Wall clock time and date at job start Mon Mar 30 2020 02:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47108 * 2 1 4 4 C 1.53000 * 109.47394 * 120.00112 * 2 1 3 5 5 C 1.52999 * 109.47039 * 63.35371 * 4 2 1 6 6 C 1.50699 * 109.47401 * 184.76777 * 5 4 2 7 7 H 1.07998 * 119.99729 * 355.06460 * 6 5 4 8 8 C 1.37873 * 120.00160 * 175.06915 * 6 5 4 9 9 N 1.31516 * 119.99830 * 185.04483 * 8 6 5 10 10 Si 1.86800 * 120.00241 * 5.04632 * 8 6 5 11 11 H 1.48498 * 109.47301 * 94.91733 * 10 8 6 12 12 H 1.48493 * 109.47398 * 214.92533 * 10 8 6 13 13 H 1.48507 * 109.46782 * 334.92606 * 10 8 6 14 14 N 1.46899 * 109.46991 * 240.00537 * 2 1 3 15 15 C 1.47158 * 111.00170 * 54.83399 * 14 2 1 16 16 C 1.52892 * 108.52089 * 52.15131 * 15 14 2 17 17 C 1.50731 * 109.96934 * 50.34847 * 16 15 14 18 18 C 1.38697 * 118.46211 * 163.14832 * 17 16 15 19 19 C 1.37993 * 120.38728 * 179.82814 * 18 17 16 20 20 C 1.38483 * 119.79943 * 359.96326 * 19 18 17 21 21 F 1.35104 * 120.09166 * 180.11575 * 20 19 18 22 22 C 1.38237 * 119.81525 * 0.08925 * 20 19 18 23 23 C 1.37848 * 121.65085 * 343.10968 * 17 16 15 24 24 C 1.46632 * 110.99955 * 177.81278 * 14 2 1 25 25 H 1.08996 * 109.47091 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.47011 * 299.99990 * 1 2 3 27 27 H 1.09001 * 109.47532 * 59.99306 * 1 2 3 28 28 H 1.08997 * 109.47131 * 183.35091 * 4 2 1 29 29 H 1.08994 * 109.46871 * 303.35281 * 4 2 1 30 30 H 1.09005 * 109.47142 * 304.76784 * 5 4 2 31 31 H 1.09002 * 109.47280 * 64.76162 * 5 4 2 32 32 H 0.97001 * 119.99623 * 180.02562 * 9 8 6 33 33 H 1.09005 * 109.62901 * 171.85662 * 15 14 2 34 34 H 1.08998 * 109.63089 * 292.24339 * 15 14 2 35 35 H 1.08997 * 109.38881 * 170.50506 * 16 15 14 36 36 H 1.09001 * 109.38374 * 290.30733 * 16 15 14 37 37 H 1.08006 * 119.80524 * 359.80894 * 18 17 16 38 38 H 1.07996 * 120.09551 * 179.97438 * 19 18 17 39 39 H 1.07994 * 119.81927 * 179.97438 * 22 20 19 40 40 H 1.08999 * 109.30552 * 49.49428 * 24 14 2 41 41 H 1.09004 * 109.30178 * 168.87425 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6001 -2.1861 1.2077 6 6 2.0007 -2.8675 2.4907 7 1 2.5867 -2.3346 3.2250 8 6 1.6193 -4.1711 2.7272 9 7 1.8828 -4.7334 3.8865 10 14 0.7284 -5.1389 1.4008 11 1 1.7115 -5.9386 0.6268 12 1 -0.2618 -6.0478 2.0320 13 1 0.0274 -4.1994 0.4891 14 7 2.0196 -0.6924 -1.1995 15 6 1.4494 -0.1001 -2.4200 16 6 1.6936 1.4088 -2.3875 17 6 3.1451 1.6891 -2.0932 18 6 3.6426 2.9546 -2.3668 19 6 4.9645 3.2555 -2.1096 20 6 5.7989 2.2886 -1.5744 21 9 7.0936 2.5775 -1.3181 22 6 5.3034 1.0270 -1.3027 23 6 3.9752 0.7244 -1.5638 24 6 3.4844 -0.6669 -1.2598 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 3.1283 -0.6695 1.2797 29 1 1.6285 -0.2433 2.1381 30 1 0.5174 -2.2372 1.0919 31 1 2.0795 -2.6857 0.3658 32 1 1.6148 -5.6507 4.0527 33 1 1.9336 -0.5306 -3.2966 34 1 0.3785 -0.2999 -2.4582 35 1 1.4307 1.8388 -3.3539 36 1 1.0751 1.8587 -1.6108 37 1 2.9916 3.7087 -2.7839 38 1 5.3470 4.2423 -2.3248 39 1 5.9542 0.2727 -0.8858 40 1 3.8903 -0.9907 -0.3014 41 1 3.8248 -1.3475 -2.0402 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172499684.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:54 Heat of formation + Delta-G solvation = -24.036641 kcal Electronic energy + Delta-G solvation = -21937.401487 eV Core-core repulsion = 18731.113628 eV Total energy + Delta-G solvation = -3206.287859 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.96371 -40.66064 -37.72735 -34.24963 -32.77784 -32.30211 -30.51522 -29.44438 -28.66862 -25.50609 -24.59690 -23.38133 -22.57871 -21.77765 -20.34945 -18.19901 -17.28085 -16.77462 -16.70095 -15.96039 -15.68354 -15.33732 -15.04414 -14.66731 -14.20558 -13.97816 -13.74740 -13.31267 -13.25605 -12.73043 -12.56887 -12.49712 -12.13681 -11.89944 -11.84427 -11.54898 -11.32880 -11.19876 -11.09646 -10.86921 -10.73732 -10.37110 -9.84278 -9.56544 -9.40250 -9.01892 -8.97404 -8.54900 -8.40312 -8.03587 -5.95211 -3.90971 1.01864 1.07600 3.38714 3.40374 3.46154 3.53310 4.07546 4.14794 4.51852 4.55369 4.59129 4.77648 4.88841 5.04672 5.10746 5.25064 5.35037 5.40595 5.47164 5.52064 5.61392 5.70165 5.77059 5.81554 5.82680 5.91839 5.99385 6.05541 6.09332 6.17830 6.28357 6.41957 6.48645 6.61411 6.65406 6.78739 7.06303 7.28232 7.39458 7.55083 7.69267 7.94279 8.65140 9.11518 9.69343 11.18607 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022386 B = 0.004819 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.468451 B = 5808.862548 C = 6492.642557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.075 3.925 3 H 0.036 0.964 4 C -0.098 4.098 5 C -0.002 4.002 6 C -0.520 4.520 7 H 0.067 0.933 8 C 0.065 3.935 9 N -0.908 5.908 10 Si 0.879 3.121 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.260 1.260 14 N -0.510 5.510 15 C 0.049 3.951 16 C -0.118 4.118 17 C -0.087 4.087 18 C -0.092 4.092 19 C -0.159 4.159 20 C 0.093 3.907 21 F -0.143 7.143 22 C -0.147 4.147 23 C -0.073 4.073 24 C 0.082 3.918 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.018 0.982 31 H 0.022 0.978 32 H 0.260 0.740 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.137 0.863 40 H 0.104 0.896 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.663 15.267 -15.721 21.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 H 0.054 0.946 4 C -0.136 4.136 5 C -0.040 4.040 6 C -0.558 4.558 7 H 0.085 0.915 8 C -0.136 4.136 9 N -0.548 5.548 10 Si 0.706 3.294 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.184 1.184 14 N -0.231 5.231 15 C -0.080 4.080 16 C -0.156 4.156 17 C -0.088 4.088 18 C -0.110 4.110 19 C -0.178 4.178 20 C 0.074 3.926 21 F -0.121 7.121 22 C -0.167 4.167 23 C -0.075 4.075 24 C -0.046 4.046 25 H 0.091 0.909 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.036 0.964 31 H 0.040 0.960 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.155 0.845 40 H 0.122 0.878 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.506 14.592 -15.565 21.389 hybrid contribution 0.253 0.429 -0.532 0.729 sum 1.758 15.021 -16.098 22.088 Atomic orbital electron populations 1.21961 0.94778 1.03215 1.00600 1.21838 0.95418 0.95124 0.90835 0.94620 1.21576 0.99437 0.98717 0.93895 1.19496 0.96386 0.91184 0.96906 1.21285 1.33937 0.97738 1.02830 0.91534 1.25020 0.95607 0.97783 0.95150 1.69947 1.48444 1.13873 1.22547 0.86791 0.79939 0.80086 0.82565 1.20591 1.21795 1.18437 1.62644 1.05183 1.53430 1.01842 1.22273 1.01316 0.90810 0.93580 1.21163 0.92209 0.99808 1.02454 1.19643 0.96177 0.93373 0.99563 1.20924 0.94490 0.96211 0.99338 1.21025 0.94320 0.99433 1.03049 1.17637 0.78772 0.94683 1.01485 1.91492 1.34544 1.94002 1.92089 1.21135 0.96475 0.95805 1.03259 1.20443 0.92620 0.98067 0.96352 1.21335 0.88688 0.90539 1.04044 0.90859 0.92402 0.93508 0.93203 0.92427 0.96425 0.96008 0.92995 0.90772 0.89677 0.90454 0.89885 0.85349 0.85046 0.84517 0.87758 0.89106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.32 37.16 0.31 -1.84 16 2 C 0.08 1.18 1.64 -67.71 -0.11 1.06 16 3 H 0.04 0.54 5.72 -51.93 -0.30 0.24 16 4 C -0.10 -1.92 4.53 -26.73 -0.12 -2.04 16 5 C 0.00 -0.06 3.56 -27.88 -0.10 -0.16 16 6 C -0.52 -14.88 9.65 -34.44 -0.33 -15.21 16 7 H 0.07 2.06 7.99 -52.49 -0.42 1.64 16 8 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 9 N -0.91 -28.44 13.96 55.43 0.77 -27.66 16 10 Si 0.88 22.05 27.59 -169.99 -4.69 17.36 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 H -0.26 -6.25 6.39 56.52 0.36 -5.89 16 14 N -0.51 -7.51 4.07 -228.20 -0.93 -8.43 16 15 C 0.05 0.56 5.40 -3.74 -0.02 0.54 16 16 C -0.12 -1.20 5.05 -27.92 -0.14 -1.34 16 17 C -0.09 -1.01 5.05 -104.58 -0.53 -1.54 16 18 C -0.09 -0.94 9.65 -39.50 -0.38 -1.32 16 19 C -0.16 -1.72 10.03 -39.58 -0.40 -2.11 16 20 C 0.09 1.16 7.30 -39.49 -0.29 0.87 16 21 F -0.14 -1.86 17.27 2.25 0.04 -1.82 16 22 C -0.15 -1.87 9.63 -39.41 -0.38 -2.25 16 23 C -0.07 -0.93 5.25 -104.63 -0.55 -1.48 16 24 C 0.08 1.15 5.39 -5.16 -0.03 1.12 16 25 H 0.07 1.22 6.41 -51.93 -0.33 0.88 16 26 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 27 H 0.05 0.55 5.70 -51.93 -0.30 0.26 16 28 H 0.05 0.97 6.41 -51.93 -0.33 0.64 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.02 0.42 5.22 -51.93 -0.27 0.15 16 31 H 0.02 0.52 7.22 -51.93 -0.37 0.14 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 33 H 0.07 0.80 8.05 -51.93 -0.42 0.39 16 34 H 0.08 0.94 6.72 -51.93 -0.35 0.59 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.87 6.05 -51.93 -0.31 0.55 16 37 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 38 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.14 1.61 8.06 -52.49 -0.42 1.18 16 40 H 0.10 1.62 5.93 -51.93 -0.31 1.31 16 41 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 315.88 15.07 4.76 4.76 Total: -1.00 -31.29 315.88 -9.06 -40.35 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.85 Total: -0.67 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -3.17 Total: -23.89 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: -0.15 Total: -36.10 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.69 Total: 17.36 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.29 -9.06 -40.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499684.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.309 kcal (2) G-P(sol) polarization free energy of solvation -31.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds