Wall clock time and date at job start Mon Mar 30 2020 02:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47431 * 120.00764 * 2 1 3 5 5 C 1.53000 * 109.47192 * 184.99904 * 4 2 1 6 6 C 1.50694 * 109.47446 * 179.97438 * 5 4 2 7 7 H 1.07998 * 119.99996 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00211 * 179.97438 * 6 5 4 9 9 N 1.31508 * 119.99980 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00065 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47057 * 359.97438 * 10 8 6 12 12 H 1.48490 * 109.47240 * 120.00282 * 10 8 6 13 13 H 1.48502 * 109.47143 * 240.00280 * 10 8 6 14 14 N 1.46909 * 109.46623 * 240.00616 * 2 1 3 15 15 C 1.46898 * 111.00005 * 84.99953 * 14 2 1 16 16 H 1.09002 * 110.73139 * 34.29675 * 15 14 2 17 17 C 1.54343 * 110.82346 * 157.70221 * 15 14 2 18 18 C 1.51378 * 105.17690 * 144.77463 * 17 15 14 19 19 C 1.38509 * 130.36156 * 162.80911 * 18 17 15 20 20 C 1.38068 * 120.24732 * 179.97438 * 19 18 17 21 21 C 1.38471 * 119.91345 * 0.04503 * 20 19 18 22 22 F 1.35098 * 120.06171 * 179.97438 * 21 20 19 23 23 C 1.38335 * 119.87610 * 359.97438 * 21 20 19 24 24 C 1.38229 * 109.74680 * 342.81324 * 18 17 15 25 25 C 1.51373 * 109.76217 * 359.97438 * 24 18 17 26 26 H 1.09000 * 109.46552 * 299.99219 * 1 2 3 27 27 H 1.08992 * 109.47462 * 59.99892 * 1 2 3 28 28 H 1.09005 * 109.47003 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46762 * 304.99438 * 4 2 1 30 30 H 1.08999 * 109.47493 * 65.00088 * 4 2 1 31 31 H 1.09001 * 109.47066 * 300.00367 * 5 4 2 32 32 H 1.09001 * 109.47135 * 59.99363 * 5 4 2 33 33 H 0.97004 * 120.00510 * 179.97438 * 9 8 6 34 34 H 1.00898 * 111.00218 * 321.03825 * 14 2 1 35 35 H 1.08997 * 110.30279 * 263.70217 * 17 15 14 36 36 H 1.09002 * 110.30034 * 25.75302 * 17 15 14 37 37 H 1.07994 * 119.87883 * 0.02562 * 19 18 17 38 38 H 1.08002 * 120.04196 * 180.02562 * 20 19 18 39 39 H 1.07995 * 119.89888 * 179.97438 * 23 21 20 40 40 H 1.09006 * 110.30615 * 258.27435 * 25 24 18 41 41 H 1.09003 * 110.30327 * 136.12561 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5649 -0.6134 1.3135 6 6 4.0673 -1.3234 2.5441 7 1 3.3689 -1.8033 3.2136 8 6 5.4186 -1.3604 2.8153 9 7 6.2691 -0.7756 2.0003 10 14 6.0414 -2.2411 4.3404 11 1 4.8914 -2.8117 5.0868 12 1 6.9631 -3.3339 3.9392 13 1 6.7647 -1.2770 5.2080 14 7 2.0196 -0.6924 -1.1996 15 6 2.0823 0.2228 -2.3470 16 1 2.3515 1.2285 -2.0241 17 6 3.0744 -0.2963 -3.4093 18 6 2.4685 0.0924 -4.7409 19 6 3.0432 0.1730 -5.9986 20 6 2.2845 0.5559 -7.0867 21 6 0.9442 0.8617 -6.9208 22 9 0.1992 1.2372 -7.9833 23 6 0.3695 0.7818 -5.6650 24 6 1.1306 0.3971 -4.5741 25 6 0.7459 0.2333 -3.1192 26 1 -0.3632 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6055 -0.2619 2.1368 30 1 1.7518 -1.7717 1.2054 31 1 3.9995 -1.0728 0.4256 32 1 3.8533 0.4368 1.3572 33 1 7.2198 -0.8013 2.1913 34 1 1.4495 -1.4979 -1.4102 35 1 4.0469 0.1794 -3.2830 36 1 3.1719 -1.3796 -3.3383 37 1 4.0884 -0.0654 -6.1287 38 1 2.7359 0.6172 -8.0659 39 1 -0.6756 1.0206 -5.5351 40 1 0.2158 -0.7077 -2.9717 41 1 0.1284 1.0709 -2.7947 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172494243.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:26 Heat of formation + Delta-G solvation = -39.911309 kcal Electronic energy + Delta-G solvation = -20781.149182 eV Core-core repulsion = 17574.172946 eV Total energy + Delta-G solvation = -3206.976236 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.05012 -40.30004 -37.51255 -34.90882 -32.89737 -31.64967 -30.70649 -29.00916 -27.50056 -26.86321 -24.98354 -22.64614 -21.37804 -21.28154 -20.77130 -19.77755 -17.27820 -16.75438 -16.13472 -15.94208 -15.66909 -15.43082 -14.90444 -14.35970 -14.02464 -13.96273 -13.70291 -13.31357 -12.90796 -12.82102 -12.54555 -12.43732 -12.32452 -11.88995 -11.79087 -11.50781 -11.16737 -11.12117 -10.99691 -10.92206 -10.83056 -10.41424 -10.14599 -9.64244 -9.21197 -9.11810 -8.88911 -8.52937 -8.24328 -7.97454 -5.88850 -3.89742 0.99104 1.03991 3.35976 3.38780 3.43440 3.47359 3.94590 4.18613 4.38114 4.53992 4.65438 4.76509 4.96892 5.04632 5.07574 5.09478 5.39523 5.42907 5.46851 5.48505 5.62089 5.67823 5.74407 5.75674 5.86284 5.94153 6.06736 6.07039 6.13119 6.18065 6.26502 6.38881 6.44939 6.67527 6.73705 6.87880 7.29866 7.47256 7.74904 7.85095 8.07663 8.22678 8.57677 9.19504 9.72967 11.22182 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030878 B = 0.003181 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.562490 B = 8799.343036 C = 9579.618657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.084 3.916 3 H 0.073 0.927 4 C -0.099 4.099 5 C 0.029 3.971 6 C -0.517 4.517 7 H 0.051 0.949 8 C 0.056 3.944 9 N -0.894 5.894 10 Si 0.886 3.114 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.286 1.286 14 N -0.659 5.659 15 C 0.095 3.905 16 H 0.091 0.909 17 C -0.075 4.075 18 C -0.096 4.096 19 C -0.080 4.080 20 C -0.154 4.154 21 C 0.090 3.910 22 F -0.143 7.143 23 C -0.144 4.144 24 C -0.067 4.067 25 C -0.112 4.112 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.033 0.967 32 H 0.007 0.993 33 H 0.257 0.743 34 H 0.338 0.662 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.132 0.868 38 H 0.135 0.865 39 H 0.130 0.870 40 H 0.084 0.916 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.353 3.153 -16.410 20.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.026 4.026 3 H 0.091 0.909 4 C -0.137 4.137 5 C -0.008 4.008 6 C -0.556 4.556 7 H 0.069 0.931 8 C -0.145 4.145 9 N -0.534 5.534 10 Si 0.714 3.286 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.212 1.212 14 N -0.288 5.288 15 C -0.017 4.017 16 H 0.109 0.891 17 C -0.112 4.112 18 C -0.096 4.096 19 C -0.098 4.098 20 C -0.173 4.173 21 C 0.071 3.929 22 F -0.122 7.122 23 C -0.163 4.163 24 C -0.067 4.067 25 C -0.151 4.151 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.025 0.975 33 H 0.067 0.933 34 H 0.157 0.843 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.148 0.852 40 H 0.102 0.898 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.524 3.267 -16.269 19.650 hybrid contribution -0.732 -0.270 0.292 0.833 sum -11.256 2.997 -15.978 19.773 Atomic orbital electron populations 1.22654 0.98538 1.01591 1.01501 1.21811 0.91007 0.98339 0.91412 0.90883 1.21634 1.00635 0.98376 0.93043 1.19002 0.88270 0.96491 0.97038 1.21387 0.91835 1.33942 1.08435 0.93095 1.24995 0.97168 0.95805 0.96495 1.69982 1.02101 1.44461 1.36891 0.86636 0.78819 0.79541 0.83566 1.19903 1.21135 1.21198 1.60508 1.57495 1.08356 1.02454 1.22297 0.91864 0.97292 0.90211 0.89105 1.21105 0.99303 1.02561 0.88281 1.20841 0.94768 0.98637 0.95385 1.20521 1.00141 0.98429 0.90723 1.21008 0.92443 1.03511 1.00343 1.17483 0.89782 1.02064 0.83621 1.91483 1.76580 1.89158 1.54965 1.20538 1.00865 1.04143 0.90714 1.20403 0.94109 0.97122 0.95100 1.22082 1.00176 1.02565 0.90302 0.92313 0.93365 0.92810 0.93513 0.93476 0.94883 0.97504 0.93316 0.84269 0.89794 0.88986 0.84987 0.84760 0.85234 0.89791 0.90548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.28 8.99 37.16 0.33 -1.95 16 2 C 0.08 1.31 2.59 -67.71 -0.18 1.13 16 3 H 0.07 1.20 7.46 -51.93 -0.39 0.81 16 4 C -0.10 -1.97 4.83 -26.73 -0.13 -2.10 16 5 C 0.03 0.75 4.86 -27.89 -0.14 0.61 16 6 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 7 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.89 -27.13 13.29 55.43 0.74 -26.40 16 10 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 11 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 N -0.66 -9.64 5.56 -98.26 -0.55 -10.18 16 15 C 0.09 1.18 3.35 -66.30 -0.22 0.96 16 16 H 0.09 1.21 7.49 -51.93 -0.39 0.82 16 17 C -0.07 -0.92 6.49 -26.85 -0.17 -1.09 16 18 C -0.10 -1.09 6.14 -104.19 -0.64 -1.73 16 19 C -0.08 -0.82 10.04 -39.54 -0.40 -1.22 16 20 C -0.15 -1.55 10.03 -39.56 -0.40 -1.95 16 21 C 0.09 1.00 7.30 -39.46 -0.29 0.71 16 22 F -0.14 -1.65 17.27 2.25 0.04 -1.61 16 23 C -0.14 -1.55 10.02 -39.46 -0.40 -1.95 16 24 C -0.07 -0.75 6.14 -104.21 -0.64 -1.38 16 25 C -0.11 -1.18 5.10 -26.84 -0.14 -1.31 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.52 6.04 -51.93 -0.31 0.20 16 28 H 0.05 0.64 8.13 -51.93 -0.42 0.22 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.03 0.91 7.75 -51.93 -0.40 0.50 16 32 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.34 4.45 7.89 -39.29 -0.31 4.14 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.09 1.16 8.08 -51.93 -0.42 0.74 16 37 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.08 0.83 7.61 -51.93 -0.40 0.44 16 41 H 0.08 0.75 7.32 -51.93 -0.38 0.37 16 LS Contribution 336.12 15.07 5.07 5.07 Total: -1.00 -30.52 336.12 -9.88 -40.39 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -6.34 Total: 0.70 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: -3.81 Total: -24.84 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.19 Total: -36.58 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.52 -9.88 -40.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494243.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.481 kcal (2) G-P(sol) polarization free energy of solvation -30.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds