Wall clock time and date at job start Mon Mar 30 2020 02:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08990 * 109.47608 * 2 1 4 4 C 1.53007 * 109.46877 * 240.00218 * 2 1 3 5 5 C 1.52999 * 109.46931 * 65.72485 * 4 2 1 6 6 C 1.50706 * 109.47032 * 174.83254 * 5 4 2 7 7 H 1.08006 * 119.99615 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99917 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99672 * 179.97438 * 8 6 5 10 10 Si 1.86792 * 119.99996 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47442 * 89.99895 * 10 8 6 12 12 H 1.48506 * 109.46891 * 210.00091 * 10 8 6 13 13 H 1.48504 * 109.47337 * 329.99561 * 10 8 6 14 14 N 1.46894 * 109.47183 * 120.00639 * 2 1 3 15 15 C 1.47162 * 111.00104 * 182.19958 * 14 2 1 16 16 C 1.52896 * 108.52079 * 165.35186 * 15 14 2 17 17 C 1.50721 * 109.96737 * 50.40428 * 16 15 14 18 18 C 1.38644 * 118.47212 * 163.16982 * 17 16 15 19 19 C 1.38251 * 120.33070 * 179.51070 * 18 17 16 20 20 F 1.35095 * 120.11476 * 179.97438 * 19 18 17 21 21 C 1.38485 * 119.77577 * 0.02562 * 19 18 17 22 22 C 1.37980 * 119.84228 * 0.09754 * 21 19 18 23 23 C 1.37848 * 121.65646 * 342.88627 * 17 16 15 24 24 C 1.46624 * 111.00540 * 59.20056 * 14 2 1 25 25 H 1.09002 * 109.47416 * 59.99960 * 1 2 3 26 26 H 1.09006 * 109.47348 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46894 * 299.99634 * 1 2 3 28 28 H 1.09000 * 109.47135 * 185.72821 * 4 2 1 29 29 H 1.09001 * 109.46894 * 305.72727 * 4 2 1 30 30 H 1.09004 * 109.46791 * 294.82817 * 5 4 2 31 31 H 1.08992 * 109.47191 * 54.83436 * 5 4 2 32 32 H 0.96995 * 120.00052 * 179.97438 * 9 8 6 33 33 H 1.09006 * 109.62383 * 285.06674 * 15 14 2 34 34 H 1.08995 * 109.62912 * 45.44497 * 15 14 2 35 35 H 1.08996 * 109.39968 * 290.24148 * 16 15 14 36 36 H 1.09000 * 109.37198 * 170.53932 * 16 15 14 37 37 H 1.07996 * 119.83014 * 359.50576 * 18 17 16 38 38 H 1.07997 * 120.08090 * 180.02562 * 21 19 18 39 39 H 1.08000 * 119.79622 * 179.97438 * 22 21 19 40 40 H 1.09005 * 109.30163 * 55.73007 * 24 14 2 41 41 H 1.09002 * 109.30122 * 296.35732 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6507 0.0784 -2.4943 6 6 2.2605 -0.5631 -3.7142 7 1 2.8654 -1.4519 -3.6116 8 6 2.0460 -0.0152 -4.9611 9 7 2.5785 -0.5747 -6.0256 10 14 1.0003 1.5224 -5.1384 11 1 1.8657 2.7246 -5.0328 12 1 0.3260 1.5126 -6.4615 13 1 -0.0223 1.5525 -4.0620 14 7 2.0196 -0.6926 1.1993 15 6 3.4898 -0.6667 1.2600 16 6 3.9246 -1.0612 2.6717 17 6 3.2367 -2.3371 3.0846 18 6 3.7483 -3.0455 4.1609 19 6 3.1416 -4.2154 4.5787 20 9 3.6442 -4.9024 5.6277 21 6 2.0175 -4.6812 3.9175 22 6 1.5106 -3.9767 2.8448 23 6 2.1199 -2.8032 2.4244 24 6 1.5340 -2.0754 1.2427 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.1251 -0.8110 -1.1996 29 1 1.5952 -1.7150 -1.3021 30 1 0.5653 0.0899 -2.5941 31 1 2.0179 1.1002 -2.3993 32 1 2.4273 -0.1895 -6.9029 33 1 3.8984 -1.3753 0.5394 34 1 3.8481 0.3367 1.0303 35 1 3.6594 -0.2655 3.3678 36 1 5.0042 -1.2103 2.6891 37 1 4.6253 -2.6815 4.6755 38 1 1.5394 -5.5943 4.2399 39 1 0.6342 -4.3409 2.3295 40 1 1.8227 -2.5877 0.3249 41 1 0.4470 -2.0732 1.3238 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172499462.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:45 Heat of formation + Delta-G solvation = -49.118746 kcal Electronic energy + Delta-G solvation = -21295.196465 eV Core-core repulsion = 18087.820964 eV Total energy + Delta-G solvation = -3207.375501 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.89021 -41.24115 -39.01580 -35.90111 -34.62541 -33.42454 -31.91432 -30.87609 -29.51104 -27.27165 -25.94804 -24.36767 -23.42789 -22.99882 -21.59156 -19.94933 -18.93300 -18.19066 -17.58818 -17.19240 -16.61224 -16.35507 -15.99604 -15.74480 -15.59331 -15.50247 -14.87487 -14.75611 -14.41083 -14.23510 -14.18403 -13.78160 -13.58149 -13.26991 -13.00159 -12.82842 -12.69298 -12.32302 -12.26676 -12.06106 -11.90428 -11.76653 -11.63448 -11.50856 -11.37825 -11.20305 -10.75507 -9.87969 -9.50486 -9.12915 -8.29758 -6.34120 0.15290 0.25785 1.36539 1.38373 1.50516 2.36380 2.55968 2.92682 3.06051 3.24849 3.65837 3.71650 3.92395 3.98877 4.12323 4.16993 4.26947 4.30807 4.38682 4.50176 4.59357 4.62829 4.65702 4.75873 4.82762 4.89911 4.98311 4.99228 5.02833 5.09469 5.16714 5.19169 5.22255 5.27703 5.34997 5.49676 5.55996 5.60933 5.68650 5.92235 6.11212 6.15306 6.29625 6.74312 7.30718 8.87388 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033346 B = 0.003494 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.481420 B = 8010.686330 C = 8085.176835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.084 3.916 3 H 0.086 0.914 4 C -0.123 4.123 5 C -0.004 4.004 6 C -0.533 4.533 7 H 0.024 0.976 8 C 0.001 3.999 9 N -0.955 5.955 10 Si 0.953 3.047 11 H -0.267 1.267 12 H -0.286 1.286 13 H -0.240 1.240 14 N -0.521 5.521 15 C 0.044 3.956 16 C -0.070 4.070 17 C -0.050 4.050 18 C -0.158 4.158 19 C 0.077 3.923 20 F -0.148 7.148 21 C -0.157 4.157 22 C -0.089 4.089 23 C -0.095 4.095 24 C 0.086 3.914 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.042 0.958 29 H 0.046 0.954 30 H 0.026 0.974 31 H 0.018 0.982 32 H 0.266 0.734 33 H 0.026 0.974 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.149 0.851 38 H 0.153 0.847 39 H 0.151 0.849 40 H 0.042 0.958 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.346 -2.141 22.558 22.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 H 0.104 0.896 4 C -0.162 4.162 5 C -0.042 4.042 6 C -0.571 4.571 7 H 0.042 0.958 8 C -0.195 4.195 9 N -0.596 5.596 10 Si 0.776 3.224 11 H -0.192 1.192 12 H -0.212 1.212 13 H -0.164 1.164 14 N -0.244 5.244 15 C -0.084 4.084 16 C -0.107 4.107 17 C -0.051 4.051 18 C -0.177 4.177 19 C 0.058 3.942 20 F -0.127 7.127 21 C -0.176 4.176 22 C -0.107 4.107 23 C -0.096 4.096 24 C -0.042 4.042 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.044 0.956 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.045 0.955 34 H 0.106 0.894 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.166 0.834 38 H 0.171 0.829 39 H 0.169 0.831 40 H 0.060 0.940 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.500 -1.896 22.857 23.071 hybrid contribution 0.435 -0.419 -1.376 1.503 sum -2.065 -2.316 21.481 21.704 Atomic orbital electron populations 1.21855 0.93433 1.02303 1.02231 1.21807 0.96561 0.97840 0.86254 0.89623 1.21990 0.99565 0.99156 0.95506 1.19477 0.96506 0.95588 0.92670 1.21550 1.31272 1.11823 0.92499 0.95794 1.26085 0.97034 1.01100 0.95319 1.70086 1.47123 1.43002 0.99364 0.85617 0.79769 0.78912 0.78119 1.19170 1.21196 1.16354 1.62702 1.09333 1.14364 1.37978 1.22216 0.87905 1.01781 0.96458 1.20583 0.99986 0.93964 0.96155 1.19628 0.94604 0.96626 0.94209 1.21214 1.02478 0.94944 0.99022 1.17828 0.95898 0.92914 0.87574 1.91468 1.87015 1.78970 1.55259 1.21263 0.96386 1.02466 0.97488 1.21148 1.00259 0.93584 0.95756 1.19862 0.95945 0.96133 0.97640 1.21044 1.00801 0.88108 0.94247 0.92434 0.92421 0.90814 0.93975 0.93528 0.95558 0.96374 0.92564 0.95526 0.89422 0.88509 0.88588 0.83363 0.82932 0.83092 0.94034 0.88106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 8.69 71.98 0.63 -3.02 16 2 C 0.08 2.41 2.42 44.92 0.11 2.52 16 3 H 0.09 2.45 8.06 -2.39 -0.02 2.43 16 4 C -0.12 -4.62 3.89 30.60 0.12 -4.50 16 5 C 0.00 -0.20 3.68 29.85 0.11 -0.09 16 6 C -0.53 -30.87 9.66 25.60 0.25 -30.62 16 7 H 0.02 1.54 7.99 -2.91 -0.02 1.52 16 8 C 0.00 0.05 5.47 84.65 0.46 0.52 16 9 N -0.95 -60.43 13.96 21.45 0.30 -60.13 16 10 Si 0.95 43.81 27.47 68.60 1.88 45.69 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 13 H -0.24 -10.03 6.54 99.48 0.65 -9.38 16 14 N -0.52 -13.36 4.69 -875.90 -4.11 -17.47 16 15 C 0.04 1.08 4.77 86.22 0.41 1.49 16 16 C -0.07 -1.35 5.94 29.82 0.18 -1.18 16 17 C -0.05 -1.10 5.77 -19.85 -0.11 -1.21 16 18 C -0.16 -3.21 9.64 22.37 0.22 -2.99 16 19 C 0.08 1.64 7.30 22.33 0.16 1.80 16 20 F -0.15 -3.30 17.27 44.97 0.78 -2.52 16 21 C -0.16 -2.99 10.03 22.27 0.22 -2.77 16 22 C -0.09 -1.74 9.64 22.33 0.22 -1.53 16 23 C -0.10 -2.18 5.79 -19.85 -0.12 -2.29 16 24 C 0.09 2.11 4.47 85.59 0.38 2.49 16 25 H 0.06 1.60 6.71 -2.39 -0.02 1.58 16 26 H 0.06 1.42 6.47 -2.38 -0.02 1.41 16 27 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.04 1.67 6.52 -2.39 -0.02 1.65 16 29 H 0.05 1.80 6.64 -2.39 -0.02 1.78 16 30 H 0.03 1.16 5.90 -2.39 -0.01 1.14 16 31 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 32 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 33 H 0.03 0.75 6.98 -2.38 -0.02 0.73 16 34 H 0.09 2.02 7.96 -2.39 -0.02 2.00 16 35 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 38 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 39 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 40 H 0.04 1.19 6.21 -2.38 -0.01 1.17 16 41 H 0.10 2.24 6.47 -2.39 -0.02 2.23 16 Total: -1.00 -66.62 321.71 3.04 -63.58 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 0.96 Total: 12.24 kcal Atomic # 6 Polarization: -44.62 SS G_CDS: 3.23 Total: -41.39 kcal Atomic # 7 Polarization: -73.79 SS G_CDS: -3.81 Total: -77.60 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.78 Total: -2.52 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.69 kcal Total: -66.62 3.04 -63.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499462.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.462 kcal (2) G-P(sol) polarization free energy of solvation -66.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds