Wall clock time and date at job start Mon Mar 30 2020 02:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.29061 * 2 1 4 4 C 1.54481 * 110.32588 * 237.86781 * 2 1 3 5 5 C 1.54512 * 101.96949 * 266.62854 * 4 2 1 6 6 C 1.50944 * 104.96893 * 334.51831 * 5 4 2 7 7 C 1.41378 * 143.69540 * 196.77220 * 6 5 4 8 8 C 1.47716 * 126.57305 * 359.94790 * 7 6 5 9 9 O 1.21562 * 119.99829 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99918 * 180.02562 * 8 7 6 11 11 C 1.46498 * 120.00064 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.47313 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.47367 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.46995 * 180.02562 * 13 12 11 15 15 H 1.07991 * 120.00449 * 359.72153 * 14 13 12 16 16 C 1.37885 * 119.99686 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00035 * 179.72339 * 16 14 13 18 18 Si 1.86803 * 119.99853 * 359.72191 * 16 14 13 19 19 H 1.48500 * 109.46986 * 90.00256 * 18 16 14 20 20 H 1.48496 * 109.47029 * 210.00273 * 18 16 14 21 21 H 1.48499 * 109.47352 * 330.00102 * 18 16 14 22 22 N 1.31845 * 106.85270 * 180.21062 * 7 6 5 23 23 N 1.28453 * 110.06198 * 359.62131 * 22 7 6 24 24 H 0.96997 * 124.88831 * 180.18310 * 23 22 7 25 25 C 1.35049 * 110.52287 * 16.77152 * 6 5 4 26 26 H 1.08994 * 109.47135 * 182.13711 * 1 2 3 27 27 H 1.08998 * 109.47012 * 302.13529 * 1 2 3 28 28 H 1.09000 * 109.47043 * 62.13382 * 1 2 3 29 29 H 1.08997 * 110.93029 * 148.46145 * 4 2 1 30 30 H 1.08999 * 110.92839 * 24.79837 * 4 2 1 31 31 H 1.09003 * 110.34144 * 215.64612 * 5 4 2 32 32 H 1.09000 * 110.42951 * 93.43644 * 5 4 2 33 33 H 0.96998 * 119.99560 * 0.02562 * 10 8 7 34 34 H 1.08998 * 109.47084 * 59.99574 * 11 10 8 35 35 H 1.09001 * 109.46927 * 299.99804 * 11 10 8 36 36 H 1.08998 * 109.47353 * 59.99788 * 12 11 10 37 37 H 1.09006 * 109.47395 * 300.00044 * 12 11 10 38 38 H 1.08998 * 109.47065 * 59.99602 * 13 12 11 39 39 H 1.09001 * 109.46892 * 299.99866 * 13 12 11 40 40 H 0.97000 * 119.99706 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0666 -0.7705 -1.2267 5 6 2.2613 -2.1917 -0.6525 6 6 2.4654 -1.9889 0.8293 7 6 2.9333 -2.6093 2.0103 8 6 3.4870 -3.9737 2.1279 9 8 3.5742 -4.6811 1.1431 10 7 3.8955 -4.4342 3.3268 11 6 4.4451 -5.7872 3.4433 12 6 4.8294 -6.0580 4.8992 13 6 5.4040 -7.4708 5.0208 14 6 5.7819 -7.7377 6.4550 15 1 5.6319 -6.9743 7.2040 16 6 6.3241 -8.9547 6.8100 17 7 6.6590 -9.1857 8.0606 18 14 6.5830 -10.2754 5.5145 19 1 7.9355 -10.1268 4.9195 20 1 6.4631 -11.6155 6.1429 21 1 5.5562 -10.1338 4.4511 22 7 2.7754 -1.7387 2.9878 23 7 2.2689 -0.6502 2.5308 24 1 2.0656 0.1339 3.0644 25 6 2.0554 -0.7565 1.1994 26 1 -0.3633 -1.0269 0.0383 27 1 -0.3633 0.5466 0.8702 28 1 -0.3633 0.4803 -0.9085 29 1 3.0155 -0.3534 -1.5639 30 1 1.3352 -0.7738 -2.0349 31 1 3.1393 -2.6622 -1.0950 32 1 1.3749 -2.7997 -0.8331 33 1 3.8255 -3.8698 4.1126 34 1 5.3292 -5.8758 2.8120 35 1 3.6965 -6.5122 3.1239 36 1 3.9455 -5.9693 5.5309 37 1 5.5782 -5.3329 5.2183 38 1 6.2880 -7.5591 4.3892 39 1 4.6556 -8.1961 4.7016 40 1 7.0401 -10.0420 8.3103 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198450007.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:09 Heat of formation + Delta-G solvation = 0.100303 kcal Electronic energy + Delta-G solvation = -20554.557690 eV Core-core repulsion = 17369.236449 eV Total energy + Delta-G solvation = -3185.321241 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.97524 -40.49304 -38.36792 -37.02345 -35.17187 -33.61600 -32.97383 -31.02835 -29.69752 -29.02608 -25.77582 -25.72279 -23.88427 -22.26573 -22.12239 -21.05020 -20.80249 -18.97692 -18.37761 -17.89496 -17.22543 -16.91033 -16.57607 -16.18644 -15.78143 -15.24816 -15.11390 -14.79317 -14.66954 -14.07918 -13.82730 -13.66099 -13.43485 -13.39173 -13.26578 -12.75936 -12.71093 -12.41139 -11.99266 -11.83990 -11.79930 -11.74362 -11.61165 -11.56942 -11.34865 -11.20381 -10.76329 -10.51074 -10.09464 -9.66352 -8.29501 -6.33643 0.42109 1.04264 1.37478 1.38931 1.51305 1.66431 2.13727 2.27465 2.36777 3.06071 3.16639 3.54280 3.59447 3.99890 4.08706 4.10178 4.17549 4.20956 4.48148 4.50651 4.59810 4.70050 4.78049 4.86520 4.87607 4.91346 5.02045 5.08023 5.16342 5.21185 5.26019 5.31801 5.35910 5.45705 5.46471 5.54351 5.64423 6.07810 6.27236 6.41248 6.74063 6.80247 7.09726 7.30997 8.87037 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.044309 B = 0.002793 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.780540 B =10023.419317 C =10508.509188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.003 4.003 3 H 0.111 0.889 4 C -0.104 4.104 5 C -0.052 4.052 6 C -0.192 4.192 7 C -0.022 4.022 8 C 0.595 3.405 9 O -0.569 6.569 10 N -0.707 5.707 11 C 0.126 3.874 12 C -0.101 4.101 13 C -0.011 4.011 14 C -0.532 4.532 15 H 0.036 0.964 16 C 0.004 3.996 17 N -0.951 5.951 18 Si 0.949 3.051 19 H -0.267 1.267 20 H -0.284 1.284 21 H -0.247 1.247 22 N -0.261 5.261 23 N -0.345 5.345 24 H 0.461 0.539 25 C 0.001 3.999 26 H 0.045 0.955 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.414 0.586 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.022 0.978 39 H 0.023 0.977 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.606 24.183 -20.078 34.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.023 4.023 3 H 0.129 0.871 4 C -0.141 4.141 5 C -0.090 4.090 6 C -0.202 4.202 7 C -0.181 4.181 8 C 0.380 3.620 9 O -0.447 6.447 10 N -0.358 5.358 11 C 0.003 3.997 12 C -0.139 4.139 13 C -0.049 4.049 14 C -0.570 4.570 15 H 0.054 0.946 16 C -0.193 4.193 17 N -0.592 5.592 18 Si 0.773 3.227 19 H -0.192 1.192 20 H -0.210 1.210 21 H -0.170 1.170 22 N -0.098 5.098 23 N -0.060 5.060 24 H 0.309 0.691 25 C -0.127 4.127 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.127 0.873 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.250 0.750 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.040 0.960 39 H 0.042 0.958 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.283 23.621 -19.489 33.380 hybrid contribution 0.288 -0.580 0.418 0.771 sum -12.995 23.041 -19.071 32.611 Atomic orbital electron populations 1.21845 0.92312 1.02143 1.03689 1.20430 0.96529 0.99162 0.86170 0.87141 1.22565 1.02991 0.91903 0.96669 1.20510 1.01925 0.99200 0.87400 1.21274 1.05941 0.95423 0.97602 1.21244 1.09690 0.95327 0.91797 1.17264 0.77105 0.84502 0.83108 1.90741 1.57433 1.58317 1.38168 1.45904 1.62767 1.16969 1.10137 1.21412 0.98324 0.82278 0.97689 1.21488 1.00773 0.98047 0.93550 1.19461 0.96325 0.94187 0.94917 1.21458 1.41062 1.00072 0.94382 0.94613 1.26009 0.94634 1.01124 0.97539 1.70064 1.44769 1.25097 1.19229 0.85668 0.79859 0.77679 0.79540 1.19163 1.20963 1.17003 1.73654 1.16452 0.94460 1.25226 1.42689 1.44199 1.12873 1.06256 0.69108 1.22699 1.04183 0.99102 0.86746 0.93550 0.91925 0.89230 0.89630 0.87273 0.91888 0.90528 0.75015 0.91749 0.91822 0.91902 0.91892 0.95960 0.95833 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.15 71.98 0.66 -0.26 16 2 C 0.00 -0.02 3.48 -10.87 -0.04 -0.06 16 3 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 4 C -0.10 -0.97 6.65 31.61 0.21 -0.76 16 5 C -0.05 -0.97 6.78 30.44 0.21 -0.77 16 6 C -0.19 -4.57 6.82 -19.75 -0.13 -4.70 16 7 C -0.02 -0.63 7.13 42.42 0.30 -0.33 16 8 C 0.59 20.28 7.82 86.75 0.68 20.96 16 9 O -0.57 -22.68 16.93 -3.91 -0.07 -22.75 16 10 N -0.71 -22.53 5.55 -466.12 -2.59 -25.12 16 11 C 0.13 4.40 5.67 86.38 0.49 4.89 16 12 C -0.10 -3.91 5.27 30.59 0.16 -3.75 16 13 C -0.01 -0.52 4.04 29.85 0.12 -0.40 16 14 C -0.53 -31.00 9.66 25.60 0.25 -30.75 16 15 H 0.04 2.27 7.99 -2.92 -0.02 2.24 16 16 C 0.00 0.22 5.47 84.66 0.46 0.68 16 17 N -0.95 -60.40 13.96 21.45 0.30 -60.10 16 18 Si 0.95 45.13 27.47 68.60 1.88 47.02 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 21 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 22 N -0.26 -6.30 11.93 -48.23 -0.58 -6.87 16 23 N -0.35 -5.58 6.84 -47.57 -0.33 -5.91 16 24 H 0.46 3.58 8.96 -220.00 -1.97 1.61 16 25 C 0.00 0.01 7.43 41.46 0.31 0.32 16 26 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.09 0.69 8.14 -2.39 -0.02 0.68 16 30 H 0.11 0.53 7.90 -2.39 -0.02 0.51 16 31 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.41 11.74 8.20 -92.71 -0.76 10.98 16 34 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 38 H 0.02 1.02 7.58 -2.39 -0.02 1.00 16 39 H 0.02 1.09 7.19 -2.39 -0.02 1.07 16 40 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -77.00 334.49 0.57 -76.42 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -1.73 Total: 12.23 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: 3.67 Total: -14.92 kcal Atomic # 7 Polarization: -94.81 SS G_CDS: -3.19 Total: -98.00 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.07 Total: -22.75 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.02 kcal Total: -77.00 0.57 -76.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198450007.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.522 kcal (2) G-P(sol) polarization free energy of solvation -76.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds