Wall clock time and date at job start Mon Mar 30 2020 02:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.29061 * 2 1 4 4 C 1.54481 * 110.32588 * 237.86781 * 2 1 3 5 5 C 1.54512 * 101.96949 * 266.62854 * 4 2 1 6 6 C 1.50944 * 104.96893 * 334.51831 * 5 4 2 7 7 C 1.41378 * 143.69540 * 196.77220 * 6 5 4 8 8 C 1.47716 * 126.57305 * 359.94790 * 7 6 5 9 9 O 1.21562 * 119.99829 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99918 * 180.02562 * 8 7 6 11 11 C 1.46498 * 120.00064 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.47313 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.47367 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.46995 * 180.02562 * 13 12 11 15 15 H 1.07991 * 120.00449 * 359.72153 * 14 13 12 16 16 C 1.37885 * 119.99686 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00035 * 179.72339 * 16 14 13 18 18 Si 1.86803 * 119.99853 * 359.72191 * 16 14 13 19 19 H 1.48500 * 109.46986 * 90.00256 * 18 16 14 20 20 H 1.48496 * 109.47029 * 210.00273 * 18 16 14 21 21 H 1.48499 * 109.47352 * 330.00102 * 18 16 14 22 22 N 1.31845 * 106.85270 * 180.21062 * 7 6 5 23 23 N 1.28453 * 110.06198 * 359.62131 * 22 7 6 24 24 H 0.96997 * 124.88831 * 180.18310 * 23 22 7 25 25 C 1.35049 * 110.52287 * 16.77152 * 6 5 4 26 26 H 1.08994 * 109.47135 * 182.13711 * 1 2 3 27 27 H 1.08998 * 109.47012 * 302.13529 * 1 2 3 28 28 H 1.09000 * 109.47043 * 62.13382 * 1 2 3 29 29 H 1.08997 * 110.93029 * 148.46145 * 4 2 1 30 30 H 1.08999 * 110.92839 * 24.79837 * 4 2 1 31 31 H 1.09003 * 110.34144 * 215.64612 * 5 4 2 32 32 H 1.09000 * 110.42951 * 93.43644 * 5 4 2 33 33 H 0.96998 * 119.99560 * 0.02562 * 10 8 7 34 34 H 1.08998 * 109.47084 * 59.99574 * 11 10 8 35 35 H 1.09001 * 109.46927 * 299.99804 * 11 10 8 36 36 H 1.08998 * 109.47353 * 59.99788 * 12 11 10 37 37 H 1.09006 * 109.47395 * 300.00044 * 12 11 10 38 38 H 1.08998 * 109.47065 * 59.99602 * 13 12 11 39 39 H 1.09001 * 109.46892 * 299.99866 * 13 12 11 40 40 H 0.97000 * 119.99706 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0666 -0.7705 -1.2267 5 6 2.2613 -2.1917 -0.6525 6 6 2.4654 -1.9889 0.8293 7 6 2.9333 -2.6093 2.0103 8 6 3.4870 -3.9737 2.1279 9 8 3.5742 -4.6811 1.1431 10 7 3.8955 -4.4342 3.3268 11 6 4.4451 -5.7872 3.4433 12 6 4.8294 -6.0580 4.8992 13 6 5.4040 -7.4708 5.0208 14 6 5.7819 -7.7377 6.4550 15 1 5.6319 -6.9743 7.2040 16 6 6.3241 -8.9547 6.8100 17 7 6.6590 -9.1857 8.0606 18 14 6.5830 -10.2754 5.5145 19 1 7.9355 -10.1268 4.9195 20 1 6.4631 -11.6155 6.1429 21 1 5.5562 -10.1338 4.4511 22 7 2.7754 -1.7387 2.9878 23 7 2.2689 -0.6502 2.5308 24 1 2.0656 0.1339 3.0644 25 6 2.0554 -0.7565 1.1994 26 1 -0.3633 -1.0269 0.0383 27 1 -0.3633 0.5466 0.8702 28 1 -0.3633 0.4803 -0.9085 29 1 3.0155 -0.3534 -1.5639 30 1 1.3352 -0.7738 -2.0349 31 1 3.1393 -2.6622 -1.0950 32 1 1.3749 -2.7997 -0.8331 33 1 3.8255 -3.8698 4.1126 34 1 5.3292 -5.8758 2.8120 35 1 3.6965 -6.5122 3.1239 36 1 3.9455 -5.9693 5.5309 37 1 5.5782 -5.3329 5.2183 38 1 6.2880 -7.5591 4.3892 39 1 4.6556 -8.1961 4.7016 40 1 7.0401 -10.0420 8.3103 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198450007.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:10 Heat of formation + Delta-G solvation = 24.651507 kcal Electronic energy + Delta-G solvation = -20553.493070 eV Core-core repulsion = 17369.236449 eV Total energy + Delta-G solvation = -3184.256621 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.13570 -39.16436 -37.74647 -35.44876 -33.28779 -32.47114 -31.40647 -30.26633 -28.97676 -27.28183 -25.24838 -24.30327 -22.39929 -21.42860 -20.59293 -20.22522 -19.50238 -17.66919 -17.01256 -16.56385 -16.34675 -15.47583 -15.36114 -14.96895 -14.32341 -14.15751 -13.76519 -13.69381 -13.36492 -12.83836 -12.82963 -12.74344 -12.66919 -11.97459 -11.88317 -11.74764 -11.34362 -11.10974 -11.03663 -10.94677 -10.85841 -10.26826 -9.95711 -9.76316 -9.60070 -9.54230 -9.18848 -8.88674 -8.75758 -8.52175 -6.02980 -4.01372 1.44869 1.88358 2.39480 3.33504 3.34523 3.41606 3.46364 3.47445 3.93889 4.14383 4.41263 4.47682 4.53156 4.71843 4.94569 4.98366 5.15032 5.22635 5.30661 5.31181 5.51499 5.55575 5.66200 5.70360 5.71879 5.72464 5.89601 5.91688 6.07528 6.19888 6.40671 6.50574 6.72031 6.79127 6.84374 7.27725 7.41072 7.52390 7.78062 7.83775 8.36842 8.54391 9.01343 9.59359 11.10317 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.044309 B = 0.002793 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.780540 B =10023.419317 C =10508.509188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.007 4.007 3 H 0.082 0.918 4 C -0.113 4.113 5 C -0.047 4.047 6 C -0.158 4.158 7 C 0.012 3.988 8 C 0.596 3.404 9 O -0.534 6.534 10 N -0.712 5.712 11 C 0.114 3.886 12 C -0.114 4.114 13 C -0.011 4.011 14 C -0.521 4.521 15 H 0.072 0.928 16 C 0.066 3.934 17 N -0.904 5.904 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.264 1.264 22 N -0.250 5.250 23 N -0.364 5.364 24 H 0.443 0.557 25 C -0.020 4.020 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.405 0.595 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.015 0.985 39 H 0.019 0.981 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.537 22.326 -17.847 31.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.028 4.028 3 H 0.101 0.899 4 C -0.151 4.151 5 C -0.085 4.085 6 C -0.168 4.168 7 C -0.148 4.148 8 C 0.380 3.620 9 O -0.409 6.409 10 N -0.363 5.363 11 C -0.008 4.008 12 C -0.152 4.152 13 C -0.049 4.049 14 C -0.559 4.559 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.543 5.543 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.188 1.188 22 N -0.086 5.086 23 N -0.076 5.076 24 H 0.287 0.713 25 C -0.147 4.147 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.240 0.760 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.033 0.967 39 H 0.037 0.963 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.202 21.722 -17.280 30.320 hybrid contribution -0.007 -0.121 -0.358 0.378 sum -12.209 21.601 -17.638 30.442 Atomic orbital electron populations 1.21842 0.93393 1.02803 1.02177 1.20229 0.95823 0.98353 0.88356 0.89921 1.22525 1.01759 0.94686 0.96098 1.20400 1.02908 0.96745 0.88467 1.20852 1.04973 0.94214 0.96754 1.21473 1.07411 0.95871 0.90080 1.16925 0.77769 0.83634 0.83703 1.90778 1.55915 1.57056 1.37191 1.46040 1.62980 1.17546 1.09729 1.21702 0.98397 0.81307 0.99440 1.21710 1.00909 1.00440 0.92102 1.19507 0.95810 0.91588 0.98005 1.21108 1.41355 1.00804 0.92625 0.91002 1.25035 0.94883 0.98373 0.95243 1.69916 1.43388 1.24126 1.16859 0.86769 0.79156 0.81111 0.82240 1.20256 1.21410 1.18838 1.73742 1.15821 0.93701 1.25293 1.42589 1.45979 1.13214 1.05777 0.71302 1.22129 1.06315 0.99767 0.86495 0.91877 0.92596 0.91432 0.90411 0.89651 0.90080 0.90189 0.75977 0.91555 0.91546 0.92023 0.92055 0.96703 0.96253 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.71 9.15 37.16 0.34 -0.37 16 2 C -0.01 -0.04 3.48 -90.74 -0.32 -0.36 16 3 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 4 C -0.11 -0.68 6.65 -25.16 -0.17 -0.85 16 5 C -0.05 -0.45 6.78 -26.97 -0.18 -0.64 16 6 C -0.16 -1.92 6.82 -104.44 -0.71 -2.63 16 7 C 0.01 0.18 7.13 -82.80 -0.59 -0.41 16 8 C 0.60 9.99 7.82 -12.39 -0.10 9.90 16 9 O -0.53 -10.38 16.93 5.31 0.09 -10.29 16 10 N -0.71 -11.33 5.55 -61.30 -0.34 -11.67 16 11 C 0.11 2.01 5.67 -4.05 -0.02 1.99 16 12 C -0.11 -2.22 5.27 -26.73 -0.14 -2.36 16 13 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 14 C -0.52 -14.94 9.66 -34.44 -0.33 -15.28 16 15 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 16 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 17 N -0.90 -28.13 13.96 55.43 0.77 -27.36 16 18 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 22 N -0.25 -3.12 11.93 33.40 0.40 -2.72 16 23 N -0.36 -3.29 6.84 33.61 0.23 -3.06 16 24 H 0.44 2.30 8.96 -190.45 -1.71 0.59 16 25 C -0.02 -0.19 7.43 -81.96 -0.61 -0.80 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.36 7.90 -51.93 -0.41 -0.05 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.41 5.77 8.20 -40.82 -0.33 5.43 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.01 0.35 7.58 -51.93 -0.39 -0.04 16 39 H 0.02 0.46 7.19 -51.93 -0.37 0.09 16 40 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 334.49 15.07 5.04 5.04 Total: -1.00 -34.74 334.49 -8.97 -43.71 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -7.46 Total: -0.66 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -3.04 Total: -10.35 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: 1.06 Total: -44.81 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.74 -8.97 -43.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198450007.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.363 kcal (2) G-P(sol) polarization free energy of solvation -34.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds