Wall clock time and date at job start Mon Mar 30 2020 02:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46837 * 2 1 4 4 C 1.53000 * 109.46931 * 240.00093 * 2 1 3 5 5 C 1.52998 * 109.46946 * 175.00274 * 4 2 1 6 6 C 1.50702 * 109.47039 * 179.97438 * 5 4 2 7 7 H 1.07994 * 119.99679 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00102 * 179.97438 * 6 5 4 9 9 N 1.31522 * 120.00057 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 120.00104 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47409 * 59.99830 * 10 8 6 12 12 H 1.48498 * 109.47280 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47251 * 299.99919 * 10 8 6 14 14 N 1.46901 * 109.47021 * 120.00193 * 2 1 3 15 15 C 1.46905 * 110.99870 * 274.99736 * 14 2 1 16 16 C 1.50697 * 109.47066 * 180.02562 * 15 14 2 17 17 C 1.38349 * 120.34865 * 269.72413 * 16 15 14 18 18 N 1.31935 * 121.07919 * 179.69727 * 17 16 15 19 19 C 1.31695 * 121.87698 * 0.59197 * 18 17 16 20 20 C 1.39524 * 120.56476 * 359.70495 * 19 18 17 21 21 C 1.47844 * 120.55395 * 179.97438 * 20 19 18 22 22 N 1.34774 * 120.00387 * 0.02562 * 21 20 19 23 23 O 1.21554 * 119.99957 * 180.02562 * 21 20 19 24 24 C 1.38365 * 120.34704 * 90.00113 * 16 15 14 25 25 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47106 * 300.00284 * 1 2 3 27 27 H 1.08993 * 109.47190 * 59.99909 * 1 2 3 28 28 H 1.09000 * 109.46957 * 294.99682 * 4 2 1 29 29 H 1.08999 * 109.47080 * 55.00118 * 4 2 1 30 30 H 1.09000 * 109.46809 * 299.99498 * 5 4 2 31 31 H 1.08999 * 109.47359 * 60.00014 * 5 4 2 32 32 H 0.96986 * 119.99916 * 180.02562 * 9 8 6 33 33 H 1.00901 * 111.00067 * 38.94911 * 14 2 1 34 34 H 1.09001 * 109.46798 * 300.00327 * 15 14 2 35 35 H 1.08998 * 109.46961 * 60.00043 * 15 14 2 36 36 H 1.07994 * 119.46197 * 359.97438 * 17 16 15 37 37 H 1.08000 * 119.71862 * 179.71884 * 19 18 17 38 38 H 0.97007 * 119.99774 * 0.02562 * 22 21 20 39 39 H 0.97001 * 120.00108 * 180.02562 * 22 21 20 40 40 H 1.07997 * 120.85559 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 6 4.0672 -1.3243 -2.5438 7 1 3.3687 -1.8053 -3.2125 8 6 5.4184 -1.3606 -2.8156 9 7 6.2689 -0.7743 -2.0015 10 14 6.0410 -2.2412 -4.3407 11 1 5.4486 -1.6155 -5.5501 12 1 7.5210 -2.1366 -4.4033 13 1 5.6485 -3.6722 -4.2811 14 7 2.0197 -0.6925 1.1994 15 6 2.0825 0.2226 2.3469 16 6 2.5885 -0.5215 3.5557 17 6 1.7017 -1.1506 4.4112 18 7 2.1292 -1.8110 5.4703 19 6 3.4093 -1.8932 5.7686 20 6 4.3671 -1.2811 4.9595 21 6 5.8041 -1.3730 5.2950 22 7 6.1984 -2.0528 6.3899 23 8 6.6299 -0.8355 4.5832 24 6 3.9446 -0.5780 3.8248 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.7516 -1.7715 -1.2056 29 1 1.6054 -0.2617 -2.1370 30 1 3.8531 0.4369 -1.3574 31 1 3.9994 -1.0729 -0.4260 32 1 7.2194 -0.7996 -2.1929 33 1 1.4495 -1.4979 1.4100 34 1 2.7589 1.0462 2.1182 35 1 1.0871 0.6163 2.5525 36 1 0.6424 -1.1040 4.2062 37 1 3.7204 -2.4392 6.6470 38 1 5.5393 -2.4821 6.9577 39 1 7.1411 -2.1128 6.6101 40 1 4.6587 -0.0926 3.1761 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172494258.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:16 Heat of formation + Delta-G solvation = -47.744077 kcal Electronic energy + Delta-G solvation = -20807.417005 eV Core-core repulsion = 17620.021076 eV Total energy + Delta-G solvation = -3187.395929 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.68599 -39.99956 -38.54086 -35.62011 -35.00459 -34.30591 -33.05027 -31.84251 -30.13001 -27.05859 -26.38979 -25.64094 -23.64748 -23.10095 -21.61749 -21.28309 -19.10095 -18.36979 -18.30096 -17.70705 -16.80020 -16.67927 -16.51952 -16.19428 -16.00662 -15.41148 -14.90548 -14.71931 -14.41919 -14.19130 -14.11670 -14.02847 -13.64377 -13.26848 -13.18833 -12.87651 -12.81612 -12.58105 -12.34024 -11.85539 -11.52944 -11.51400 -11.22034 -10.98726 -10.93038 -10.76995 -10.53417 -10.48978 -10.14277 -9.11729 -8.13877 -6.25200 -0.43527 0.11625 1.37910 1.41841 1.49642 1.74419 2.39387 2.42944 2.74188 3.18248 3.28683 3.41639 3.69062 3.75739 3.86346 3.92269 4.09627 4.11986 4.36352 4.41734 4.51696 4.60586 4.73786 4.81669 4.95774 5.00965 5.05978 5.13915 5.24130 5.33054 5.48289 5.48887 5.58553 5.80049 5.88286 6.02583 6.23868 6.32437 6.33937 6.62913 6.76694 6.95788 7.21525 7.43353 8.97018 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013288 B = 0.004590 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.726192 B = 6099.209192 C = 7843.520063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.091 3.909 3 H 0.061 0.939 4 C -0.088 4.088 5 C 0.038 3.962 6 C -0.543 4.543 7 H 0.057 0.943 8 C -0.003 4.003 9 N -0.935 5.935 10 Si 0.961 3.039 11 H -0.264 1.264 12 H -0.285 1.285 13 H -0.267 1.267 14 N -0.692 5.692 15 C 0.108 3.892 16 C -0.136 4.136 17 C 0.137 3.863 18 N -0.495 5.495 19 C 0.144 3.856 20 C -0.205 4.205 21 C 0.563 3.437 22 N -0.822 5.822 23 O -0.590 6.590 24 C -0.016 4.016 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.047 0.953 29 H 0.051 0.949 30 H -0.025 1.025 31 H -0.001 1.001 32 H 0.260 0.740 33 H 0.345 0.655 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.190 0.810 37 H 0.199 0.801 38 H 0.419 0.581 39 H 0.415 0.585 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.421 -1.832 19.676 22.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.019 4.019 3 H 0.080 0.920 4 C -0.126 4.126 5 C 0.000 4.000 6 C -0.582 4.582 7 H 0.075 0.925 8 C -0.200 4.200 9 N -0.575 5.575 10 Si 0.786 3.214 11 H -0.189 1.189 12 H -0.211 1.211 13 H -0.192 1.192 14 N -0.323 5.323 15 C -0.021 4.021 16 C -0.139 4.139 17 C -0.019 4.019 18 N -0.203 5.203 19 C -0.015 4.015 20 C -0.210 4.210 21 C 0.349 3.651 22 N -0.387 5.387 23 O -0.471 6.471 24 C -0.044 4.044 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.069 0.931 30 H -0.007 1.007 31 H 0.018 0.982 32 H 0.068 0.932 33 H 0.164 0.836 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.207 0.793 37 H 0.216 0.784 38 H 0.252 0.748 39 H 0.248 0.752 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.817 -1.741 19.543 22.405 hybrid contribution 0.939 0.113 -1.030 1.399 sum -9.878 -1.628 18.513 21.047 Atomic orbital electron populations 1.22382 0.94774 1.02666 1.02817 1.21529 0.93731 0.96910 0.89682 0.92018 1.21457 0.96162 0.99161 0.95819 1.18828 0.92554 0.93703 0.94866 1.21810 0.92481 1.34369 1.09497 0.92466 1.25995 0.97460 0.96543 1.00047 1.70135 1.02540 1.45710 1.39156 0.85564 0.76936 0.79292 0.79634 1.18926 1.21093 1.19213 1.60386 1.58960 1.09856 1.03146 1.20783 1.00624 0.93956 0.86741 1.20859 0.93205 1.01328 0.98467 1.23309 1.01376 0.89139 0.88077 1.67825 1.17083 1.17095 1.18307 1.23438 0.87255 0.93170 0.97654 1.20962 0.94533 1.05770 0.99741 1.18297 0.87913 0.77863 0.81044 1.43466 1.13672 1.54984 1.26591 1.90870 1.55367 1.48795 1.52052 1.21682 0.96306 0.92736 0.93642 0.91827 0.91118 0.91799 0.93434 0.93063 1.00662 0.98206 0.93157 0.83553 0.91753 0.90789 0.79317 0.78426 0.74766 0.75217 0.86661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.74 9.16 71.98 0.66 -3.08 16 2 C 0.09 2.89 2.59 44.92 0.12 3.00 16 3 H 0.06 2.10 7.80 -2.39 -0.02 2.08 16 4 C -0.09 -3.65 4.83 30.59 0.15 -3.50 16 5 C 0.04 2.10 4.86 29.85 0.15 2.24 16 6 C -0.54 -32.66 9.11 25.60 0.23 -32.42 16 7 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 8 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 9 N -0.93 -60.99 13.29 21.45 0.28 -60.71 16 10 Si 0.96 46.67 29.54 68.60 2.03 48.70 16 11 H -0.26 -12.17 7.11 99.48 0.71 -11.47 16 12 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 13 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 14 N -0.69 -21.21 5.69 -495.56 -2.82 -24.03 16 15 C 0.11 2.71 5.63 85.55 0.48 3.19 16 16 C -0.14 -3.37 5.40 -19.81 -0.11 -3.48 16 17 C 0.14 2.67 10.85 84.70 0.92 3.59 16 18 N -0.50 -9.85 10.35 -194.75 -2.01 -11.87 16 19 C 0.14 2.57 10.71 85.02 0.91 3.48 16 20 C -0.20 -5.13 5.89 -19.99 -0.12 -5.25 16 21 C 0.56 14.99 8.05 86.79 0.70 15.69 16 22 N -0.82 -11.57 8.83 -175.61 -1.55 -13.12 16 23 O -0.59 -22.82 17.26 -3.88 -0.07 -22.89 16 24 C -0.02 -0.50 9.39 22.73 0.21 -0.29 16 25 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 26 H 0.07 1.25 7.45 -2.38 -0.02 1.23 16 27 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 30 H -0.02 -1.53 8.14 -2.39 -0.02 -1.55 16 31 H 0.00 -0.03 7.75 -2.39 -0.02 -0.05 16 32 H 0.26 16.05 8.31 -92.72 -0.77 15.28 16 33 H 0.35 9.19 8.46 -89.69 -0.76 8.43 16 34 H 0.06 1.88 8.01 -2.39 -0.02 1.86 16 35 H 0.07 1.34 7.39 -2.39 -0.02 1.32 16 36 H 0.19 2.38 8.06 -2.91 -0.02 2.36 16 37 H 0.20 1.60 6.42 -2.91 -0.02 1.58 16 38 H 0.42 2.40 6.90 -92.70 -0.64 1.76 16 39 H 0.42 4.92 8.93 -92.71 -0.83 4.09 16 40 H 0.12 4.30 7.74 -2.91 -0.02 4.28 16 Total: -1.00 -83.45 339.86 -0.53 -83.98 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -1.15 Total: 16.49 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: 4.76 Total: -16.55 kcal Atomic # 7 Polarization: -103.62 SS G_CDS: -6.10 Total: -109.72 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.07 Total: -22.89 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -83.45 -0.53 -83.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494258.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.239 kcal (2) G-P(sol) polarization free energy of solvation -83.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds