Wall clock time and date at job start Mon Mar 30 2020 02:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47431 * 120.00764 * 2 1 3 5 5 C 1.53000 * 109.47192 * 184.99904 * 4 2 1 6 6 C 1.50694 * 109.47446 * 179.97438 * 5 4 2 7 7 H 1.07998 * 119.99996 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00211 * 179.97438 * 6 5 4 9 9 N 1.31508 * 119.99980 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00065 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47057 * 359.97438 * 10 8 6 12 12 H 1.48490 * 109.47240 * 120.00282 * 10 8 6 13 13 H 1.48502 * 109.47143 * 240.00280 * 10 8 6 14 14 N 1.46909 * 109.46623 * 240.00616 * 2 1 3 15 15 C 1.46898 * 111.00005 * 84.99953 * 14 2 1 16 16 H 1.09002 * 110.73139 * 34.29675 * 15 14 2 17 17 C 1.54343 * 110.82346 * 157.70221 * 15 14 2 18 18 C 1.51378 * 105.17690 * 144.77463 * 17 15 14 19 19 C 1.38509 * 130.36156 * 162.80911 * 18 17 15 20 20 C 1.38068 * 120.24732 * 179.97438 * 19 18 17 21 21 C 1.38471 * 119.91345 * 0.04503 * 20 19 18 22 22 F 1.35098 * 120.06171 * 179.97438 * 21 20 19 23 23 C 1.38335 * 119.87610 * 359.97438 * 21 20 19 24 24 C 1.38229 * 109.74680 * 342.81324 * 18 17 15 25 25 C 1.51373 * 109.76217 * 359.97438 * 24 18 17 26 26 H 1.09000 * 109.46552 * 299.99219 * 1 2 3 27 27 H 1.08992 * 109.47462 * 59.99892 * 1 2 3 28 28 H 1.09005 * 109.47003 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46762 * 304.99438 * 4 2 1 30 30 H 1.08999 * 109.47493 * 65.00088 * 4 2 1 31 31 H 1.09001 * 109.47066 * 300.00367 * 5 4 2 32 32 H 1.09001 * 109.47135 * 59.99363 * 5 4 2 33 33 H 0.97004 * 120.00510 * 179.97438 * 9 8 6 34 34 H 1.00898 * 111.00218 * 321.03825 * 14 2 1 35 35 H 1.08997 * 110.30279 * 263.70217 * 17 15 14 36 36 H 1.09002 * 110.30034 * 25.75302 * 17 15 14 37 37 H 1.07994 * 119.87883 * 0.02562 * 19 18 17 38 38 H 1.08002 * 120.04196 * 180.02562 * 20 19 18 39 39 H 1.07995 * 119.89888 * 179.97438 * 23 21 20 40 40 H 1.09006 * 110.30615 * 258.27435 * 25 24 18 41 41 H 1.09003 * 110.30327 * 136.12561 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5649 -0.6134 1.3135 6 6 4.0673 -1.3234 2.5441 7 1 3.3689 -1.8033 3.2136 8 6 5.4186 -1.3604 2.8153 9 7 6.2691 -0.7756 2.0003 10 14 6.0414 -2.2411 4.3404 11 1 4.8914 -2.8117 5.0868 12 1 6.9631 -3.3339 3.9392 13 1 6.7647 -1.2770 5.2080 14 7 2.0196 -0.6924 -1.1996 15 6 2.0823 0.2228 -2.3470 16 1 2.3515 1.2285 -2.0241 17 6 3.0744 -0.2963 -3.4093 18 6 2.4685 0.0924 -4.7409 19 6 3.0432 0.1730 -5.9986 20 6 2.2845 0.5559 -7.0867 21 6 0.9442 0.8617 -6.9208 22 9 0.1992 1.2372 -7.9833 23 6 0.3695 0.7818 -5.6650 24 6 1.1306 0.3971 -4.5741 25 6 0.7459 0.2333 -3.1192 26 1 -0.3632 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6055 -0.2619 2.1368 30 1 1.7518 -1.7717 1.2054 31 1 3.9995 -1.0728 0.4256 32 1 3.8533 0.4368 1.3572 33 1 7.2198 -0.8013 2.1913 34 1 1.4495 -1.4979 -1.4102 35 1 4.0469 0.1794 -3.2830 36 1 3.1719 -1.3796 -3.3383 37 1 4.0884 -0.0654 -6.1287 38 1 2.7359 0.6172 -8.0659 39 1 -0.6756 1.0206 -5.5351 40 1 0.2158 -0.7077 -2.9717 41 1 0.1284 1.0709 -2.7947 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172494243.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:25 Heat of formation + Delta-G solvation = -55.999890 kcal Electronic energy + Delta-G solvation = -20781.846836 eV Core-core repulsion = 17574.172946 eV Total energy + Delta-G solvation = -3207.673890 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.90759 -41.19042 -38.64596 -36.16946 -34.82675 -32.49223 -32.24000 -30.39701 -28.40078 -27.82432 -26.86775 -23.61977 -23.03090 -22.13070 -21.83540 -21.19938 -18.34261 -18.11194 -17.63753 -16.97531 -16.56553 -16.51014 -16.34491 -15.85784 -15.19224 -14.87462 -14.74645 -14.39210 -14.30256 -13.99520 -13.76660 -13.73985 -13.41806 -13.18337 -13.05859 -12.84898 -12.78715 -12.40914 -12.39264 -12.17547 -11.93157 -11.83217 -11.59943 -11.46792 -11.16426 -10.87427 -10.46062 -9.92272 -9.39557 -9.12780 -8.11370 -6.21093 0.14052 0.23513 1.41324 1.41564 1.54469 2.45475 2.55714 3.10521 3.15925 3.21145 3.54879 3.71251 3.97364 4.04525 4.07870 4.17893 4.22945 4.30474 4.40708 4.50797 4.62841 4.75000 4.83016 4.83451 4.88778 4.96286 5.04347 5.08933 5.11349 5.15007 5.19475 5.21954 5.28150 5.35772 5.51712 5.59847 5.63129 5.91628 5.93990 6.07502 6.32708 6.38446 6.67959 6.99448 7.46819 8.99873 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030878 B = 0.003181 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.562490 B = 8799.343036 C = 9579.618657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.092 3.908 3 H 0.061 0.939 4 C -0.089 4.089 5 C 0.038 3.962 6 C -0.541 4.541 7 H 0.054 0.946 8 C -0.002 4.002 9 N -0.932 5.932 10 Si 0.959 3.041 11 H -0.263 1.263 12 H -0.279 1.279 13 H -0.280 1.280 14 N -0.678 5.678 15 C 0.095 3.905 16 H 0.079 0.921 17 C -0.073 4.073 18 C -0.108 4.108 19 C -0.083 4.083 20 C -0.153 4.153 21 C 0.077 3.923 22 F -0.147 7.147 23 C -0.147 4.147 24 C -0.073 4.073 25 C -0.100 4.100 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.007 0.993 32 H -0.024 1.024 33 H 0.260 0.740 34 H 0.347 0.653 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.148 0.852 38 H 0.155 0.845 39 H 0.145 0.855 40 H 0.095 0.905 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.641 2.696 -16.601 21.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.018 4.018 3 H 0.079 0.921 4 C -0.127 4.127 5 C 0.001 3.999 6 C -0.579 4.579 7 H 0.072 0.928 8 C -0.199 4.199 9 N -0.572 5.572 10 Si 0.784 3.216 11 H -0.187 1.187 12 H -0.205 1.205 13 H -0.206 1.206 14 N -0.308 5.308 15 C -0.015 4.015 16 H 0.097 0.903 17 C -0.110 4.110 18 C -0.108 4.108 19 C -0.101 4.101 20 C -0.171 4.171 21 C 0.058 3.942 22 F -0.126 7.126 23 C -0.165 4.165 24 C -0.074 4.074 25 C -0.139 4.139 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.025 0.975 32 H -0.006 1.006 33 H 0.069 0.931 34 H 0.167 0.833 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.166 0.834 38 H 0.173 0.827 39 H 0.163 0.837 40 H 0.113 0.887 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.832 2.809 -16.466 20.470 hybrid contribution -0.276 -0.114 0.306 0.428 sum -12.108 2.695 -16.160 20.372 Atomic orbital electron populations 1.22510 0.95295 1.02589 1.02722 1.21556 0.93422 0.96855 0.89927 0.92114 1.21464 0.96470 0.99136 0.95635 1.18834 0.92264 0.93786 0.95029 1.21853 0.92407 1.34185 1.09426 0.92790 1.25926 0.97493 0.96577 0.99889 1.70118 1.02500 1.45721 1.38903 0.85498 0.78387 0.78320 0.79416 1.18750 1.20504 1.20565 1.60374 1.58300 1.09237 1.02929 1.22204 0.93464 0.96157 0.89698 0.90283 1.21013 0.98829 1.02031 0.89154 1.20843 0.95134 0.99542 0.95327 1.20744 1.01061 0.97997 0.90322 1.21252 0.92110 1.02536 1.01208 1.17687 0.90270 1.02480 0.83719 1.91474 1.76721 1.89255 1.55119 1.20690 1.01646 1.03757 0.90433 1.20466 0.94025 0.97394 0.95490 1.21936 0.98813 1.03608 0.89514 0.92019 0.91226 0.91903 0.93408 0.93369 0.97464 1.00582 0.93097 0.83290 0.91065 0.89608 0.83395 0.82695 0.83738 0.88701 0.89357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.88 8.99 71.98 0.65 -3.23 16 2 C 0.09 2.83 2.59 44.91 0.12 2.95 16 3 H 0.06 2.01 7.46 -2.39 -0.02 2.00 16 4 C -0.09 -3.56 4.83 30.59 0.15 -3.42 16 5 C 0.04 2.02 4.86 29.85 0.15 2.16 16 6 C -0.54 -31.35 9.11 25.60 0.23 -31.11 16 7 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 8 C 0.00 -0.10 5.46 84.66 0.46 0.37 16 9 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16 10 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 11 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 13 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 14 N -0.68 -19.75 5.56 -464.78 -2.58 -22.34 16 15 C 0.10 2.37 3.35 45.83 0.15 2.53 16 16 H 0.08 2.14 7.49 -2.39 -0.02 2.12 16 17 C -0.07 -1.80 6.49 30.52 0.20 -1.60 16 18 C -0.11 -2.39 6.14 -19.59 -0.12 -2.51 16 19 C -0.08 -1.61 10.04 22.29 0.22 -1.39 16 20 C -0.15 -2.81 10.03 22.28 0.22 -2.58 16 21 C 0.08 1.60 7.30 22.35 0.16 1.76 16 22 F -0.15 -3.17 17.27 44.97 0.78 -2.39 16 23 C -0.15 -2.91 10.02 22.35 0.22 -2.69 16 24 C -0.07 -1.53 6.14 -19.60 -0.12 -1.65 16 25 C -0.10 -1.92 5.10 30.52 0.16 -1.77 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.07 1.29 6.04 -2.39 -0.01 1.27 16 28 H 0.06 1.32 8.13 -2.38 -0.02 1.30 16 29 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.01 0.40 7.75 -2.39 -0.02 0.38 16 32 H -0.02 -1.42 8.14 -2.39 -0.02 -1.44 16 33 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 34 H 0.35 8.82 7.89 -89.70 -0.71 8.11 16 35 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.09 2.20 8.08 -2.39 -0.02 2.18 16 37 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 38 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 39 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 40 H 0.09 1.64 7.61 -2.38 -0.02 1.63 16 41 H 0.09 1.50 7.32 -2.39 -0.02 1.49 16 Total: -1.00 -66.14 336.12 3.66 -62.48 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.31 Total: 14.74 kcal Atomic # 6 Polarization: -45.02 SS G_CDS: 2.85 Total: -42.17 kcal Atomic # 7 Polarization: -77.47 SS G_CDS: -2.30 Total: -79.77 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.78 Total: -2.39 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -66.14 3.66 -62.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494243.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.479 kcal (2) G-P(sol) polarization free energy of solvation -66.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds