Wall clock time and date at job start Mon Mar 30 2020 02:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46895 * 2 1 4 4 C 1.52998 * 109.47486 * 119.99956 * 2 1 3 5 5 C 1.52995 * 109.47453 * 185.00118 * 4 2 1 6 6 C 1.50704 * 109.46998 * 180.02562 * 5 4 2 7 7 H 1.07996 * 120.00276 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99912 * 180.02562 * 6 5 4 9 9 N 1.31521 * 120.00172 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00191 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46750 * 60.00032 * 10 8 6 12 12 H 1.48504 * 109.47258 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47131 * 300.00218 * 10 8 6 14 14 N 1.46900 * 109.47313 * 240.00120 * 2 1 3 15 15 C 1.46894 * 111.00318 * 84.99911 * 14 2 1 16 16 C 1.50700 * 109.47455 * 180.02562 * 15 14 2 17 17 C 1.38357 * 120.34376 * 269.95461 * 16 15 14 18 18 N 1.31928 * 121.07760 * 180.02562 * 17 16 15 19 19 C 1.31697 * 121.88005 * 359.97438 * 18 17 16 20 20 C 1.39518 * 120.56559 * 0.02562 * 19 18 17 21 21 C 1.47840 * 120.55823 * 179.97438 * 20 19 18 22 22 N 1.34769 * 120.00069 * 0.02562 * 21 20 19 23 23 O 1.21551 * 119.99952 * 180.02562 * 21 20 19 24 24 C 1.38350 * 120.35231 * 89.99905 * 16 15 14 25 25 H 1.09000 * 109.47431 * 60.00021 * 1 2 3 26 26 H 1.09000 * 109.46895 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47477 * 299.99615 * 1 2 3 28 28 H 1.09004 * 109.46893 * 305.00272 * 4 2 1 29 29 H 1.08998 * 109.47017 * 65.00001 * 4 2 1 30 30 H 1.08994 * 109.47222 * 300.00007 * 5 4 2 31 31 H 1.08998 * 109.47104 * 59.99937 * 5 4 2 32 32 H 0.96997 * 120.00307 * 180.02562 * 9 8 6 33 33 H 1.00904 * 111.00034 * 321.04176 * 14 2 1 34 34 H 1.08999 * 109.47130 * 59.99633 * 15 14 2 35 35 H 1.09004 * 109.47288 * 300.00263 * 15 14 2 36 36 H 1.08001 * 119.46421 * 0.02562 * 17 16 15 37 37 H 1.07994 * 119.71534 * 180.02562 * 19 18 17 38 38 H 0.97004 * 120.00227 * 0.02562 * 22 21 20 39 39 H 0.97003 * 120.00064 * 180.02562 * 22 21 20 40 40 H 1.08006 * 120.85287 * 0.25139 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3137 6 6 4.0672 -1.3242 2.5438 7 1 3.3688 -1.8046 3.2130 8 6 5.4184 -1.3604 2.8156 9 7 6.2690 -0.7750 2.0010 10 14 6.0412 -2.2410 4.3407 11 1 5.6487 -3.6720 4.2809 12 1 7.5212 -2.1363 4.4032 13 1 5.4486 -1.6154 5.5501 14 7 2.0197 -0.6925 -1.1994 15 6 2.0825 0.2225 -2.3469 16 6 2.5874 -0.5218 -3.5560 17 6 3.9431 -0.5783 -3.8263 18 7 4.4009 -1.2254 -4.8809 19 6 3.5968 -1.8443 -5.7203 20 6 2.2164 -1.8344 -5.5183 21 6 1.3137 -2.5288 -6.4610 22 7 1.8227 -3.1788 -7.5262 23 8 0.1126 -2.5133 -6.2754 24 6 1.7001 -1.1551 -4.4080 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6054 -0.2617 2.1370 29 1 1.7517 -1.7715 1.2056 30 1 3.9994 -1.0727 0.4260 31 1 3.8531 0.4370 1.3573 32 1 7.2196 -0.8007 2.1920 33 1 1.4496 -1.4980 -1.4100 34 1 2.7588 1.0462 -2.1182 35 1 1.0871 0.6163 -2.5526 36 1 4.6380 -0.0846 -3.1631 37 1 4.0094 -2.3638 -6.5724 38 1 2.7813 -3.1915 -7.6742 39 1 1.2304 -3.6341 -8.1450 40 1 0.6364 -1.1231 -4.2235 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172494257.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:14 Heat of formation + Delta-G solvation = -46.783758 kcal Electronic energy + Delta-G solvation = -20671.154090 eV Core-core repulsion = 17483.799804 eV Total energy + Delta-G solvation = -3187.354287 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.68917 -39.97076 -38.54730 -35.60849 -34.96695 -34.30809 -33.00559 -31.84545 -30.13509 -27.05378 -26.35488 -25.67628 -23.62228 -23.02691 -21.68288 -21.23561 -19.08996 -18.34265 -18.26595 -17.70226 -16.97495 -16.60148 -16.49728 -16.09557 -15.97493 -15.32358 -14.98186 -14.70862 -14.41150 -14.22806 -14.12199 -13.95116 -13.69122 -13.40772 -13.11385 -12.92176 -12.79965 -12.46635 -12.32924 -11.83561 -11.50999 -11.49619 -11.19500 -10.98081 -10.94549 -10.76001 -10.51559 -10.45368 -10.12967 -9.14749 -8.11431 -6.21206 -0.43490 0.12558 1.40730 1.43674 1.51296 1.75336 2.40869 2.45224 2.73888 3.20731 3.28560 3.42632 3.66576 3.75641 3.85130 3.94592 4.04638 4.13120 4.31761 4.47188 4.49833 4.63091 4.75492 4.80577 4.90157 5.00068 5.04685 5.12208 5.17601 5.31335 5.49059 5.50527 5.61627 5.81659 5.91677 6.05926 6.23153 6.31958 6.37769 6.56127 6.81359 6.98411 7.20710 7.46416 8.99342 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019508 B = 0.003588 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.989679 B = 7802.083189 C = 8591.783819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.092 3.908 3 H 0.068 0.932 4 C -0.089 4.089 5 C 0.040 3.960 6 C -0.544 4.544 7 H 0.053 0.947 8 C 0.000 4.000 9 N -0.930 5.930 10 Si 0.958 3.042 11 H -0.270 1.270 12 H -0.283 1.283 13 H -0.268 1.268 14 N -0.687 5.687 15 C 0.107 3.893 16 C -0.134 4.134 17 C 0.137 3.863 18 N -0.506 5.506 19 C 0.138 3.862 20 C -0.203 4.203 21 C 0.573 3.427 22 N -0.825 5.825 23 O -0.583 6.583 24 C -0.015 4.015 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.043 0.957 30 H 0.005 0.995 31 H -0.020 1.020 32 H 0.261 0.739 33 H 0.341 0.659 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.158 0.842 37 H 0.196 0.804 38 H 0.418 0.582 39 H 0.416 0.584 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.287 -1.151 -19.219 21.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 H 0.087 0.913 4 C -0.127 4.127 5 C 0.002 3.998 6 C -0.583 4.583 7 H 0.071 0.929 8 C -0.197 4.197 9 N -0.570 5.570 10 Si 0.783 3.217 11 H -0.195 1.195 12 H -0.209 1.209 13 H -0.193 1.193 14 N -0.318 5.318 15 C -0.022 4.022 16 C -0.137 4.137 17 C -0.019 4.019 18 N -0.214 5.214 19 C -0.021 4.021 20 C -0.208 4.208 21 C 0.358 3.642 22 N -0.389 5.389 23 O -0.464 6.464 24 C -0.042 4.042 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.024 0.976 31 H -0.002 1.002 32 H 0.069 0.931 33 H 0.159 0.841 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.175 0.825 37 H 0.213 0.787 38 H 0.250 0.750 39 H 0.249 0.751 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.246 -0.941 -18.972 20.707 hybrid contribution -0.870 -0.414 0.574 1.121 sum -9.116 -1.355 -18.398 20.577 Atomic orbital electron populations 1.22403 0.95503 1.02372 1.02642 1.21536 0.93230 0.97262 0.89764 0.91347 1.21461 0.96668 0.98934 0.95608 1.18813 0.92049 0.93959 0.94939 1.21797 0.92459 1.34442 1.09566 0.92893 1.25910 0.97431 0.96521 0.99867 1.70098 1.02519 1.45533 1.38897 0.85622 0.77045 0.79241 0.79840 1.19496 1.20865 1.19296 1.60466 1.58561 1.09637 1.03124 1.20806 1.00398 0.94272 0.86707 1.20795 0.94457 1.00756 0.97655 1.23073 0.93930 0.92452 0.92428 1.67794 1.40105 1.09080 1.04426 1.23508 0.88169 0.93072 0.97345 1.20967 0.95678 1.05062 0.99105 1.18047 0.86775 0.77978 0.81404 1.43528 1.13498 1.55057 1.26861 1.90811 1.16936 1.63071 1.75598 1.21720 1.01012 0.90530 0.90919 0.91662 0.92289 0.91584 0.93176 0.93776 0.97620 1.00187 0.93058 0.84081 0.90043 0.92344 0.82458 0.78707 0.74984 0.75063 0.83567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 9.16 71.98 0.66 -3.44 16 2 C 0.09 2.90 2.59 44.91 0.12 3.01 16 3 H 0.07 2.24 7.80 -2.39 -0.02 2.22 16 4 C -0.09 -3.63 4.83 30.59 0.15 -3.48 16 5 C 0.04 2.12 4.86 29.85 0.15 2.26 16 6 C -0.54 -31.87 9.11 25.60 0.23 -31.64 16 7 H 0.05 2.99 7.74 -2.91 -0.02 2.96 16 8 C 0.00 0.01 5.46 84.65 0.46 0.47 16 9 N -0.93 -57.78 13.29 21.45 0.28 -57.50 16 10 Si 0.96 45.40 29.54 68.60 2.03 47.43 16 11 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 13 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 14 N -0.69 -21.02 5.69 -495.59 -2.82 -23.84 16 15 C 0.11 2.68 5.63 85.56 0.48 3.16 16 16 C -0.13 -3.32 5.40 -19.81 -0.11 -3.43 16 17 C 0.14 3.71 10.85 84.71 0.92 4.63 16 18 N -0.51 -12.80 10.35 -194.75 -2.01 -14.81 16 19 C 0.14 2.57 10.71 85.02 0.91 3.48 16 20 C -0.20 -4.17 5.89 -19.99 -0.12 -4.28 16 21 C 0.57 11.24 8.05 86.79 0.70 11.94 16 22 N -0.82 -7.78 8.83 -175.62 -1.55 -9.33 16 23 O -0.58 -16.37 17.26 -3.88 -0.07 -16.43 16 24 C -0.01 -0.34 9.39 22.73 0.21 -0.13 16 25 H 0.06 1.33 7.45 -2.39 -0.02 1.31 16 26 H 0.06 1.38 8.13 -2.39 -0.02 1.36 16 27 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 29 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.01 0.31 7.75 -2.39 -0.02 0.29 16 31 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 32 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 33 H 0.34 9.71 8.46 -89.69 -0.76 8.95 16 34 H 0.08 2.13 8.01 -2.39 -0.02 2.11 16 35 H 0.06 1.22 7.39 -2.39 -0.02 1.20 16 36 H 0.16 4.43 8.06 -2.91 -0.02 4.41 16 37 H 0.20 1.75 6.42 -2.91 -0.02 1.73 16 38 H 0.42 1.31 6.90 -92.71 -0.64 0.67 16 39 H 0.42 2.78 8.93 -92.71 -0.83 1.96 16 40 H 0.15 3.24 7.74 -2.91 -0.02 3.22 16 Total: -1.00 -75.93 339.86 -0.53 -76.46 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -1.15 Total: 15.48 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: 4.76 Total: -17.45 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -6.10 Total: -105.48 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.07 Total: -16.43 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -75.93 -0.53 -76.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494257.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.672 kcal (2) G-P(sol) polarization free energy of solvation -75.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds