Wall clock time and date at job start Mon Mar 30 2020 02:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47243 * 2 1 4 4 C 1.53004 * 109.46798 * 240.00265 * 2 1 3 5 5 C 1.50701 * 109.47211 * 65.00508 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47266 * 60.00049 * 9 7 5 11 11 H 1.48504 * 109.46970 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47383 * 299.99456 * 9 7 5 13 13 C 1.52997 * 109.46903 * 120.00662 * 2 1 3 14 14 N 1.46908 * 109.46699 * 294.99532 * 13 2 1 15 15 C 1.47474 * 111.00292 * 265.97330 * 14 13 2 16 16 C 1.53510 * 87.93267 * 221.30061 * 15 14 13 17 17 C 1.47484 * 110.99696 * 170.00182 * 14 13 2 18 18 H 1.09002 * 113.47335 * 23.93754 * 17 14 13 19 19 C 1.50697 * 113.47588 * 253.47331 * 17 14 13 20 20 C 1.38243 * 119.97573 * 319.72112 * 19 17 14 21 21 C 1.38200 * 120.02742 * 179.76651 * 20 19 17 22 22 C 1.38455 * 119.97103 * 0.51564 * 21 20 19 23 23 F 1.35107 * 120.02590 * 179.76696 * 22 21 20 24 24 C 1.38457 * 119.94970 * 359.74026 * 22 21 20 25 25 C 1.38199 * 119.97771 * 0.02562 * 24 22 21 26 26 H 1.09000 * 109.46939 * 59.99651 * 1 2 3 27 27 H 1.08997 * 109.47262 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47425 * 299.99608 * 1 2 3 29 29 H 1.09000 * 109.47211 * 304.99535 * 4 2 1 30 30 H 1.09007 * 109.46376 * 185.00077 * 4 2 1 31 31 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47572 * 54.99886 * 13 2 1 33 33 H 1.09000 * 109.47136 * 175.00019 * 13 2 1 34 34 H 1.09003 * 113.47471 * 336.06773 * 15 14 13 35 35 H 1.08993 * 113.47782 * 106.53128 * 15 14 13 36 36 H 1.08998 * 114.16634 * 272.37424 * 16 15 14 37 37 H 1.09002 * 114.17012 * 139.67157 * 16 15 14 38 38 H 1.08004 * 119.98589 * 0.02699 * 20 19 17 39 39 H 1.07997 * 120.01599 * 180.25599 * 21 20 19 40 40 H 1.08001 * 120.01210 * 180.02562 * 24 22 21 41 41 H 1.07997 * 119.98746 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6414 0.0572 -2.4766 6 1 1.0801 0.9744 -2.3756 7 6 1.9879 -0.4048 -3.7286 8 7 2.6711 -1.5218 -3.8515 9 14 1.4871 0.5560 -5.2502 10 1 2.0789 1.9169 -5.1935 11 1 1.9779 -0.1465 -6.4630 12 1 0.0068 0.6618 -5.3040 13 6 2.0400 -0.7214 1.2491 14 7 1.6514 0.0373 2.4456 15 6 2.7283 0.9543 2.8629 16 6 2.4289 0.5561 4.3149 17 6 1.9134 -0.7390 3.6719 18 1 2.6847 -1.4992 3.5480 19 6 0.6639 -1.2757 4.3212 20 6 -0.4733 -0.4921 4.3834 21 6 -1.6213 -0.9850 4.9743 22 6 -1.6289 -2.2601 5.5136 23 9 -2.7491 -2.7413 6.0958 24 6 -0.4877 -3.0420 5.4555 25 6 0.6576 -2.5489 4.8598 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 1.6054 -1.7198 -1.2952 30 1 3.1264 -0.7994 -1.2056 31 1 2.9146 -1.8469 -4.7323 32 1 1.6054 -1.7199 1.2950 33 1 3.1263 -0.7996 1.2055 34 1 3.7171 0.6460 2.5232 35 1 2.5152 2.0012 2.6470 36 1 1.6543 1.1567 4.7917 37 1 3.3166 0.4245 4.9337 38 1 -0.4659 0.5041 3.9663 39 1 -2.5108 -0.3742 5.0191 40 1 -0.4926 -4.0370 5.8755 41 1 1.5477 -3.1588 4.8140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184143630.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:22 Heat of formation + Delta-G solvation = -2.383344 kcal Electronic energy + Delta-G solvation = -21058.796064 eV Core-core repulsion = 17853.447162 eV Total energy + Delta-G solvation = -3205.348902 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.96655 -40.59224 -38.41550 -35.27091 -32.34501 -31.24272 -30.98973 -29.11392 -26.69044 -25.53837 -24.66836 -23.17897 -22.42366 -21.87140 -19.55593 -18.98120 -17.77994 -16.67549 -16.29435 -16.16261 -15.66986 -15.35508 -14.79188 -14.56938 -14.38754 -13.75357 -13.61072 -13.39191 -13.19844 -12.83898 -12.53009 -12.30195 -12.07399 -11.75507 -11.48556 -11.21289 -11.11586 -11.04669 -10.83017 -10.72596 -10.49872 -10.28411 -10.24701 -9.63686 -9.17924 -9.12353 -8.99080 -8.73113 -8.51229 -8.31778 -5.96762 -3.97846 1.03562 1.17215 3.35021 3.39265 3.41811 3.44456 4.15697 4.18044 4.44026 4.49062 4.64368 4.75219 4.79888 4.95807 5.20681 5.25962 5.30496 5.37753 5.39925 5.51655 5.64742 5.79905 5.82689 5.85172 5.92663 6.02438 6.07115 6.15307 6.20988 6.23684 6.44460 6.47972 6.64920 6.77234 6.82436 7.04842 7.20004 7.22561 7.36244 7.69642 7.86153 8.03389 8.47720 9.08282 9.65494 11.14792 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022940 B = 0.003594 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.291678 B = 7788.007816 C = 8331.928230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.073 4.073 3 H 0.055 0.945 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.025 3.975 14 N -0.457 5.457 15 C -0.002 4.002 16 C -0.137 4.137 17 C 0.060 3.940 18 H 0.084 0.916 19 C -0.073 4.073 20 C -0.059 4.059 21 C -0.157 4.157 22 C 0.091 3.909 23 F -0.145 7.145 24 C -0.157 4.157 25 C -0.087 4.087 26 H 0.053 0.947 27 H 0.037 0.963 28 H 0.041 0.959 29 H 0.015 0.985 30 H 0.011 0.989 31 H 0.260 0.740 32 H 0.066 0.934 33 H 0.041 0.959 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.139 0.861 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.697 0.762 20.710 20.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.092 4.092 3 H 0.073 0.927 4 C -0.011 4.011 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.103 4.103 14 N -0.179 5.179 15 C -0.131 4.131 16 C -0.175 4.175 17 C -0.049 4.049 18 H 0.102 0.898 19 C -0.073 4.073 20 C -0.077 4.077 21 C -0.176 4.176 22 C 0.071 3.929 23 F -0.123 7.123 24 C -0.176 4.176 25 C -0.105 4.105 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.033 0.967 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.093 0.907 38 H 0.157 0.843 39 H 0.151 0.849 40 H 0.150 0.850 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.328 0.862 20.392 20.680 hybrid contribution 0.375 -0.185 -0.909 1.000 sum -2.953 0.677 19.484 19.718 Atomic orbital electron populations 1.21575 0.95869 1.00345 1.00147 1.21073 0.95791 0.98976 0.93392 0.92699 1.19132 0.95817 0.95532 0.90571 1.21197 1.34675 1.08218 0.90973 0.92635 1.25013 0.95342 0.95078 0.99069 1.69952 1.39161 1.21194 1.23449 0.86697 0.78948 0.80086 0.82501 1.20305 1.21371 1.20260 1.22890 0.98243 0.97677 0.91442 1.68939 1.38030 1.10478 1.00477 1.23780 0.94936 1.00047 0.94323 1.23267 1.01351 0.96210 0.96626 1.22302 0.93705 0.95975 0.92923 0.89822 1.19684 0.95469 0.93809 0.98369 1.20907 0.90858 1.00576 0.95353 1.21176 1.00218 0.94778 1.01421 1.17750 0.83063 0.93747 0.98300 1.91483 1.50343 1.88373 1.82140 1.21054 0.92482 1.00621 1.03460 1.20915 0.97622 0.95078 0.96908 0.92766 0.94408 0.94004 0.96699 0.97033 0.93058 0.91531 0.94068 0.91188 0.89655 0.88910 0.90737 0.84298 0.84916 0.85016 0.85270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.89 37.16 0.33 -2.08 16 2 C -0.07 -1.51 2.55 -90.62 -0.23 -1.74 16 3 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.44 8.41 -34.44 -0.29 -14.73 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 9 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.03 0.43 4.21 -3.82 -0.02 0.42 16 14 N -0.46 -6.36 5.08 -237.93 -1.21 -7.57 16 15 C 0.00 -0.02 7.71 -7.55 -0.06 -0.08 16 16 C -0.14 -1.31 7.91 -26.20 -0.21 -1.52 16 17 C 0.06 0.69 3.25 -72.59 -0.24 0.45 16 18 H 0.08 0.92 7.85 -51.93 -0.41 0.51 16 19 C -0.07 -0.83 5.39 -104.62 -0.56 -1.40 16 20 C -0.06 -0.67 8.86 -39.59 -0.35 -1.02 16 21 C -0.16 -1.75 10.03 -39.52 -0.40 -2.15 16 22 C 0.09 1.06 7.30 -39.42 -0.29 0.77 16 23 F -0.14 -1.77 17.27 2.25 0.04 -1.73 16 24 C -0.16 -1.67 10.03 -39.51 -0.40 -2.06 16 25 C -0.09 -0.91 9.70 -39.59 -0.38 -1.29 16 26 H 0.05 1.15 6.95 -51.93 -0.36 0.78 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 29 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 32 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 33 H 0.04 0.69 7.30 -51.93 -0.38 0.31 16 34 H 0.07 0.82 7.42 -51.93 -0.39 0.44 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.09 0.85 7.62 -51.93 -0.40 0.45 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.14 1.56 7.81 -52.48 -0.41 1.15 16 39 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 40 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.13 1.10 8.05 -52.49 -0.42 0.68 16 LS Contribution 339.78 15.07 5.12 5.12 Total: -1.00 -30.25 339.78 -10.11 -40.36 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -6.47 Total: -2.25 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: -3.31 Total: -24.36 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: -0.47 Total: -33.93 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.25 -10.11 -40.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184143630.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.981 kcal (2) G-P(sol) polarization free energy of solvation -30.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds