Wall clock time and date at job start Mon Mar 30 2020 02:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47103 * 2 1 4 4 C 1.53002 * 109.47321 * 119.99402 * 2 1 3 5 5 C 1.53000 * 109.47369 * 185.00090 * 4 2 1 6 6 C 1.50703 * 109.47095 * 180.02562 * 5 4 2 7 7 H 1.07997 * 119.99852 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99791 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99896 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99864 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47364 * 89.99251 * 10 8 6 12 12 H 1.48496 * 109.46841 * 209.99874 * 10 8 6 13 13 H 1.48505 * 109.47110 * 329.99424 * 10 8 6 14 14 N 1.46896 * 109.47274 * 239.99804 * 2 1 3 15 15 C 1.47154 * 110.99903 * 59.99552 * 14 2 1 16 16 C 1.52902 * 108.50392 * 165.35138 * 15 14 2 17 17 C 1.50715 * 109.95162 * 50.47359 * 16 15 14 18 18 C 1.38645 * 118.46325 * 163.03399 * 17 16 15 19 19 C 1.38258 * 120.33096 * 179.58902 * 18 17 16 20 20 F 1.35096 * 120.11510 * 180.02562 * 19 18 17 21 21 C 1.38491 * 119.76677 * 359.70536 * 19 18 17 22 22 C 1.37969 * 119.84500 * 0.66734 * 21 19 18 23 23 C 1.37844 * 121.66042 * 342.80958 * 17 16 15 24 24 C 1.46634 * 110.99685 * 296.98023 * 14 2 1 25 25 H 1.08997 * 109.47371 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47042 * 300.00108 * 1 2 3 27 27 H 1.08996 * 109.47122 * 60.00108 * 1 2 3 28 28 H 1.09001 * 109.47373 * 305.00488 * 4 2 1 29 29 H 1.09005 * 109.46827 * 64.99868 * 4 2 1 30 30 H 1.08995 * 109.46642 * 300.00128 * 5 4 2 31 31 H 1.08996 * 109.46805 * 60.00399 * 5 4 2 32 32 H 0.97003 * 119.99679 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.62866 * 45.64994 * 15 14 2 34 34 H 1.08993 * 109.79525 * 285.14892 * 15 14 2 35 35 H 1.09006 * 109.38643 * 290.32933 * 16 15 14 36 36 H 1.08999 * 109.39106 * 170.63020 * 16 15 14 37 37 H 1.08001 * 119.83532 * 359.60830 * 18 17 16 38 38 H 1.07994 * 120.07646 * 180.38149 * 21 19 18 39 39 H 1.08002 * 119.79658 * 179.72808 * 22 21 19 40 40 H 1.08995 * 109.27435 * 55.70389 * 24 14 2 41 41 H 1.09004 * 109.26472 * 296.23793 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5649 -0.6131 1.3138 6 6 4.0672 -1.3240 2.5440 7 1 3.3688 -1.8050 3.2127 8 6 5.4185 -1.3602 2.8157 9 7 6.2689 -0.7748 2.0011 10 14 6.0413 -2.2419 4.3402 11 1 6.3219 -3.6623 4.0107 12 1 7.2871 -1.5884 4.8156 13 1 5.0097 -2.1756 5.4065 14 7 2.0197 -0.6925 -1.1994 15 6 1.5478 -0.0253 -2.4231 16 6 2.3651 -0.5461 -3.6058 17 6 2.3758 -2.0532 -3.5996 18 6 2.7473 -2.7161 -4.7593 19 6 2.7788 -4.0979 -4.7941 20 9 3.1419 -4.7393 -5.9263 21 6 2.4432 -4.8220 -3.6623 22 6 2.0662 -4.1613 -2.5112 23 6 2.0322 -2.7746 -2.4764 24 6 1.6093 -2.1002 -1.1976 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6054 -0.2616 2.1370 29 1 1.7516 -1.7714 1.2057 30 1 3.9994 -1.0727 0.4261 31 1 3.8531 0.4371 1.3574 32 1 7.2196 -0.8006 2.1921 33 1 1.6851 1.0519 -2.3291 34 1 0.4925 -0.2476 -2.5812 35 1 3.3878 -0.1766 -3.5294 36 1 1.9221 -0.1910 -4.5362 37 1 3.0137 -2.1502 -5.6398 38 1 2.4720 -5.9014 -3.6821 39 1 1.8004 -4.7269 -1.6304 40 1 0.5252 -2.1588 -1.1014 41 1 2.0728 -2.6089 -0.3523 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172499463.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:48 Heat of formation + Delta-G solvation = -31.681946 kcal Electronic energy + Delta-G solvation = -21596.142402 eV Core-core repulsion = 18389.523018 eV Total energy + Delta-G solvation = -3206.619384 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.84916 -40.13526 -37.77407 -34.26258 -32.87450 -31.98293 -30.41065 -29.16215 -28.59395 -25.27067 -24.73441 -23.30994 -22.39304 -21.36561 -20.11918 -18.77509 -17.17968 -16.60361 -16.17464 -16.09748 -15.56948 -14.96627 -14.63480 -14.51232 -14.38943 -13.78302 -13.64097 -13.31257 -13.09165 -13.05085 -12.63125 -12.20800 -11.96208 -11.77734 -11.70997 -11.56370 -11.31338 -11.08014 -10.89387 -10.76144 -10.50928 -10.45937 -10.13641 -9.64596 -9.23954 -8.90803 -8.86450 -8.40486 -8.24921 -7.82748 -5.90061 -3.91927 1.21283 1.26607 3.35916 3.42381 3.44986 3.59608 4.14881 4.26472 4.52418 4.66984 4.76522 4.92662 5.11403 5.19846 5.30268 5.36784 5.43651 5.45493 5.48127 5.58690 5.61780 5.68842 5.82301 5.87211 5.96544 6.04285 6.13619 6.17367 6.21649 6.22419 6.30404 6.37842 6.54148 6.69726 6.82653 6.95276 7.22932 7.41365 7.51079 7.82754 8.03340 8.19154 8.54136 9.17047 9.71152 11.20807 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015665 B = 0.004905 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.024401 B = 5707.464164 C = 6744.784483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.081 3.919 3 H 0.082 0.918 4 C -0.106 4.106 5 C 0.029 3.971 6 C -0.521 4.521 7 H 0.051 0.949 8 C 0.058 3.942 9 N -0.893 5.893 10 Si 0.886 3.114 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.275 1.275 14 N -0.512 5.512 15 C 0.051 3.949 16 C -0.077 4.077 17 C -0.039 4.039 18 C -0.157 4.157 19 C 0.089 3.911 20 F -0.145 7.145 21 C -0.157 4.157 22 C -0.086 4.086 23 C -0.075 4.075 24 C 0.087 3.913 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.031 0.969 31 H 0.010 0.990 32 H 0.258 0.742 33 H 0.079 0.921 34 H 0.035 0.965 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.048 0.952 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.704 -2.121 -12.555 17.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.027 4.027 3 H 0.100 0.900 4 C -0.144 4.144 5 C -0.008 4.008 6 C -0.559 4.559 7 H 0.069 0.931 8 C -0.143 4.143 9 N -0.532 5.532 10 Si 0.714 3.286 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.200 1.200 14 N -0.235 5.235 15 C -0.078 4.078 16 C -0.115 4.115 17 C -0.039 4.039 18 C -0.176 4.176 19 C 0.069 3.931 20 F -0.124 7.124 21 C -0.176 4.176 22 C -0.105 4.105 23 C -0.076 4.076 24 C -0.041 4.041 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.029 0.971 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.053 0.947 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.065 0.935 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.974 -2.076 -12.604 16.841 hybrid contribution -0.259 -0.739 0.609 0.992 sum -11.233 -2.815 -11.995 16.673 Atomic orbital electron populations 1.22528 0.98802 1.01620 1.01595 1.21933 0.91100 0.98885 0.90808 0.89997 1.21792 1.00973 0.98308 0.93339 1.19009 0.87913 0.96871 0.97021 1.21318 0.91855 1.34213 1.08538 0.93122 1.24986 0.97148 0.95705 0.96442 1.69978 1.02201 1.44132 1.36909 0.86702 0.78333 0.79855 0.83725 1.20798 1.21331 1.20023 1.62445 1.58574 1.01045 1.01424 1.22122 0.96213 0.99119 0.90306 1.20592 1.02346 0.90371 0.98144 1.19425 0.96685 0.96092 0.91690 1.21025 1.04488 0.92412 0.99641 1.17586 1.01978 0.90629 0.82859 1.91468 1.89549 1.82076 1.49321 1.20997 1.03611 1.00509 0.92483 1.20938 0.98295 0.93646 0.97579 1.19781 0.99392 0.93298 0.95085 1.21082 0.97977 0.89835 0.95183 0.92741 0.92115 0.93250 0.93092 0.93283 0.95071 0.97116 0.93197 0.90284 0.94677 0.89153 0.90583 0.85095 0.84986 0.84914 0.93459 0.87860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.42 8.51 37.16 0.32 -2.10 16 2 C 0.08 1.30 2.37 -67.71 -0.16 1.14 16 3 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 4 C -0.11 -2.10 4.32 -26.73 -0.12 -2.21 16 5 C 0.03 0.74 4.86 -27.88 -0.14 0.60 16 6 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 7 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -27.19 13.29 55.43 0.74 -26.45 16 10 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 14 N -0.51 -8.12 4.16 -228.21 -0.95 -9.07 16 15 C 0.05 0.65 4.68 -3.74 -0.02 0.63 16 16 C -0.08 -0.94 5.94 -27.93 -0.17 -1.11 16 17 C -0.04 -0.53 5.77 -104.61 -0.60 -1.13 16 18 C -0.16 -2.02 9.64 -39.42 -0.38 -2.40 16 19 C 0.09 1.18 7.30 -39.48 -0.29 0.90 16 20 F -0.15 -1.97 17.27 2.25 0.04 -1.93 16 21 C -0.16 -1.98 10.03 -39.59 -0.40 -2.38 16 22 C -0.09 -1.13 9.64 -39.49 -0.38 -1.51 16 23 C -0.08 -1.08 5.79 -104.61 -0.61 -1.69 16 24 C 0.09 1.30 4.45 -5.15 -0.02 1.28 16 25 H 0.05 0.69 6.38 -51.93 -0.33 0.36 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.57 6.76 -51.93 -0.35 0.22 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.05 0.94 6.16 -51.93 -0.32 0.62 16 30 H 0.03 0.86 7.75 -51.93 -0.40 0.46 16 31 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.08 0.94 8.00 -51.93 -0.42 0.53 16 34 H 0.04 0.42 7.11 -51.93 -0.37 0.05 16 35 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 38 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 39 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 40 H 0.05 0.64 6.15 -51.93 -0.32 0.32 16 41 H 0.10 1.75 6.33 -51.93 -0.33 1.42 16 LS Contribution 327.14 15.07 4.93 4.93 Total: -1.00 -30.77 327.14 -9.82 -40.58 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -6.18 Total: -1.44 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: -3.37 Total: -23.44 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: -0.21 Total: -35.52 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.77 -9.82 -40.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499463.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.901 kcal (2) G-P(sol) polarization free energy of solvation -30.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds