Wall clock time and date at job start Mon Mar 30 2020 02:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47103 * 2 1 4 4 C 1.53002 * 109.47321 * 119.99402 * 2 1 3 5 5 C 1.53000 * 109.47369 * 185.00090 * 4 2 1 6 6 C 1.50703 * 109.47095 * 180.02562 * 5 4 2 7 7 H 1.07997 * 119.99852 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99791 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99896 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99864 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47364 * 89.99251 * 10 8 6 12 12 H 1.48496 * 109.46841 * 209.99874 * 10 8 6 13 13 H 1.48505 * 109.47110 * 329.99424 * 10 8 6 14 14 N 1.46896 * 109.47274 * 239.99804 * 2 1 3 15 15 C 1.47154 * 110.99903 * 59.99552 * 14 2 1 16 16 C 1.52902 * 108.50392 * 165.35138 * 15 14 2 17 17 C 1.50715 * 109.95162 * 50.47359 * 16 15 14 18 18 C 1.38645 * 118.46325 * 163.03399 * 17 16 15 19 19 C 1.38258 * 120.33096 * 179.58902 * 18 17 16 20 20 F 1.35096 * 120.11510 * 180.02562 * 19 18 17 21 21 C 1.38491 * 119.76677 * 359.70536 * 19 18 17 22 22 C 1.37969 * 119.84500 * 0.66734 * 21 19 18 23 23 C 1.37844 * 121.66042 * 342.80958 * 17 16 15 24 24 C 1.46634 * 110.99685 * 296.98023 * 14 2 1 25 25 H 1.08997 * 109.47371 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47042 * 300.00108 * 1 2 3 27 27 H 1.08996 * 109.47122 * 60.00108 * 1 2 3 28 28 H 1.09001 * 109.47373 * 305.00488 * 4 2 1 29 29 H 1.09005 * 109.46827 * 64.99868 * 4 2 1 30 30 H 1.08995 * 109.46642 * 300.00128 * 5 4 2 31 31 H 1.08996 * 109.46805 * 60.00399 * 5 4 2 32 32 H 0.97003 * 119.99679 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.62866 * 45.64994 * 15 14 2 34 34 H 1.08993 * 109.79525 * 285.14892 * 15 14 2 35 35 H 1.09006 * 109.38643 * 290.32933 * 16 15 14 36 36 H 1.08999 * 109.39106 * 170.63020 * 16 15 14 37 37 H 1.08001 * 119.83532 * 359.60830 * 18 17 16 38 38 H 1.07994 * 120.07646 * 180.38149 * 21 19 18 39 39 H 1.08002 * 119.79658 * 179.72808 * 22 21 19 40 40 H 1.08995 * 109.27435 * 55.70389 * 24 14 2 41 41 H 1.09004 * 109.26472 * 296.23793 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5649 -0.6131 1.3138 6 6 4.0672 -1.3240 2.5440 7 1 3.3688 -1.8050 3.2127 8 6 5.4185 -1.3602 2.8157 9 7 6.2689 -0.7748 2.0011 10 14 6.0413 -2.2419 4.3402 11 1 6.3219 -3.6623 4.0107 12 1 7.2871 -1.5884 4.8156 13 1 5.0097 -2.1756 5.4065 14 7 2.0197 -0.6925 -1.1994 15 6 1.5478 -0.0253 -2.4231 16 6 2.3651 -0.5461 -3.6058 17 6 2.3758 -2.0532 -3.5996 18 6 2.7473 -2.7161 -4.7593 19 6 2.7788 -4.0979 -4.7941 20 9 3.1419 -4.7393 -5.9263 21 6 2.4432 -4.8220 -3.6623 22 6 2.0662 -4.1613 -2.5112 23 6 2.0322 -2.7746 -2.4764 24 6 1.6093 -2.1002 -1.1976 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6054 -0.2616 2.1370 29 1 1.7516 -1.7714 1.2057 30 1 3.9994 -1.0727 0.4261 31 1 3.8531 0.4371 1.3574 32 1 7.2196 -0.8006 2.1921 33 1 1.6851 1.0519 -2.3291 34 1 0.4925 -0.2476 -2.5812 35 1 3.3878 -0.1766 -3.5294 36 1 1.9221 -0.1910 -4.5362 37 1 3.0137 -2.1502 -5.6398 38 1 2.4720 -5.9014 -3.6821 39 1 1.8004 -4.7269 -1.6304 40 1 0.5252 -2.1588 -1.1014 41 1 2.0728 -2.6089 -0.3523 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172499463.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:48 Heat of formation + Delta-G solvation = -48.149785 kcal Electronic energy + Delta-G solvation = -21596.856501 eV Core-core repulsion = 18389.523018 eV Total energy + Delta-G solvation = -3207.333484 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.88797 -41.21072 -38.94074 -35.78777 -34.56599 -33.20061 -31.88602 -30.45446 -29.71567 -27.06153 -25.89749 -24.47192 -23.45011 -23.01737 -21.47077 -19.97133 -18.35965 -18.20096 -17.65831 -17.24648 -16.61473 -16.50044 -16.08692 -15.65781 -15.63157 -14.90406 -14.82644 -14.57073 -14.34585 -14.18718 -14.04508 -13.77962 -13.23643 -13.17867 -12.98350 -12.81447 -12.75105 -12.66904 -12.34179 -12.19613 -11.89921 -11.70791 -11.57668 -11.36748 -11.19877 -10.87294 -10.47452 -9.86588 -9.46238 -8.97426 -8.12479 -6.22755 0.16739 0.26778 1.40545 1.41573 1.52279 2.44267 2.56858 3.01779 3.20434 3.25478 3.68201 3.74148 3.94647 4.02580 4.14852 4.23824 4.32315 4.36164 4.43107 4.50897 4.55974 4.63709 4.71297 4.80191 4.88855 4.96292 5.00188 5.02842 5.04212 5.13387 5.17072 5.23261 5.31729 5.35426 5.47941 5.58937 5.62239 5.90533 5.94910 6.03829 6.26497 6.34879 6.36259 6.97733 7.45647 8.98736 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015665 B = 0.004905 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.024401 B = 5707.464164 C = 6744.784483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.086 3.914 3 H 0.072 0.928 4 C -0.095 4.095 5 C 0.040 3.960 6 C -0.540 4.540 7 H 0.056 0.944 8 C 0.001 3.999 9 N -0.932 5.932 10 Si 0.957 3.043 11 H -0.275 1.275 12 H -0.284 1.284 13 H -0.263 1.263 14 N -0.540 5.540 15 C 0.052 3.948 16 C -0.075 4.075 17 C -0.050 4.050 18 C -0.158 4.158 19 C 0.076 3.924 20 F -0.148 7.148 21 C -0.158 4.158 22 C -0.093 4.093 23 C -0.095 4.095 24 C 0.094 3.906 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.001 0.999 31 H -0.021 1.021 32 H 0.260 0.740 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.146 0.854 40 H 0.064 0.936 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.075 -2.629 -12.712 18.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.022 4.022 3 H 0.090 0.910 4 C -0.133 4.133 5 C 0.003 3.997 6 C -0.578 4.578 7 H 0.074 0.926 8 C -0.197 4.197 9 N -0.573 5.573 10 Si 0.782 3.218 11 H -0.200 1.200 12 H -0.210 1.210 13 H -0.187 1.187 14 N -0.264 5.264 15 C -0.076 4.076 16 C -0.112 4.112 17 C -0.050 4.050 18 C -0.177 4.177 19 C 0.057 3.943 20 F -0.126 7.126 21 C -0.177 4.177 22 C -0.111 4.111 23 C -0.096 4.096 24 C -0.034 4.034 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.020 0.980 31 H -0.003 1.003 32 H 0.069 0.931 33 H 0.104 0.896 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.125 0.875 37 H 0.168 0.832 38 H 0.170 0.830 39 H 0.164 0.836 40 H 0.082 0.918 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.366 -2.585 -12.763 17.959 hybrid contribution 0.203 -0.582 0.621 0.875 sum -12.163 -3.168 -12.142 17.476 Atomic orbital electron populations 1.22388 0.95716 1.02326 1.02928 1.21724 0.93408 0.97611 0.89411 0.90991 1.21596 0.96707 0.99288 0.95709 1.18808 0.91951 0.94076 0.94886 1.21796 0.92400 1.34225 1.09420 0.92576 1.25912 0.97484 0.96483 0.99802 1.70125 1.02530 1.45636 1.39025 0.85570 0.77853 0.78597 0.79760 1.20021 1.20973 1.18690 1.62361 1.59905 1.01704 1.02397 1.22192 0.97100 0.99262 0.88999 1.20630 1.01768 0.89480 0.99341 1.19639 0.96735 0.96934 0.91717 1.21232 1.03883 0.92480 1.00092 1.17794 1.02349 0.91063 0.83058 1.91462 1.89617 1.82127 1.49425 1.21238 1.02826 1.01627 0.91995 1.21144 0.98201 0.93445 0.98335 1.19922 1.00473 0.94028 0.95134 1.20935 0.98605 0.89241 0.94587 0.92283 0.91434 0.91277 0.92858 0.92863 0.98046 1.00250 0.93119 0.89551 0.93066 0.90530 0.87514 0.83219 0.82997 0.83582 0.91838 0.90689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.13 8.51 71.98 0.61 -3.52 16 2 C 0.09 2.75 2.37 44.92 0.11 2.85 16 3 H 0.07 2.41 8.10 -2.39 -0.02 2.39 16 4 C -0.10 -3.80 4.32 30.60 0.13 -3.66 16 5 C 0.04 2.12 4.86 29.85 0.15 2.26 16 6 C -0.54 -31.09 9.11 25.60 0.23 -30.85 16 7 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 8 C 0.00 0.03 5.46 84.65 0.46 0.50 16 9 N -0.93 -58.19 13.29 21.45 0.28 -57.91 16 10 Si 0.96 45.01 29.54 68.60 2.03 47.04 16 11 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 13 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 14 N -0.54 -16.99 4.16 -875.91 -3.65 -20.64 16 15 C 0.05 1.25 4.68 86.22 0.40 1.65 16 16 C -0.08 -1.72 5.94 29.82 0.18 -1.54 16 17 C -0.05 -1.31 5.77 -19.86 -0.11 -1.43 16 18 C -0.16 -3.88 9.64 22.37 0.22 -3.66 16 19 C 0.08 1.95 7.30 22.33 0.16 2.12 16 20 F -0.15 -3.81 17.27 44.97 0.78 -3.03 16 21 C -0.16 -3.81 10.03 22.27 0.22 -3.58 16 22 C -0.09 -2.37 9.64 22.33 0.22 -2.15 16 23 C -0.10 -2.69 5.79 -19.86 -0.12 -2.80 16 24 C 0.09 2.78 4.45 85.59 0.38 3.16 16 25 H 0.06 1.35 6.38 -2.39 -0.02 1.33 16 26 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 27 H 0.07 1.38 6.76 -2.39 -0.02 1.37 16 28 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.05 2.06 6.16 -2.38 -0.01 2.05 16 30 H 0.00 0.07 7.75 -2.39 -0.02 0.05 16 31 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 32 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 33 H 0.09 1.92 8.00 -2.39 -0.02 1.90 16 34 H 0.05 1.07 7.11 -2.39 -0.02 1.06 16 35 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 36 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 38 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 39 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 40 H 0.06 1.63 6.15 -2.39 -0.01 1.62 16 41 H 0.07 2.61 6.33 -2.38 -0.02 2.60 16 Total: -1.00 -67.19 327.14 3.69 -63.50 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 1.01 Total: 11.71 kcal Atomic # 6 Polarization: -43.90 SS G_CDS: 3.24 Total: -40.66 kcal Atomic # 7 Polarization: -75.19 SS G_CDS: -3.36 Total: -78.55 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.78 Total: -3.03 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -67.19 3.69 -63.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499463.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.346 kcal (2) G-P(sol) polarization free energy of solvation -67.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds