Wall clock time and date at job start Mon Mar 30 2020 02:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47108 * 2 1 4 4 C 1.53000 * 109.47394 * 120.00112 * 2 1 3 5 5 C 1.52999 * 109.47039 * 63.35371 * 4 2 1 6 6 C 1.50699 * 109.47401 * 184.76777 * 5 4 2 7 7 H 1.07998 * 119.99729 * 355.06460 * 6 5 4 8 8 C 1.37873 * 120.00160 * 175.06915 * 6 5 4 9 9 N 1.31516 * 119.99830 * 185.04483 * 8 6 5 10 10 Si 1.86800 * 120.00241 * 5.04632 * 8 6 5 11 11 H 1.48498 * 109.47301 * 94.91733 * 10 8 6 12 12 H 1.48493 * 109.47398 * 214.92533 * 10 8 6 13 13 H 1.48507 * 109.46782 * 334.92606 * 10 8 6 14 14 N 1.46899 * 109.46991 * 240.00537 * 2 1 3 15 15 C 1.47158 * 111.00170 * 54.83399 * 14 2 1 16 16 C 1.52892 * 108.52089 * 52.15131 * 15 14 2 17 17 C 1.50731 * 109.96934 * 50.34847 * 16 15 14 18 18 C 1.38697 * 118.46211 * 163.14832 * 17 16 15 19 19 C 1.37993 * 120.38728 * 179.82814 * 18 17 16 20 20 C 1.38483 * 119.79943 * 359.96326 * 19 18 17 21 21 F 1.35104 * 120.09166 * 180.11575 * 20 19 18 22 22 C 1.38237 * 119.81525 * 0.08925 * 20 19 18 23 23 C 1.37848 * 121.65085 * 343.10968 * 17 16 15 24 24 C 1.46632 * 110.99955 * 177.81278 * 14 2 1 25 25 H 1.08996 * 109.47091 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.47011 * 299.99990 * 1 2 3 27 27 H 1.09001 * 109.47532 * 59.99306 * 1 2 3 28 28 H 1.08997 * 109.47131 * 183.35091 * 4 2 1 29 29 H 1.08994 * 109.46871 * 303.35281 * 4 2 1 30 30 H 1.09005 * 109.47142 * 304.76784 * 5 4 2 31 31 H 1.09002 * 109.47280 * 64.76162 * 5 4 2 32 32 H 0.97001 * 119.99623 * 180.02562 * 9 8 6 33 33 H 1.09005 * 109.62901 * 171.85662 * 15 14 2 34 34 H 1.08998 * 109.63089 * 292.24339 * 15 14 2 35 35 H 1.08997 * 109.38881 * 170.50506 * 16 15 14 36 36 H 1.09001 * 109.38374 * 290.30733 * 16 15 14 37 37 H 1.08006 * 119.80524 * 359.80894 * 18 17 16 38 38 H 1.07996 * 120.09551 * 179.97438 * 19 18 17 39 39 H 1.07994 * 119.81927 * 179.97438 * 22 20 19 40 40 H 1.08999 * 109.30552 * 49.49428 * 24 14 2 41 41 H 1.09004 * 109.30178 * 168.87425 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6001 -2.1861 1.2077 6 6 2.0007 -2.8675 2.4907 7 1 2.5867 -2.3346 3.2250 8 6 1.6193 -4.1711 2.7272 9 7 1.8828 -4.7334 3.8865 10 14 0.7284 -5.1389 1.4008 11 1 1.7115 -5.9386 0.6268 12 1 -0.2618 -6.0478 2.0320 13 1 0.0274 -4.1994 0.4891 14 7 2.0196 -0.6924 -1.1995 15 6 1.4494 -0.1001 -2.4200 16 6 1.6936 1.4088 -2.3875 17 6 3.1451 1.6891 -2.0932 18 6 3.6426 2.9546 -2.3668 19 6 4.9645 3.2555 -2.1096 20 6 5.7989 2.2886 -1.5744 21 9 7.0936 2.5775 -1.3181 22 6 5.3034 1.0270 -1.3027 23 6 3.9752 0.7244 -1.5638 24 6 3.4844 -0.6669 -1.2598 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 3.1283 -0.6695 1.2797 29 1 1.6285 -0.2433 2.1381 30 1 0.5174 -2.2372 1.0919 31 1 2.0795 -2.6857 0.3658 32 1 1.6148 -5.6507 4.0527 33 1 1.9336 -0.5306 -3.2966 34 1 0.3785 -0.2999 -2.4582 35 1 1.4307 1.8388 -3.3539 36 1 1.0751 1.8587 -1.6108 37 1 2.9916 3.7087 -2.7839 38 1 5.3470 4.2423 -2.3248 39 1 5.9542 0.2727 -0.8858 40 1 3.8903 -0.9907 -0.3014 41 1 3.8248 -1.3475 -2.0402 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172499684.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:54 Heat of formation + Delta-G solvation = -42.018419 kcal Electronic energy + Delta-G solvation = -21938.181235 eV Core-core repulsion = 18731.113628 eV Total energy + Delta-G solvation = -3207.067608 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.92787 -41.63224 -38.77765 -35.82219 -34.22489 -33.66268 -31.80759 -30.56475 -29.92483 -27.10350 -25.62398 -24.53973 -23.46589 -23.25856 -21.66864 -19.41170 -18.92685 -18.14822 -17.73726 -16.99596 -16.69902 -16.54015 -16.14041 -16.00734 -15.63952 -15.11194 -14.72367 -14.68770 -14.48915 -14.21878 -13.95086 -13.60360 -13.53690 -13.10865 -12.98934 -12.83075 -12.58091 -12.45824 -12.23388 -12.18512 -11.89286 -11.82835 -11.66656 -11.38353 -11.12017 -10.97163 -10.65253 -9.89252 -9.44282 -9.12400 -8.24294 -6.25811 0.12597 0.20479 1.40513 1.40679 1.56284 2.42118 2.52808 3.03097 3.12758 3.23579 3.67284 3.72327 3.92346 4.02438 4.09897 4.15491 4.23277 4.26087 4.47421 4.53298 4.57886 4.66956 4.82003 4.85377 4.88773 4.92061 4.94764 5.01092 5.05694 5.11230 5.13869 5.19852 5.27627 5.30666 5.47505 5.55707 5.64678 5.76607 5.80733 5.91965 6.22189 6.28893 6.37529 6.83417 7.38455 8.93085 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022386 B = 0.004819 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.468451 B = 5808.862548 C = 6492.642557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.089 3.911 3 H 0.046 0.954 4 C -0.095 4.095 5 C 0.011 3.989 6 C -0.531 4.531 7 H 0.023 0.977 8 C 0.002 3.998 9 N -0.957 5.957 10 Si 0.951 3.049 11 H -0.272 1.272 12 H -0.287 1.287 13 H -0.239 1.239 14 N -0.529 5.529 15 C 0.047 3.953 16 C -0.112 4.112 17 C -0.091 4.091 18 C -0.085 4.085 19 C -0.155 4.155 20 C 0.074 3.926 21 F -0.151 7.151 22 C -0.163 4.163 23 C -0.086 4.086 24 C 0.086 3.914 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.039 0.961 29 H 0.045 0.955 30 H 0.021 0.979 31 H 0.023 0.977 32 H 0.264 0.736 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.163 0.837 38 H 0.155 0.845 39 H 0.131 0.869 40 H 0.076 0.924 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.148 16.897 -18.888 25.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.019 4.019 3 H 0.064 0.936 4 C -0.133 4.133 5 C -0.027 4.027 6 C -0.569 4.569 7 H 0.041 0.959 8 C -0.194 4.194 9 N -0.599 5.599 10 Si 0.775 3.225 11 H -0.198 1.198 12 H -0.213 1.213 13 H -0.162 1.162 14 N -0.251 5.251 15 C -0.081 4.081 16 C -0.150 4.150 17 C -0.092 4.092 18 C -0.103 4.103 19 C -0.174 4.174 20 C 0.055 3.945 21 F -0.130 7.130 22 C -0.182 4.182 23 C -0.088 4.088 24 C -0.043 4.043 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.039 0.961 31 H 0.041 0.959 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.114 0.886 35 H 0.125 0.875 36 H 0.104 0.896 37 H 0.180 0.820 38 H 0.173 0.827 39 H 0.149 0.851 40 H 0.094 0.906 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.300 16.244 -18.745 24.806 hybrid contribution 0.901 -0.033 0.522 1.042 sum 0.601 16.211 -18.223 24.397 Atomic orbital electron populations 1.21941 0.93540 1.02375 1.02404 1.21599 0.96172 0.94817 0.89346 0.93612 1.21459 0.98937 0.96760 0.96111 1.19333 0.96275 0.93136 0.93920 1.21687 1.33116 0.98084 1.04038 0.95886 1.26014 0.96731 0.98998 0.97613 1.70106 1.50249 1.14500 1.25028 0.85641 0.78788 0.78597 0.79500 1.19772 1.21329 1.16181 1.62595 1.05452 1.54290 1.02725 1.22380 1.01706 0.91859 0.92109 1.21169 0.91011 0.98696 1.04148 1.19919 0.96870 0.93518 0.98857 1.21283 0.94521 0.96285 0.98231 1.21352 0.94411 0.99907 1.01725 1.17873 0.78837 0.95189 1.02650 1.91465 1.35193 1.94038 1.92320 1.21194 0.96842 0.96234 1.03925 1.20345 0.92855 0.97902 0.97740 1.21178 0.88616 0.91693 1.02781 0.92903 0.92237 0.90163 0.94206 0.93631 0.96097 0.95885 0.92770 0.89995 0.88643 0.87467 0.89570 0.81983 0.82748 0.85109 0.90563 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 8.32 71.98 0.60 -3.23 16 2 C 0.09 2.62 1.64 44.91 0.07 2.70 16 3 H 0.05 1.29 5.72 -2.38 -0.01 1.27 16 4 C -0.09 -3.76 4.53 30.59 0.14 -3.62 16 5 C 0.01 0.51 3.56 29.85 0.11 0.61 16 6 C -0.53 -31.51 9.65 25.60 0.25 -31.26 16 7 H 0.02 1.51 7.99 -2.91 -0.02 1.48 16 8 C 0.00 0.13 5.47 84.65 0.46 0.59 16 9 N -0.96 -61.81 13.96 21.45 0.30 -61.51 16 10 Si 0.95 45.56 27.59 68.60 1.89 47.46 16 11 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 13 H -0.24 -10.54 6.39 99.48 0.64 -9.90 16 14 N -0.53 -14.61 4.07 -875.91 -3.56 -18.17 16 15 C 0.05 0.92 5.40 86.22 0.47 1.38 16 16 C -0.11 -1.79 5.05 29.82 0.15 -1.64 16 17 C -0.09 -1.83 5.05 -19.84 -0.10 -1.93 16 18 C -0.09 -1.42 9.65 22.32 0.22 -1.21 16 19 C -0.16 -2.93 10.03 22.27 0.22 -2.70 16 20 C 0.07 1.78 7.30 22.33 0.16 1.94 16 21 F -0.15 -3.93 17.27 44.97 0.78 -3.15 16 22 C -0.16 -4.15 9.63 22.38 0.22 -3.93 16 23 C -0.09 -2.13 5.25 -19.87 -0.10 -2.23 16 24 C 0.09 2.36 5.39 85.58 0.46 2.82 16 25 H 0.05 1.62 6.41 -2.39 -0.02 1.61 16 26 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.08 1.57 5.70 -2.39 -0.01 1.56 16 28 H 0.04 1.63 6.41 -2.39 -0.02 1.61 16 29 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.02 0.98 5.22 -2.38 -0.01 0.96 16 31 H 0.02 1.08 7.22 -2.39 -0.02 1.06 16 32 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 33 H 0.08 1.49 8.05 -2.38 -0.02 1.47 16 34 H 0.10 1.69 6.72 -2.39 -0.02 1.67 16 35 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.09 1.38 6.05 -2.39 -0.01 1.36 16 37 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 38 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 39 H 0.13 3.30 8.06 -2.91 -0.02 3.28 16 40 H 0.08 2.49 5.93 -2.39 -0.01 2.47 16 41 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -69.87 315.88 3.68 -66.19 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 0.96 Total: 10.89 kcal Atomic # 6 Polarization: -45.02 SS G_CDS: 3.32 Total: -41.70 kcal Atomic # 7 Polarization: -76.41 SS G_CDS: -3.26 Total: -79.68 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.78 Total: -3.15 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.89 Total: 47.46 kcal Total: -69.87 3.68 -66.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499684.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.171 kcal (2) G-P(sol) polarization free energy of solvation -69.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds