Wall clock time and date at job start Mon Mar 30 2020 01:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.19590 * 2 1 4 4 C 1.53602 * 109.19889 * 240.71909 * 2 1 3 5 5 C 1.51477 * 107.48786 * 158.01994 * 4 2 1 6 6 N 1.30296 * 127.59682 * 246.13811 * 5 4 2 7 7 N 1.40358 * 108.08286 * 178.21902 * 6 5 4 8 8 H 0.97002 * 126.00731 * 180.29503 * 7 6 5 9 9 C 1.35313 * 107.98632 * 0.27871 * 7 6 5 10 10 C 1.34288 * 107.37460 * 0.17844 * 9 7 6 11 11 C 1.51931 * 128.42357 * 179.23106 * 10 9 7 12 12 N 1.47330 * 106.76115 * 118.82039 * 11 10 9 13 13 C 1.34781 * 119.47542 * 258.10040 * 12 11 10 14 14 O 1.21276 * 119.99612 * 180.02562 * 13 12 11 15 15 C 1.50693 * 119.99889 * 0.02562 * 13 12 11 16 16 C 1.53003 * 109.47071 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.47476 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99566 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00185 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99968 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99938 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47384 * 89.99547 * 21 19 17 23 23 H 1.48497 * 109.47212 * 210.00092 * 21 19 17 24 24 H 1.48509 * 109.47267 * 329.99825 * 21 19 17 25 25 C 1.45000 * 121.04489 * 78.12605 * 12 11 10 26 26 H 1.09002 * 109.47153 * 300.66348 * 1 2 3 27 27 H 1.09001 * 109.46832 * 180.66539 * 1 2 3 28 28 H 1.09004 * 109.47261 * 60.66520 * 1 2 3 29 29 H 1.09007 * 109.84986 * 277.51629 * 4 2 1 30 30 H 1.08996 * 109.85760 * 38.51661 * 4 2 1 31 31 H 1.07998 * 126.31680 * 180.20338 * 9 7 6 32 32 H 1.08998 * 109.98715 * 359.50711 * 11 10 9 33 33 H 1.08997 * 110.06709 * 238.17864 * 11 10 9 34 34 H 1.09000 * 109.47524 * 299.99352 * 15 13 12 35 35 H 1.09000 * 109.47662 * 60.00443 * 15 13 12 36 36 H 1.08998 * 109.47196 * 300.00062 * 16 15 13 37 37 H 1.09006 * 109.46850 * 59.99572 * 16 15 13 38 38 H 0.97007 * 119.99559 * 180.02562 * 20 19 17 39 39 H 1.08992 * 108.37008 * 169.08101 * 25 12 11 40 40 H 1.09005 * 108.36854 * 51.95653 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8884 1.0294 0.0000 4 6 2.0351 -0.7095 -1.2652 5 6 3.4500 -0.2326 -1.5204 6 7 3.8799 0.4808 -2.5224 7 7 5.2492 0.7217 -2.3299 8 1 5.8271 1.2309 -2.9196 9 6 5.6215 0.1190 -1.1770 10 6 4.5326 -0.4795 -0.6676 11 6 4.4155 -1.3031 0.6037 12 7 3.4565 -0.6035 1.4764 13 6 3.9143 0.1382 2.5044 14 8 3.1332 0.7177 3.2290 15 6 5.3965 0.2474 2.7535 16 6 5.6447 1.1412 3.9703 17 6 7.1269 1.2499 4.2198 18 1 7.8223 0.7336 3.5747 19 6 7.5952 2.0095 5.2709 20 7 8.8887 2.1048 5.4883 21 14 6.3922 2.9031 6.3861 22 1 6.0154 2.0185 7.5178 23 1 7.0287 4.1370 6.9130 24 1 5.1761 3.2644 5.6142 25 6 2.0281 -0.7008 1.2470 26 1 -0.3633 0.5241 0.8840 27 1 -0.3633 -1.0276 0.0119 28 1 -0.3634 0.5035 -0.8959 29 1 2.0302 -1.7886 -1.1115 30 1 1.3993 -0.4527 -2.1125 31 1 6.6116 0.1195 -0.7457 32 1 5.3863 -1.3701 1.0949 33 1 4.0468 -2.3018 0.3697 34 1 5.8075 -0.7445 2.9411 35 1 5.8809 0.6821 1.8791 36 1 5.2338 2.1331 3.7823 37 1 5.1602 0.7069 4.8449 38 1 9.2180 2.6389 6.2281 39 1 1.5123 -0.2769 2.1085 40 1 1.7624 -1.7557 1.1776 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177675877.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:40 Heat of formation + Delta-G solvation = 2.620207 kcal Electronic energy + Delta-G solvation = -21932.364062 eV Core-core repulsion = 18747.152092 eV Total energy + Delta-G solvation = -3185.211970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.42624 -40.83225 -37.99276 -35.68386 -35.42707 -33.29884 -32.88927 -31.56650 -28.81872 -28.06576 -27.17403 -26.06508 -23.13317 -22.02211 -21.62095 -20.36774 -19.93798 -19.23289 -18.58734 -17.67467 -17.04997 -16.58046 -16.22489 -15.69999 -15.56105 -15.35627 -14.94761 -14.78929 -14.38297 -14.09058 -13.94484 -13.86696 -13.42495 -13.18631 -13.05586 -12.88239 -12.58982 -12.41283 -12.13128 -11.98144 -11.96530 -11.77441 -11.68765 -11.41002 -11.34417 -10.76427 -10.67703 -10.33751 -9.72651 -9.41953 -8.30300 -6.31832 0.97319 1.32362 1.34862 1.49743 1.59994 1.74909 2.02444 2.31859 2.35626 3.05899 3.58792 3.73029 3.87652 3.95174 4.02098 4.22724 4.34257 4.38240 4.49292 4.51284 4.53398 4.62423 4.71262 4.80395 4.86670 4.93033 5.03883 5.05924 5.12086 5.18182 5.29644 5.35694 5.41085 5.46368 5.62442 5.67655 5.78901 6.25473 6.41861 6.46997 6.74133 6.74712 7.30022 7.33624 8.85041 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020598 B = 0.004975 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.035903 B = 5627.181537 C = 6516.059735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 H 0.035 0.965 4 C -0.028 4.028 5 C 0.080 3.920 6 N -0.327 5.327 7 N -0.483 5.483 8 H 0.450 0.550 9 C 0.083 3.917 10 C -0.279 4.279 11 C 0.185 3.815 12 N -0.600 5.600 13 C 0.510 3.490 14 O -0.590 6.590 15 C -0.112 4.112 16 C 0.005 3.995 17 C -0.523 4.523 18 H 0.056 0.944 19 C 0.017 3.983 20 N -0.942 5.942 21 Si 0.931 3.069 22 H -0.267 1.267 23 H -0.279 1.279 24 H -0.267 1.267 25 C 0.109 3.891 26 H 0.049 0.951 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.111 0.889 30 H 0.087 0.913 31 H 0.206 0.794 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.002 0.998 37 H 0.007 0.993 38 H 0.266 0.734 39 H 0.064 0.936 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.705 -10.021 -17.161 23.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.111 4.111 3 H 0.054 0.946 4 C -0.067 4.067 5 C -0.089 4.089 6 N -0.150 5.150 7 N -0.192 5.192 8 H 0.296 0.704 9 C -0.065 4.065 10 C -0.291 4.291 11 C 0.062 3.938 12 N -0.331 5.331 13 C 0.300 3.700 14 O -0.470 6.470 15 C -0.151 4.151 16 C -0.033 4.033 17 C -0.561 4.561 18 H 0.075 0.925 19 C -0.180 4.180 20 N -0.582 5.582 21 Si 0.756 3.244 22 H -0.193 1.193 23 H -0.205 1.205 24 H -0.191 1.191 25 C -0.014 4.014 26 H 0.068 0.932 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.129 0.871 30 H 0.106 0.894 31 H 0.222 0.778 32 H 0.124 0.876 33 H 0.133 0.867 34 H 0.126 0.874 35 H 0.116 0.884 36 H 0.020 0.980 37 H 0.026 0.974 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.295 -9.084 -17.770 23.980 hybrid contribution 0.636 0.929 1.106 1.578 sum -12.659 -8.155 -16.665 22.460 Atomic orbital electron populations 1.21752 0.92049 1.03589 1.02166 1.21151 0.97413 0.98511 0.94052 0.94628 1.20508 0.87361 1.01270 0.97549 1.22805 0.97976 0.96209 0.91904 1.77026 0.91365 1.22107 1.24461 1.46461 1.07709 1.44498 1.20504 0.70438 1.22669 1.01302 0.94266 0.88217 1.20674 0.93349 1.12459 1.02626 1.20557 0.93968 0.94106 0.85129 1.47869 1.07483 1.48926 1.28844 1.21348 0.91954 0.76965 0.79689 1.90611 1.59595 1.47581 1.49251 1.21495 0.90455 1.02818 1.00341 1.19228 0.94597 0.95058 0.94408 1.21402 0.91712 1.29637 1.13305 0.92542 1.25708 0.96326 0.97084 0.98913 1.70008 1.14129 1.42302 1.31808 0.85939 0.79828 0.78848 0.79756 1.19254 1.20455 1.19135 1.20924 0.80528 1.02081 0.97871 0.93185 0.89906 0.91511 0.87098 0.89415 0.77771 0.87643 0.86738 0.87388 0.88423 0.97990 0.97438 0.92451 0.91713 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.02 71.98 0.65 -1.46 16 2 C -0.09 -1.84 2.63 -11.09 -0.03 -1.87 16 3 H 0.04 1.00 7.89 -2.39 -0.02 0.98 16 4 C -0.03 -0.48 5.34 30.30 0.16 -0.32 16 5 C 0.08 1.82 6.40 43.46 0.28 2.09 16 6 N -0.33 -8.23 12.69 -46.93 -0.60 -8.82 16 7 N -0.48 -9.71 7.38 -57.98 -0.43 -10.14 16 8 H 0.45 6.31 8.96 -213.15 -1.91 4.40 16 9 C 0.08 1.61 11.97 83.25 1.00 2.61 16 10 C -0.28 -5.97 5.62 -19.94 -0.11 -6.08 16 11 C 0.18 3.55 6.03 85.87 0.52 4.07 16 12 N -0.60 -15.86 2.66 -828.42 -2.20 -18.07 16 13 C 0.51 18.64 7.65 87.65 0.67 19.31 16 14 O -0.59 -26.86 15.23 -3.02 -0.05 -26.90 16 15 C -0.11 -4.18 4.00 29.85 0.12 -4.06 16 16 C 0.01 0.25 3.33 29.85 0.10 0.35 16 17 C -0.52 -29.59 9.66 25.60 0.25 -29.35 16 18 H 0.06 3.30 7.99 -2.91 -0.02 3.28 16 19 C 0.02 1.03 5.47 84.66 0.46 1.49 16 20 N -0.94 -58.22 13.96 21.45 0.30 -57.92 16 21 Si 0.93 46.89 27.47 68.60 1.88 48.78 16 22 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 23 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 24 H -0.27 -13.58 6.54 99.48 0.65 -12.93 16 25 C 0.11 2.48 4.90 86.16 0.42 2.90 16 26 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 0.93 8.11 -2.38 -0.02 0.91 16 29 H 0.11 1.33 7.92 -2.38 -0.02 1.32 16 30 H 0.09 1.38 7.95 -2.39 -0.02 1.36 16 31 H 0.21 2.83 8.06 -2.91 -0.02 2.80 16 32 H 0.11 1.89 6.04 -2.39 -0.01 1.87 16 33 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.11 3.53 7.47 -2.39 -0.02 3.51 16 35 H 0.10 3.35 8.07 -2.39 -0.02 3.33 16 36 H 0.00 0.09 7.16 -2.39 -0.02 0.07 16 37 H 0.01 0.38 7.53 -2.38 -0.02 0.36 16 38 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 39 H 0.06 1.84 6.73 -2.39 -0.02 1.83 16 40 H 0.10 1.54 8.01 -2.38 -0.02 1.52 16 Total: -1.00 -78.41 322.77 2.47 -75.94 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -0.92 Total: 7.44 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: 4.48 Total: -10.31 kcal Atomic # 7 Polarization: -92.01 SS G_CDS: -2.93 Total: -94.94 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.05 Total: -26.90 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 1.88 Total: 48.78 kcal Total: -78.41 2.47 -75.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177675877.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.559 kcal (2) G-P(sol) polarization free energy of solvation -78.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds