Wall clock time and date at job start Mon Mar 30 2020 02:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47243 * 2 1 4 4 C 1.53004 * 109.46798 * 240.00265 * 2 1 3 5 5 C 1.50701 * 109.47211 * 65.00508 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47266 * 60.00049 * 9 7 5 11 11 H 1.48504 * 109.46970 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47383 * 299.99456 * 9 7 5 13 13 C 1.52997 * 109.46903 * 120.00662 * 2 1 3 14 14 N 1.46908 * 109.46699 * 294.99532 * 13 2 1 15 15 C 1.47474 * 111.00292 * 265.97330 * 14 13 2 16 16 C 1.53510 * 87.93267 * 221.30061 * 15 14 13 17 17 C 1.47484 * 110.99696 * 170.00182 * 14 13 2 18 18 H 1.09002 * 113.47335 * 23.93754 * 17 14 13 19 19 C 1.50697 * 113.47588 * 253.47331 * 17 14 13 20 20 C 1.38243 * 119.97573 * 319.72112 * 19 17 14 21 21 C 1.38200 * 120.02742 * 179.76651 * 20 19 17 22 22 C 1.38455 * 119.97103 * 0.51564 * 21 20 19 23 23 F 1.35107 * 120.02590 * 179.76696 * 22 21 20 24 24 C 1.38457 * 119.94970 * 359.74026 * 22 21 20 25 25 C 1.38199 * 119.97771 * 0.02562 * 24 22 21 26 26 H 1.09000 * 109.46939 * 59.99651 * 1 2 3 27 27 H 1.08997 * 109.47262 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47425 * 299.99608 * 1 2 3 29 29 H 1.09000 * 109.47211 * 304.99535 * 4 2 1 30 30 H 1.09007 * 109.46376 * 185.00077 * 4 2 1 31 31 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47572 * 54.99886 * 13 2 1 33 33 H 1.09000 * 109.47136 * 175.00019 * 13 2 1 34 34 H 1.09003 * 113.47471 * 336.06773 * 15 14 13 35 35 H 1.08993 * 113.47782 * 106.53128 * 15 14 13 36 36 H 1.08998 * 114.16634 * 272.37424 * 16 15 14 37 37 H 1.09002 * 114.17012 * 139.67157 * 16 15 14 38 38 H 1.08004 * 119.98589 * 0.02699 * 20 19 17 39 39 H 1.07997 * 120.01599 * 180.25599 * 21 20 19 40 40 H 1.08001 * 120.01210 * 180.02562 * 24 22 21 41 41 H 1.07997 * 119.98746 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6414 0.0572 -2.4766 6 1 1.0801 0.9744 -2.3756 7 6 1.9879 -0.4048 -3.7286 8 7 2.6711 -1.5218 -3.8515 9 14 1.4871 0.5560 -5.2502 10 1 2.0789 1.9169 -5.1935 11 1 1.9779 -0.1465 -6.4630 12 1 0.0068 0.6618 -5.3040 13 6 2.0400 -0.7214 1.2491 14 7 1.6514 0.0373 2.4456 15 6 2.7283 0.9543 2.8629 16 6 2.4289 0.5561 4.3149 17 6 1.9134 -0.7390 3.6719 18 1 2.6847 -1.4992 3.5480 19 6 0.6639 -1.2757 4.3212 20 6 -0.4733 -0.4921 4.3834 21 6 -1.6213 -0.9850 4.9743 22 6 -1.6289 -2.2601 5.5136 23 9 -2.7491 -2.7413 6.0958 24 6 -0.4877 -3.0420 5.4555 25 6 0.6576 -2.5489 4.8598 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 1.6054 -1.7198 -1.2952 30 1 3.1264 -0.7994 -1.2056 31 1 2.9146 -1.8469 -4.7323 32 1 1.6054 -1.7199 1.2950 33 1 3.1263 -0.7996 1.2055 34 1 3.7171 0.6460 2.5232 35 1 2.5152 2.0012 2.6470 36 1 1.6543 1.1567 4.7917 37 1 3.3166 0.4245 4.9337 38 1 -0.4659 0.5041 3.9663 39 1 -2.5108 -0.3742 5.0191 40 1 -0.4926 -4.0370 5.8755 41 1 1.5477 -3.1588 4.8140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184143630.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:22 Heat of formation + Delta-G solvation = -18.399155 kcal Electronic energy + Delta-G solvation = -21059.490562 eV Core-core repulsion = 17853.447162 eV Total energy + Delta-G solvation = -3206.043399 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.86622 -41.55293 -39.31631 -36.99490 -34.38708 -32.07713 -31.92718 -30.44617 -28.58067 -26.48566 -26.20614 -24.18668 -23.95923 -22.77524 -20.67486 -20.43775 -18.64383 -18.53885 -17.40800 -17.15571 -16.65517 -16.56801 -16.32213 -15.97040 -15.38964 -15.15655 -14.58292 -14.38991 -14.35322 -14.30003 -13.99495 -13.41346 -13.35577 -13.15129 -12.83619 -12.77589 -12.70221 -12.28750 -12.23461 -12.18520 -11.94934 -11.81140 -11.54784 -11.29605 -11.08572 -10.84831 -10.53197 -9.99717 -9.80099 -9.44228 -8.17668 -6.26866 0.17422 0.35167 1.39640 1.42338 1.50009 2.41680 2.58780 3.15544 3.17478 3.33712 3.56712 3.82031 3.88560 4.01938 4.04326 4.08713 4.29781 4.40817 4.43411 4.46280 4.55027 4.60452 4.74798 4.85298 4.91100 4.97854 5.03222 5.04259 5.08532 5.20927 5.26131 5.26443 5.35990 5.41576 5.45989 5.50041 5.55897 5.67564 5.83721 5.89408 5.98603 6.16152 6.32256 6.88722 7.41401 8.94151 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022940 B = 0.003594 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.291678 B = 7788.007816 C = 8331.928230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.064 4.064 3 H 0.050 0.950 4 C 0.033 3.967 5 C -0.530 4.530 6 H 0.059 0.941 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.959 3.041 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.039 3.961 14 N -0.469 5.469 15 C -0.008 4.008 16 C -0.117 4.117 17 C 0.060 3.940 18 H 0.090 0.910 19 C -0.082 4.082 20 C -0.066 4.066 21 C -0.162 4.162 22 C 0.073 3.927 23 F -0.151 7.151 24 C -0.158 4.158 25 C -0.089 4.089 26 H 0.036 0.964 27 H 0.030 0.970 28 H 0.065 0.935 29 H -0.013 1.013 30 H -0.013 1.013 31 H 0.262 0.738 32 H 0.057 0.943 33 H 0.039 0.961 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.150 0.850 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.843 1.641 21.725 21.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.083 4.083 3 H 0.069 0.931 4 C -0.004 4.004 5 C -0.568 4.568 6 H 0.077 0.923 7 C -0.198 4.198 8 N -0.576 5.576 9 Si 0.784 3.216 10 H -0.192 1.192 11 H -0.209 1.209 12 H -0.194 1.194 13 C -0.089 4.089 14 N -0.191 5.191 15 C -0.136 4.136 16 C -0.155 4.155 17 C -0.049 4.049 18 H 0.108 0.892 19 C -0.083 4.083 20 C -0.085 4.085 21 C -0.180 4.180 22 C 0.054 3.946 23 F -0.130 7.130 24 C -0.177 4.177 25 C -0.107 4.107 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.084 0.916 29 H 0.005 0.995 30 H 0.005 0.995 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.158 0.842 39 H 0.163 0.837 40 H 0.167 0.833 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.479 1.753 21.427 21.778 hybrid contribution 0.430 -0.482 -1.184 1.349 sum -3.049 1.270 20.243 20.510 Atomic orbital electron populations 1.21456 0.95087 0.99919 1.00370 1.20867 0.96282 0.98288 0.92901 0.93111 1.19018 0.94076 0.94520 0.92831 1.21605 1.34547 1.08522 0.92137 0.92276 1.25932 0.95247 0.96061 1.02583 1.70088 1.40324 1.22863 1.24320 0.85586 0.78909 0.78849 0.78237 1.19168 1.20936 1.19352 1.22582 0.97779 0.97053 0.91496 1.68888 1.39012 1.11113 1.00038 1.23870 0.94269 0.99615 0.95893 1.23208 1.02241 0.94528 0.95478 1.22392 0.94014 0.96880 0.91626 0.89200 1.19805 0.95484 0.94333 0.98667 1.20968 0.91057 1.00761 0.95678 1.21340 1.00694 0.94866 1.01135 1.17991 0.83323 0.94308 0.98966 1.91464 1.50730 1.88473 1.82338 1.21302 0.92079 1.01312 1.03008 1.21159 0.98317 0.94918 0.96320 0.94520 0.95119 0.91616 0.99475 0.99496 0.92928 0.92419 0.94290 0.91189 0.89551 0.88199 0.88448 0.84197 0.83747 0.83266 0.83304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.36 8.89 71.98 0.64 -3.72 16 2 C -0.06 -2.67 2.55 -10.79 -0.03 -2.69 16 3 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 4 C 0.03 1.76 4.45 29.85 0.13 1.89 16 5 C -0.53 -30.32 8.41 25.60 0.22 -30.10 16 6 H 0.06 3.26 7.06 -2.91 -0.02 3.24 16 7 C 0.00 -0.06 5.46 84.65 0.46 0.41 16 8 N -0.94 -57.50 13.29 21.45 0.28 -57.22 16 9 Si 0.96 44.77 29.54 68.60 2.03 46.80 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 13 C 0.04 1.32 4.21 86.30 0.36 1.69 16 14 N -0.47 -12.33 5.08 -906.69 -4.61 -16.94 16 15 C -0.01 -0.17 7.71 83.57 0.64 0.48 16 16 C -0.12 -1.91 7.91 30.94 0.24 -1.66 16 17 C 0.06 1.24 3.25 41.44 0.13 1.38 16 18 H 0.09 1.78 7.85 -2.39 -0.02 1.76 16 19 C -0.08 -1.73 5.39 -19.86 -0.11 -1.83 16 20 C -0.07 -1.41 8.86 22.26 0.20 -1.22 16 21 C -0.16 -3.40 10.03 22.31 0.22 -3.18 16 22 C 0.07 1.62 7.30 22.37 0.16 1.79 16 23 F -0.15 -3.56 17.27 44.97 0.78 -2.79 16 24 C -0.16 -3.08 10.03 22.31 0.22 -2.85 16 25 C -0.09 -1.68 9.70 22.26 0.22 -1.46 16 26 H 0.04 1.54 6.95 -2.39 -0.02 1.52 16 27 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.06 2.25 7.75 -2.39 -0.02 2.23 16 29 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 30 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 31 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 32 H 0.06 2.02 8.08 -2.39 -0.02 2.00 16 33 H 0.04 1.31 7.30 -2.39 -0.02 1.29 16 34 H 0.07 1.53 7.42 -2.39 -0.02 1.51 16 35 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.10 1.53 7.62 -2.39 -0.02 1.51 16 37 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.14 2.90 7.81 -2.91 -0.02 2.88 16 39 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 40 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 41 H 0.15 2.15 8.05 -2.91 -0.02 2.13 16 Total: -1.00 -65.27 339.78 3.20 -62.07 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 0.99 Total: 9.18 kcal Atomic # 6 Polarization: -44.83 SS G_CDS: 3.73 Total: -41.11 kcal Atomic # 7 Polarization: -69.83 SS G_CDS: -4.32 Total: -74.16 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.78 Total: -2.79 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -65.27 3.20 -62.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184143630.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.666 kcal (2) G-P(sol) polarization free energy of solvation -65.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds