24 Heat of formation + Delta-G solvation = -152.839141 kcal Electronic energy + Delta-G solvation = -23847.059907 eV Core-core repulsion = 20204.417528 eV Total energy + Delta-G solvation = -3642.642379 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.159 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.55347 -46.51870 -39.57620 -36.19747 -34.90007 -32.85210 -30.89863 -30.59726 -28.93251 -26.03867 -25.08875 -24.37321 -21.85102 -21.17634 -20.05484 -18.93096 -17.39788 -17.20458 -16.36695 -16.14056 -16.01366 -15.27260 -14.91817 -14.37499 -14.27447 -13.84756 -13.56446 -13.27656 -13.14545 -13.02073 -12.90867 -12.60601 -12.57650 -12.09399 -12.01344 -11.77589 -11.52762 -11.37705 -11.18959 -10.89816 -10.79397 -10.63955 -10.42260 -10.24459 -9.96679 -9.69451 -9.47219 -9.15677 -8.82835 -8.16395 -7.85480 -5.80134 -3.82072 3.42889 3.47223 3.49483 3.75043 4.08889 4.32259 4.41207 4.59757 4.60679 4.64661 4.98184 5.12480 5.24728 5.28259 5.39516 5.44539 5.47173 5.54460 5.54627 5.62590 5.68272 5.74123 5.78532 5.84186 5.98098 6.12424 6.18946 6.29841 6.47250 6.64360 6.82395 7.28581 7.33893 7.47024 7.91759 7.94360 8.14795 8.34331 8.63593 9.27178 9.79949 11.30272 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.016971 B = 0.006223 C = 0.005670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.469493 B = 4498.387360 C = 4937.235007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.080 3.920 3 H 0.088 0.912 4 C -0.105 4.105 5 C 0.033 3.967 6 C -0.523 4.523 7 H 0.048 0.952 8 C 0.059 3.941 9 N -0.889 5.889 10 Si 0.885 3.115 11 H -0.279 1.279 12 H -0.288 1.288 13 H -0.279 1.279 14 N -0.494 5.494 15 C 0.015 3.985 16 C 0.292 3.708 17 F -0.208 7.208 18 F -0.179 7.179 19 C -0.158 4.158 20 C -0.107 4.107 21 C 0.079 3.921 22 H 0.051 0.949 23 C 0.083 3.917 24 O -0.544 6.544 25 H 0.047 0.953 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.036 0.964 31 H 0.009 0.991 32 H 0.258 0.742 33 H 0.056 0.944 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.073 0.927 39 H 0.041 0.959 40 H 0.050 0.950 41 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.677 3.740 -12.512 18.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.028 4.028 3 H 0.106 0.894 4 C -0.142 4.142 5 C -0.004 4.004 6 C -0.561 4.561 7 H 0.067 0.933 8 C -0.142 4.142 9 N -0.528 5.528 10 Si 0.713 3.287 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.205 1.205 14 N -0.218 5.218 15 C -0.114 4.114 16 C 0.255 3.745 17 F -0.189 7.189 18 F -0.160 7.160 19 C -0.197 4.197 20 C -0.145 4.145 21 C -0.030 4.030 22 H 0.068 0.932 23 C 0.004 3.996 24 O -0.348 6.348 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.028 0.972 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.127 0.873 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.114 0.886 38 H 0.092 0.908 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -12.039 3.063 -12.561 17.666 hybrid contribution -0.408 -0.037 0.899 0.988 sum -12.447 3.026 -11.662 17.323 Atomic orbital electron populations 1.22561 0.98883 1.01803 1.01560 1.21998 0.90832 0.99276 0.90663 0.89369 1.21775 1.01410 0.98024 0.93016 1.18964 0.87454 0.96853 0.97147 1.21292 0.91634 1.35094 1.08104 0.93347 1.24980 0.97156 0.95789 0.96319 1.69986 1.01929 1.44688 1.36207 0.86787 0.77618 0.80357 0.83937 1.20429 1.21401 1.20511 1.61876 1.58967 0.99628 1.01340 1.23002 0.97211 0.92141 0.99039 1.20959 0.76975 0.78929 0.97595 1.92972 1.87339 1.41144 1.97423 1.93085 1.30195 1.96295 1.96442 1.22581 1.03087 0.97829 0.96167 1.21502 1.03702 0.92559 0.96724 1.21800 0.96621 0.93214 0.91316 0.93173 1.22187 0.83053 0.95174 0.99162 1.86714 1.17968 1.33184 1.96929 0.93404 0.92603 0.91919 0.93157 0.93526 0.94547 0.97232 0.93245 0.92622 0.87258 0.89610 0.89719 0.88576 0.90814 0.94053 0.93170 0.78187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.43 8.49 37.16 0.32 -2.11 16 2 C 0.08 1.31 2.01 -67.71 -0.14 1.17 16 3 H 0.09 1.48 5.73 -51.93 -0.30 1.19 16 4 C -0.10 -2.16 4.45 -26.73 -0.12 -2.27 16 5 C 0.03 0.88 4.85 -27.88 -0.14 0.74 16 6 C -0.52 -15.36 9.11 -34.44 -0.31 -15.68 16 7 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -27.87 13.29 55.43 0.74 -27.13 16 10 Si 0.88 22.54 29.54 -169.99 -5.02 17.52 16 11 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 14 N -0.49 -8.13 3.73 -218.76 -0.82 -8.95 16 15 C 0.02 0.24 4.11 -3.83 -0.02 0.22 16 16 C 0.29 4.67 2.14 -26.65 -0.06 4.62 16 17 F -0.21 -3.35 17.07 2.25 0.04 -3.31 16 18 F -0.18 -3.62 16.60 2.25 0.04 -3.58 16 19 C -0.16 -1.94 5.52 -26.61 -0.15 -2.08 16 20 C -0.11 -1.35 5.06 -26.65 -0.13 -1.48 16 21 C 0.08 1.03 1.83 -67.72 -0.12 0.91 16 22 H 0.05 0.56 6.77 -51.93 -0.35 0.21 16 23 C 0.08 1.01 6.32 37.16 0.23 1.24 16 24 O -0.54 -8.12 12.71 -35.23 -0.45 -8.56 16 25 H 0.05 0.53 6.70 -51.93 -0.35 0.18 16 26 H 0.05 0.71 6.50 -51.93 -0.34 0.37 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.05 0.96 6.17 -51.93 -0.32 0.64 16 30 H 0.04 1.07 7.70 -51.93 -0.40 0.67 16 31 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 33 H 0.06 0.74 6.60 -51.93 -0.34 0.40 16 34 H 0.11 1.99 6.01 -51.93 -0.31 1.67 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.10 1.52 7.30 -51.93 -0.38 1.14 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.05 0.61 5.89 -51.93 -0.31 0.30 16 41 H 0.37 3.96 9.12 45.56 0.42 4.38 16 LS Contribution 321.14 15.07 4.84 4.84 Total: -1.00 -33.95 321.14 -6.84 -40.79 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -5.48 Total: 1.47 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -0.73 Total: -13.07 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: -0.08 Total: -36.09 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: -0.45 Total: -8.56 kcal Atomic # 9 Polarization: -6.97 SS G_CDS: 0.08 Total: -6.89 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.95 -6.84 -40.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172493657.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.049 kcal (2) G-P(sol) polarization free energy of solvation -33.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds