Wall clock time and date at job start Mon Mar 30 2020 02:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46837 * 2 1 4 4 C 1.53000 * 109.46931 * 240.00093 * 2 1 3 5 5 C 1.52998 * 109.46946 * 175.00274 * 4 2 1 6 6 C 1.50702 * 109.47039 * 179.97438 * 5 4 2 7 7 H 1.07994 * 119.99679 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00102 * 179.97438 * 6 5 4 9 9 N 1.31522 * 120.00057 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 120.00104 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47409 * 59.99830 * 10 8 6 12 12 H 1.48498 * 109.47280 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47251 * 299.99919 * 10 8 6 14 14 N 1.46901 * 109.47021 * 120.00193 * 2 1 3 15 15 C 1.46905 * 110.99870 * 274.99736 * 14 2 1 16 16 C 1.50697 * 109.47066 * 180.02562 * 15 14 2 17 17 C 1.38349 * 120.34865 * 269.72413 * 16 15 14 18 18 N 1.31935 * 121.07919 * 179.69727 * 17 16 15 19 19 C 1.31695 * 121.87698 * 0.59197 * 18 17 16 20 20 C 1.39524 * 120.56476 * 359.70495 * 19 18 17 21 21 C 1.47844 * 120.55395 * 179.97438 * 20 19 18 22 22 N 1.34774 * 120.00387 * 0.02562 * 21 20 19 23 23 O 1.21554 * 119.99957 * 180.02562 * 21 20 19 24 24 C 1.38365 * 120.34704 * 90.00113 * 16 15 14 25 25 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47106 * 300.00284 * 1 2 3 27 27 H 1.08993 * 109.47190 * 59.99909 * 1 2 3 28 28 H 1.09000 * 109.46957 * 294.99682 * 4 2 1 29 29 H 1.08999 * 109.47080 * 55.00118 * 4 2 1 30 30 H 1.09000 * 109.46809 * 299.99498 * 5 4 2 31 31 H 1.08999 * 109.47359 * 60.00014 * 5 4 2 32 32 H 0.96986 * 119.99916 * 180.02562 * 9 8 6 33 33 H 1.00901 * 111.00067 * 38.94911 * 14 2 1 34 34 H 1.09001 * 109.46798 * 300.00327 * 15 14 2 35 35 H 1.08998 * 109.46961 * 60.00043 * 15 14 2 36 36 H 1.07994 * 119.46197 * 359.97438 * 17 16 15 37 37 H 1.08000 * 119.71862 * 179.71884 * 19 18 17 38 38 H 0.97007 * 119.99774 * 0.02562 * 22 21 20 39 39 H 0.97001 * 120.00108 * 180.02562 * 22 21 20 40 40 H 1.07997 * 120.85559 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 6 4.0672 -1.3243 -2.5438 7 1 3.3687 -1.8053 -3.2125 8 6 5.4184 -1.3606 -2.8156 9 7 6.2689 -0.7743 -2.0015 10 14 6.0410 -2.2412 -4.3407 11 1 5.4486 -1.6155 -5.5501 12 1 7.5210 -2.1366 -4.4033 13 1 5.6485 -3.6722 -4.2811 14 7 2.0197 -0.6925 1.1994 15 6 2.0825 0.2226 2.3469 16 6 2.5885 -0.5215 3.5557 17 6 1.7017 -1.1506 4.4112 18 7 2.1292 -1.8110 5.4703 19 6 3.4093 -1.8932 5.7686 20 6 4.3671 -1.2811 4.9595 21 6 5.8041 -1.3730 5.2950 22 7 6.1984 -2.0528 6.3899 23 8 6.6299 -0.8355 4.5832 24 6 3.9446 -0.5780 3.8248 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.7516 -1.7715 -1.2056 29 1 1.6054 -0.2617 -2.1370 30 1 3.8531 0.4369 -1.3574 31 1 3.9994 -1.0729 -0.4260 32 1 7.2194 -0.7996 -2.1929 33 1 1.4495 -1.4979 1.4100 34 1 2.7589 1.0462 2.1182 35 1 1.0871 0.6163 2.5525 36 1 0.6424 -1.1040 4.2062 37 1 3.7204 -2.4392 6.6470 38 1 5.5393 -2.4821 6.9577 39 1 7.1411 -2.1128 6.6101 40 1 4.6587 -0.0926 3.1761 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172494258.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:17 Heat of formation + Delta-G solvation = -19.140618 kcal Electronic energy + Delta-G solvation = -20806.176666 eV Core-core repulsion = 17620.021076 eV Total energy + Delta-G solvation = -3186.155590 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.73701 -38.96377 -37.27727 -34.26197 -33.70143 -32.73894 -31.97749 -30.27921 -28.79655 -25.63337 -24.96927 -24.54499 -22.62349 -21.32709 -20.60523 -19.79756 -18.21202 -17.37232 -16.83483 -16.09592 -15.85778 -15.45936 -15.12377 -14.90660 -14.41857 -14.25272 -13.76112 -13.68043 -13.13724 -13.02935 -12.78323 -12.46548 -12.33252 -12.00091 -11.79167 -11.37629 -11.14523 -10.80363 -10.48279 -10.42927 -10.23737 -9.92353 -9.87884 -9.62863 -9.57399 -9.24044 -9.18224 -8.88357 -8.19746 -7.94558 -5.83772 -3.85467 0.49132 1.10068 2.73211 3.24908 3.41392 3.45940 3.48011 3.68722 4.07086 4.44846 4.57680 4.63390 4.67053 4.77553 4.89043 5.05169 5.25974 5.33961 5.49378 5.51311 5.53768 5.64174 5.77065 5.94961 6.04249 6.19180 6.24936 6.38013 6.41101 6.56838 6.65682 6.88456 7.07664 7.29490 7.42678 7.64775 7.72364 7.87868 8.06365 8.10980 8.26670 8.61207 9.23287 9.77063 11.27144 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013288 B = 0.004590 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.726192 B = 6099.209192 C = 7843.520063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.084 3.916 3 H 0.074 0.926 4 C -0.098 4.098 5 C 0.029 3.971 6 C -0.521 4.521 7 H 0.050 0.950 8 C 0.057 3.943 9 N -0.893 5.893 10 Si 0.886 3.114 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.278 1.278 14 N -0.666 5.666 15 C 0.101 3.899 16 C -0.130 4.130 17 C 0.125 3.875 18 N -0.489 5.489 19 C 0.127 3.873 20 C -0.192 4.192 21 C 0.567 3.433 22 N -0.852 5.852 23 O -0.525 6.525 24 C 0.011 3.989 25 H 0.054 0.946 26 H 0.044 0.956 27 H 0.060 0.940 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.007 0.993 31 H 0.032 0.968 32 H 0.259 0.741 33 H 0.336 0.664 34 H 0.086 0.914 35 H 0.039 0.961 36 H 0.157 0.843 37 H 0.155 0.845 38 H 0.399 0.601 39 H 0.406 0.594 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.009 -0.315 18.607 20.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.025 4.025 3 H 0.092 0.908 4 C -0.136 4.136 5 C -0.008 4.008 6 C -0.559 4.559 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.532 5.532 10 Si 0.715 3.285 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.297 5.297 15 C -0.028 4.028 16 C -0.133 4.133 17 C -0.032 4.032 18 N -0.197 5.197 19 C -0.032 4.032 20 C -0.198 4.198 21 C 0.352 3.648 22 N -0.417 5.417 23 O -0.401 6.401 24 C -0.015 4.015 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.025 0.975 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.154 0.846 34 H 0.105 0.895 35 H 0.057 0.943 36 H 0.174 0.826 37 H 0.172 0.828 38 H 0.228 0.772 39 H 0.237 0.763 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.368 -0.186 18.417 20.230 hybrid contribution 0.169 -0.342 -0.786 0.874 sum -8.199 -0.528 17.630 19.451 Atomic orbital electron populations 1.22543 0.98468 1.01608 1.01367 1.21775 0.90991 0.98472 0.91311 0.90777 1.21630 1.00687 0.98362 0.92926 1.18993 0.88213 0.96497 0.97062 1.21294 0.91840 1.34244 1.08552 0.93205 1.24996 0.97142 0.95768 0.96456 1.69963 1.02250 1.44147 1.36886 0.86756 0.77618 0.80288 0.83874 1.20426 1.21393 1.20410 1.60568 1.57981 1.08735 1.02369 1.20858 0.99377 0.94997 0.87594 1.20898 0.93871 1.00505 0.97991 1.22868 1.00276 0.90875 0.89160 1.67673 1.16850 1.16931 1.18238 1.22847 0.88181 0.94699 0.97471 1.20927 0.94212 1.05048 0.99589 1.18089 0.88063 0.78105 0.80574 1.43714 1.12483 1.57137 1.28389 1.90899 1.53918 1.45701 1.49578 1.21778 0.95756 0.91297 0.92716 0.92732 0.93689 0.92122 0.93488 0.93422 0.97479 0.94969 0.93138 0.84610 0.89527 0.94282 0.82555 0.82756 0.77160 0.76257 0.82841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.27 9.16 37.16 0.34 -1.93 16 2 C 0.08 1.34 2.59 -67.71 -0.18 1.16 16 3 H 0.07 1.23 7.80 -51.93 -0.40 0.82 16 4 C -0.10 -2.01 4.83 -26.73 -0.13 -2.14 16 5 C 0.03 0.78 4.86 -27.88 -0.14 0.64 16 6 C -0.52 -15.26 9.11 -34.44 -0.31 -15.58 16 7 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -28.02 13.29 55.43 0.74 -27.29 16 10 Si 0.89 22.46 29.54 -169.99 -5.02 17.44 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 N -0.67 -10.18 5.69 -107.99 -0.61 -10.79 16 15 C 0.10 1.28 5.63 -4.97 -0.03 1.25 16 16 C -0.13 -1.62 5.40 -104.54 -0.56 -2.18 16 17 C 0.12 1.37 10.85 -17.47 -0.19 1.18 16 18 N -0.49 -5.60 10.35 -12.91 -0.13 -5.73 16 19 C 0.13 1.30 10.71 -17.13 -0.18 1.11 16 20 C -0.19 -2.39 5.89 -104.82 -0.62 -3.01 16 21 C 0.57 7.34 8.05 -12.33 -0.10 7.24 16 22 N -0.85 -6.58 8.83 30.53 0.27 -6.32 16 23 O -0.53 -9.42 17.26 5.32 0.09 -9.33 16 24 C 0.01 0.16 9.39 -38.87 -0.37 -0.21 16 25 H 0.05 0.66 8.13 -51.93 -0.42 0.24 16 26 H 0.04 0.48 7.45 -51.92 -0.39 0.10 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.03 0.92 7.75 -51.93 -0.40 0.52 16 32 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 33 H 0.34 4.67 8.46 -39.29 -0.33 4.34 16 34 H 0.09 1.17 8.01 -51.93 -0.42 0.76 16 35 H 0.04 0.41 7.39 -51.93 -0.38 0.02 16 36 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.16 0.95 6.42 -52.49 -0.34 0.62 16 38 H 0.40 1.74 6.90 -40.82 -0.28 1.46 16 39 H 0.41 2.65 8.93 -40.82 -0.36 2.29 16 40 H 0.15 2.47 7.74 -52.49 -0.41 2.06 16 LS Contribution 339.86 15.07 5.12 5.12 Total: -1.00 -35.99 339.86 -7.90 -43.89 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -5.79 Total: 3.84 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -2.56 Total: -10.84 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: 0.26 Total: -50.12 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.99 -7.90 -43.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494258.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.746 kcal (2) G-P(sol) polarization free energy of solvation -35.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds