Wall clock time and date at job start Mon Mar 30 2020 02:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 110.28970 * 2 1 4 4 C 1.54483 * 110.32934 * 122.23657 * 2 1 3 5 5 C 1.54516 * 101.96979 * 93.36340 * 4 2 1 6 6 C 1.50948 * 105.02975 * 25.26961 * 5 4 2 7 7 C 1.41381 * 143.69690 * 162.57582 * 6 5 4 8 8 C 1.47711 * 126.56964 * 0.91825 * 7 6 5 9 9 O 1.21573 * 120.00075 * 359.71665 * 8 7 6 10 10 N 1.34777 * 119.99927 * 179.44159 * 8 7 6 11 11 C 1.46499 * 120.00195 * 180.27919 * 10 8 7 12 12 C 1.52997 * 109.47551 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.47270 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.46983 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99624 * 359.97438 * 14 13 12 16 16 C 1.37869 * 120.00027 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00263 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00096 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46973 * 90.00363 * 18 16 14 20 20 H 1.48505 * 109.47151 * 210.00008 * 18 16 14 21 21 H 1.48491 * 109.46932 * 330.00390 * 18 16 14 22 22 N 1.31846 * 106.85543 * 180.66150 * 7 6 5 23 23 N 1.28459 * 110.06144 * 0.23370 * 22 7 6 24 24 H 0.96993 * 124.87987 * 179.97438 * 23 22 7 25 25 C 1.35059 * 110.52244 * 343.63280 * 6 5 4 26 26 H 1.09003 * 109.46195 * 180.68515 * 1 2 3 27 27 H 1.09001 * 109.46796 * 300.67788 * 1 2 3 28 28 H 1.08994 * 109.47161 * 60.68774 * 1 2 3 29 29 H 1.08993 * 110.93336 * 211.53154 * 4 2 1 30 30 H 1.09004 * 110.93102 * 335.16417 * 4 2 1 31 31 H 1.08998 * 110.34458 * 144.35216 * 5 4 2 32 32 H 1.09005 * 110.34497 * 266.61075 * 5 4 2 33 33 H 0.97000 * 119.99736 * 0.27192 * 10 8 7 34 34 H 1.08998 * 109.46795 * 299.99885 * 11 10 8 35 35 H 1.09002 * 109.47196 * 59.99076 * 11 10 8 36 36 H 1.09007 * 109.46479 * 299.99856 * 12 11 10 37 37 H 1.08997 * 109.46852 * 59.99432 * 12 11 10 38 38 H 1.08992 * 109.46818 * 299.99508 * 13 12 11 39 39 H 1.08997 * 109.47123 * 59.99715 * 13 12 11 40 40 H 0.96994 * 120.00789 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0667 -0.7727 1.2253 5 6 2.2612 -2.1929 0.6485 6 6 2.4600 -1.9895 -0.8339 7 6 2.9333 -2.6056 -2.0152 8 6 3.4871 -3.9697 -2.1352 9 8 3.5738 -4.6793 -1.1518 10 7 3.8911 -4.4298 -3.3358 11 6 4.4347 -5.7849 -3.4560 12 6 4.8136 -6.0551 -4.9134 13 6 5.3819 -7.4701 -5.0387 14 6 5.7546 -7.7365 -6.4744 15 1 5.6010 -6.9730 -7.2227 16 6 6.2915 -8.9547 -6.8326 17 7 6.4780 -9.8847 -5.9215 18 14 6.7541 -9.2846 -8.6121 19 1 8.1635 -8.8763 -8.8410 20 1 6.6053 -10.7335 -8.9019 21 1 5.8616 -8.5063 -9.5080 22 7 2.7804 -1.7312 -2.9901 23 7 2.2693 -0.6454 -2.5319 24 1 2.0664 0.1398 -3.0640 25 6 2.0554 -0.7543 -1.2008 26 1 -0.3632 -1.0277 0.0123 27 1 -0.3633 0.5243 0.8839 28 1 -0.3633 0.5031 -0.8960 29 1 3.0157 -0.3564 1.5632 30 1 1.3356 -0.7770 2.0338 31 1 3.1393 -2.6643 1.0900 32 1 1.3737 -2.7998 0.8282 33 1 3.8219 -3.8637 -4.1204 34 1 5.3197 -5.8784 -2.8267 35 1 3.6837 -6.5073 -3.1362 36 1 3.9282 -5.9617 -5.5423 37 1 5.5644 -5.3327 -5.2335 38 1 6.2673 -7.5630 -4.4099 39 1 4.6314 -8.1927 -4.7184 40 1 6.8561 -10.7416 -6.1734 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198450009.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:13 Heat of formation + Delta-G solvation = 21.109934 kcal Electronic energy + Delta-G solvation = -20502.500512 eV Core-core repulsion = 17318.090317 eV Total energy + Delta-G solvation = -3184.410195 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.09909 -39.08366 -37.71410 -35.32070 -33.27764 -32.44208 -31.19949 -30.16568 -28.94401 -26.85566 -25.22033 -24.27007 -22.53717 -21.41208 -20.61206 -20.18601 -19.48468 -17.63562 -16.82090 -16.35500 -16.27315 -15.32093 -15.26772 -14.88416 -14.41843 -14.27079 -13.71101 -13.61010 -13.35485 -12.80863 -12.79817 -12.71108 -12.24730 -11.82376 -11.69053 -11.66640 -11.31856 -11.08294 -10.92317 -10.87408 -10.68042 -10.56748 -10.02641 -9.81028 -9.50196 -9.36801 -9.08055 -8.84774 -8.66898 -8.33576 -5.98274 -4.01079 1.48922 1.92342 2.42609 3.33431 3.39001 3.40528 3.43895 3.53597 3.97438 4.17370 4.45004 4.48116 4.55857 4.75195 4.97341 5.02066 5.18266 5.25406 5.33280 5.37431 5.56714 5.59197 5.72146 5.74181 5.82312 5.84625 5.92800 5.95565 6.21802 6.24982 6.54795 6.66521 6.77464 6.91373 7.05704 7.57453 7.68054 7.81186 7.88764 8.00988 8.41088 8.45786 9.05648 9.62852 11.13087 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.047210 B = 0.002645 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.948926 B =10582.766057 C =11030.007694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.007 4.007 3 H 0.082 0.918 4 C -0.113 4.113 5 C -0.047 4.047 6 C -0.157 4.157 7 C 0.013 3.987 8 C 0.595 3.405 9 O -0.534 6.534 10 N -0.712 5.712 11 C 0.116 3.884 12 C -0.121 4.121 13 C 0.024 3.976 14 C -0.521 4.521 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.894 5.894 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 N -0.251 5.251 23 N -0.364 5.364 24 H 0.443 0.557 25 C -0.021 4.021 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.404 0.596 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.967 23.718 12.754 29.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.027 4.027 3 H 0.100 0.900 4 C -0.151 4.151 5 C -0.085 4.085 6 C -0.168 4.168 7 C -0.147 4.147 8 C 0.378 3.622 9 O -0.409 6.409 10 N -0.363 5.363 11 C -0.006 4.006 12 C -0.159 4.159 13 C -0.014 4.014 14 C -0.559 4.559 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 N -0.087 5.087 23 N -0.076 5.076 24 H 0.286 0.714 25 C -0.148 4.148 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.238 0.762 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.642 23.067 12.331 28.630 hybrid contribution 0.068 0.361 -1.121 1.179 sum -11.574 23.429 11.210 28.434 Atomic orbital electron populations 1.21841 0.93417 1.02835 1.02111 1.20231 0.95804 0.98337 0.88364 0.89955 1.22523 1.01745 0.94698 0.96093 1.20403 1.02952 0.96729 0.88448 1.20857 1.04993 0.94150 0.96759 1.21509 1.07212 0.95867 0.90134 1.16934 0.77860 0.83620 0.83777 1.90785 1.55820 1.56920 1.37333 1.46087 1.63177 1.17474 1.09543 1.21699 0.98482 0.80895 0.99540 1.21893 1.00421 1.01652 0.91936 1.19032 0.96184 0.89041 0.97131 1.21214 1.41489 0.99293 0.93951 0.92644 1.25028 0.95833 0.96272 0.97365 1.69965 1.44809 1.05459 1.33105 0.86583 0.78813 0.77359 0.85167 1.20676 1.21224 1.19913 1.73741 1.15827 0.93776 1.25334 1.42580 1.45955 1.13307 1.05781 0.71358 1.22133 1.06446 0.99702 0.86508 0.91845 0.91464 0.92632 0.90424 0.89655 0.90013 0.90207 0.76154 0.91528 0.91535 0.92669 0.92672 0.96221 0.96218 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 9.15 37.16 0.34 -0.40 16 2 C -0.01 -0.04 3.48 -90.73 -0.32 -0.36 16 3 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 4 C -0.11 -0.71 6.66 -25.16 -0.17 -0.88 16 5 C -0.05 -0.47 6.77 -26.97 -0.18 -0.65 16 6 C -0.16 -1.97 6.83 -104.44 -0.71 -2.69 16 7 C 0.01 0.20 7.13 -82.80 -0.59 -0.39 16 8 C 0.59 10.35 7.83 -12.39 -0.10 10.25 16 9 O -0.53 -10.78 16.93 5.30 0.09 -10.69 16 10 N -0.71 -11.84 5.55 -61.29 -0.34 -12.18 16 11 C 0.12 2.18 5.67 -4.04 -0.02 2.16 16 12 C -0.12 -2.48 5.27 -26.73 -0.14 -2.62 16 13 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 14 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -27.19 13.29 55.43 0.74 -26.45 16 18 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 22 N -0.25 -3.21 11.93 33.40 0.40 -2.81 16 23 N -0.36 -3.39 6.84 33.61 0.23 -3.16 16 24 H 0.44 2.38 8.96 -190.45 -1.71 0.67 16 25 C -0.02 -0.20 7.43 -81.95 -0.61 -0.81 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.38 7.90 -51.93 -0.41 -0.03 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.40 5.97 8.20 -40.82 -0.33 5.63 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 36 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 338.10 15.07 5.10 5.10 Total: -1.00 -34.32 338.10 -9.35 -43.67 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -7.49 Total: -0.74 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -3.05 Total: -9.54 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 1.02 Total: -44.60 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.32 -9.35 -43.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198450009.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.782 kcal (2) G-P(sol) polarization free energy of solvation -34.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds