Wall clock time and date at job start Mon Mar 30 2020 02:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08990 * 109.47608 * 2 1 4 4 C 1.53007 * 109.46877 * 240.00218 * 2 1 3 5 5 C 1.52999 * 109.46931 * 65.72485 * 4 2 1 6 6 C 1.50706 * 109.47032 * 174.83254 * 5 4 2 7 7 H 1.08006 * 119.99615 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99917 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99672 * 179.97438 * 8 6 5 10 10 Si 1.86792 * 119.99996 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47442 * 89.99895 * 10 8 6 12 12 H 1.48506 * 109.46891 * 210.00091 * 10 8 6 13 13 H 1.48504 * 109.47337 * 329.99561 * 10 8 6 14 14 N 1.46894 * 109.47183 * 120.00639 * 2 1 3 15 15 C 1.47162 * 111.00104 * 182.19958 * 14 2 1 16 16 C 1.52896 * 108.52079 * 165.35186 * 15 14 2 17 17 C 1.50721 * 109.96737 * 50.40428 * 16 15 14 18 18 C 1.38644 * 118.47212 * 163.16982 * 17 16 15 19 19 C 1.38251 * 120.33070 * 179.51070 * 18 17 16 20 20 F 1.35095 * 120.11476 * 179.97438 * 19 18 17 21 21 C 1.38485 * 119.77577 * 0.02562 * 19 18 17 22 22 C 1.37980 * 119.84228 * 0.09754 * 21 19 18 23 23 C 1.37848 * 121.65646 * 342.88627 * 17 16 15 24 24 C 1.46624 * 111.00540 * 59.20056 * 14 2 1 25 25 H 1.09002 * 109.47416 * 59.99960 * 1 2 3 26 26 H 1.09006 * 109.47348 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46894 * 299.99634 * 1 2 3 28 28 H 1.09000 * 109.47135 * 185.72821 * 4 2 1 29 29 H 1.09001 * 109.46894 * 305.72727 * 4 2 1 30 30 H 1.09004 * 109.46791 * 294.82817 * 5 4 2 31 31 H 1.08992 * 109.47191 * 54.83436 * 5 4 2 32 32 H 0.96995 * 120.00052 * 179.97438 * 9 8 6 33 33 H 1.09006 * 109.62383 * 285.06674 * 15 14 2 34 34 H 1.08995 * 109.62912 * 45.44497 * 15 14 2 35 35 H 1.08996 * 109.39968 * 290.24148 * 16 15 14 36 36 H 1.09000 * 109.37198 * 170.53932 * 16 15 14 37 37 H 1.07996 * 119.83014 * 359.50576 * 18 17 16 38 38 H 1.07997 * 120.08090 * 180.02562 * 21 19 18 39 39 H 1.08000 * 119.79622 * 179.97438 * 22 21 19 40 40 H 1.09005 * 109.30163 * 55.73007 * 24 14 2 41 41 H 1.09002 * 109.30122 * 296.35732 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6507 0.0784 -2.4943 6 6 2.2605 -0.5631 -3.7142 7 1 2.8654 -1.4519 -3.6116 8 6 2.0460 -0.0152 -4.9611 9 7 2.5785 -0.5747 -6.0256 10 14 1.0003 1.5224 -5.1384 11 1 1.8657 2.7246 -5.0328 12 1 0.3260 1.5126 -6.4615 13 1 -0.0223 1.5525 -4.0620 14 7 2.0196 -0.6926 1.1993 15 6 3.4898 -0.6667 1.2600 16 6 3.9246 -1.0612 2.6717 17 6 3.2367 -2.3371 3.0846 18 6 3.7483 -3.0455 4.1609 19 6 3.1416 -4.2154 4.5787 20 9 3.6442 -4.9024 5.6277 21 6 2.0175 -4.6812 3.9175 22 6 1.5106 -3.9767 2.8448 23 6 2.1199 -2.8032 2.4244 24 6 1.5340 -2.0754 1.2427 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.1251 -0.8110 -1.1996 29 1 1.5952 -1.7150 -1.3021 30 1 0.5653 0.0899 -2.5941 31 1 2.0179 1.1002 -2.3993 32 1 2.4273 -0.1895 -6.9029 33 1 3.8984 -1.3753 0.5394 34 1 3.8481 0.3367 1.0303 35 1 3.6594 -0.2655 3.3678 36 1 5.0042 -1.2103 2.6891 37 1 4.6253 -2.6815 4.6755 38 1 1.5394 -5.5943 4.2399 39 1 0.6342 -4.3409 2.3295 40 1 1.8227 -2.5877 0.3249 41 1 0.4470 -2.0732 1.3238 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172499462.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:45 Heat of formation + Delta-G solvation = -31.966500 kcal Electronic energy + Delta-G solvation = -21294.452688 eV Core-core repulsion = 18087.820964 eV Total energy + Delta-G solvation = -3206.631724 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.00749 -40.28895 -37.93805 -34.49828 -33.04775 -32.13995 -30.57975 -29.75879 -28.41230 -25.70850 -24.72367 -23.43366 -22.55884 -21.31711 -20.41853 -18.76891 -17.35426 -16.92972 -16.51253 -16.17553 -15.72504 -15.03754 -14.78833 -14.63369 -14.24929 -14.11436 -13.80599 -13.37152 -13.32901 -13.22941 -12.64369 -12.55580 -12.47282 -12.00918 -11.77267 -11.49322 -11.39358 -11.22348 -10.95185 -10.80877 -10.65880 -10.49743 -9.98546 -9.91314 -9.68846 -9.22402 -9.04387 -8.57794 -8.55615 -7.98236 -6.06829 -4.04949 1.02781 1.07963 3.28236 3.35973 3.38779 3.41372 3.99568 4.09612 4.42555 4.50409 4.59894 4.75537 4.95251 5.06312 5.18870 5.26813 5.29047 5.33840 5.48633 5.52070 5.60854 5.63563 5.75515 5.76688 5.85954 5.93353 5.97508 6.05985 6.12497 6.15492 6.17002 6.38047 6.41303 6.48713 6.58713 6.76695 6.81733 7.16542 7.24348 7.30493 7.40717 7.77249 8.51360 8.97792 9.55708 11.06786 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033346 B = 0.003494 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.481420 B = 8010.686330 C = 8085.176835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.075 3.925 3 H 0.082 0.918 4 C -0.134 4.134 5 C -0.009 4.009 6 C -0.521 4.521 7 H 0.069 0.931 8 C 0.065 3.935 9 N -0.904 5.904 10 Si 0.880 3.120 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.265 1.265 14 N -0.527 5.527 15 C 0.048 3.952 16 C -0.076 4.076 17 C -0.039 4.039 18 C -0.156 4.156 19 C 0.090 3.910 20 F -0.144 7.144 21 C -0.157 4.157 22 C -0.088 4.088 23 C -0.078 4.078 24 C 0.083 3.917 25 H 0.066 0.934 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.018 0.982 31 H 0.010 0.990 32 H 0.263 0.737 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.061 0.939 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.056 -3.385 20.630 20.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.033 4.033 3 H 0.100 0.900 4 C -0.173 4.173 5 C -0.047 4.047 6 C -0.559 4.559 7 H 0.087 0.913 8 C -0.136 4.136 9 N -0.543 5.543 10 Si 0.708 3.292 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.189 1.189 14 N -0.251 5.251 15 C -0.080 4.080 16 C -0.114 4.114 17 C -0.039 4.039 18 C -0.175 4.175 19 C 0.071 3.929 20 F -0.123 7.123 21 C -0.176 4.176 22 C -0.107 4.107 23 C -0.079 4.079 24 C -0.044 4.044 25 H 0.085 0.915 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.037 0.963 31 H 0.028 0.972 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.079 0.921 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.213 -3.131 20.896 21.164 hybrid contribution -0.051 0.095 -0.780 0.787 sum -1.265 -3.037 20.116 20.383 Atomic orbital electron populations 1.21885 0.94646 1.01809 1.01797 1.21934 0.95636 0.98148 0.87562 0.89967 1.22127 1.00359 0.99616 0.95165 1.19537 0.96626 0.95239 0.93292 1.21163 1.31764 1.12957 0.90012 0.91307 1.25047 0.95488 0.97141 0.95882 1.69919 1.45085 1.40752 0.98591 0.86770 0.81220 0.83774 0.77469 1.20317 1.21429 1.18946 1.62641 1.08790 1.13974 1.39660 1.22143 0.88479 1.01971 0.95438 1.20597 0.99082 0.94084 0.97596 1.19461 0.94510 0.96067 0.93880 1.21057 1.02050 0.95159 0.99221 1.17599 0.95349 0.92566 0.87400 1.91479 1.86900 1.78868 1.55042 1.21014 0.96756 1.01905 0.97930 1.20927 0.99811 0.94155 0.95779 1.19790 0.95240 0.95330 0.97525 1.21063 1.00149 0.88682 0.94550 0.91492 0.92871 0.92714 0.92582 0.92721 0.96347 0.97158 0.92754 0.93515 0.89931 0.89586 0.90244 0.84977 0.84914 0.84951 0.92089 0.89106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.69 37.16 0.32 -1.71 16 2 C 0.07 1.14 2.42 -67.72 -0.16 0.97 16 3 H 0.08 1.26 8.06 -51.93 -0.42 0.85 16 4 C -0.13 -2.50 3.89 -26.73 -0.10 -2.61 16 5 C -0.01 -0.21 3.68 -27.88 -0.10 -0.31 16 6 C -0.52 -14.69 9.66 -34.44 -0.33 -15.02 16 7 H 0.07 2.10 7.99 -52.48 -0.42 1.68 16 8 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 9 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 10 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 14 N -0.53 -7.13 4.69 -228.20 -1.07 -8.20 16 15 C 0.05 0.60 4.77 -3.73 -0.02 0.58 16 16 C -0.08 -0.81 5.94 -27.93 -0.17 -0.97 16 17 C -0.04 -0.45 5.77 -104.60 -0.60 -1.06 16 18 C -0.16 -1.72 9.64 -39.43 -0.38 -2.10 16 19 C 0.09 1.03 7.30 -39.49 -0.29 0.74 16 20 F -0.14 -1.71 17.27 2.25 0.04 -1.67 16 21 C -0.16 -1.64 10.03 -39.59 -0.40 -2.04 16 22 C -0.09 -0.94 9.64 -39.49 -0.38 -1.32 16 23 C -0.08 -0.95 5.79 -104.61 -0.61 -1.55 16 24 C 0.08 1.07 4.47 -5.16 -0.02 1.04 16 25 H 0.07 1.02 6.71 -51.93 -0.35 0.67 16 26 H 0.05 0.71 6.47 -51.93 -0.34 0.38 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.08 6.52 -51.93 -0.34 0.74 16 29 H 0.05 1.03 6.64 -51.93 -0.34 0.69 16 30 H 0.02 0.42 5.90 -51.93 -0.31 0.12 16 31 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 32 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 33 H 0.05 0.65 6.98 -51.93 -0.36 0.29 16 34 H 0.08 1.00 7.96 -51.93 -0.41 0.58 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 40 H 0.06 0.86 6.21 -51.93 -0.32 0.54 16 41 H 0.09 1.09 6.47 -51.93 -0.34 0.75 16 LS Contribution 321.71 15.07 4.85 4.85 Total: -1.00 -30.43 321.71 -9.46 -39.90 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -6.04 Total: -1.08 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: -3.34 Total: -23.55 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: -0.30 Total: -35.27 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.43 -9.46 -39.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499462.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.930 kcal (2) G-P(sol) polarization free energy of solvation -30.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds