Wall clock time and date at job start Mon Mar 30 2020 02:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 110.28970 * 2 1 4 4 C 1.54483 * 110.32934 * 122.23657 * 2 1 3 5 5 C 1.54516 * 101.96979 * 93.36340 * 4 2 1 6 6 C 1.50948 * 105.02975 * 25.26961 * 5 4 2 7 7 C 1.41381 * 143.69690 * 162.57582 * 6 5 4 8 8 C 1.47711 * 126.56964 * 0.91825 * 7 6 5 9 9 O 1.21573 * 120.00075 * 359.71665 * 8 7 6 10 10 N 1.34777 * 119.99927 * 179.44159 * 8 7 6 11 11 C 1.46499 * 120.00195 * 180.27919 * 10 8 7 12 12 C 1.52997 * 109.47551 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.47270 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.46983 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99624 * 359.97438 * 14 13 12 16 16 C 1.37869 * 120.00027 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00263 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00096 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46973 * 90.00363 * 18 16 14 20 20 H 1.48505 * 109.47151 * 210.00008 * 18 16 14 21 21 H 1.48491 * 109.46932 * 330.00390 * 18 16 14 22 22 N 1.31846 * 106.85543 * 180.66150 * 7 6 5 23 23 N 1.28459 * 110.06144 * 0.23370 * 22 7 6 24 24 H 0.96993 * 124.87987 * 179.97438 * 23 22 7 25 25 C 1.35059 * 110.52244 * 343.63280 * 6 5 4 26 26 H 1.09003 * 109.46195 * 180.68515 * 1 2 3 27 27 H 1.09001 * 109.46796 * 300.67788 * 1 2 3 28 28 H 1.08994 * 109.47161 * 60.68774 * 1 2 3 29 29 H 1.08993 * 110.93336 * 211.53154 * 4 2 1 30 30 H 1.09004 * 110.93102 * 335.16417 * 4 2 1 31 31 H 1.08998 * 110.34458 * 144.35216 * 5 4 2 32 32 H 1.09005 * 110.34497 * 266.61075 * 5 4 2 33 33 H 0.97000 * 119.99736 * 0.27192 * 10 8 7 34 34 H 1.08998 * 109.46795 * 299.99885 * 11 10 8 35 35 H 1.09002 * 109.47196 * 59.99076 * 11 10 8 36 36 H 1.09007 * 109.46479 * 299.99856 * 12 11 10 37 37 H 1.08997 * 109.46852 * 59.99432 * 12 11 10 38 38 H 1.08992 * 109.46818 * 299.99508 * 13 12 11 39 39 H 1.08997 * 109.47123 * 59.99715 * 13 12 11 40 40 H 0.96994 * 120.00789 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0667 -0.7727 1.2253 5 6 2.2612 -2.1929 0.6485 6 6 2.4600 -1.9895 -0.8339 7 6 2.9333 -2.6056 -2.0152 8 6 3.4871 -3.9697 -2.1352 9 8 3.5738 -4.6793 -1.1518 10 7 3.8911 -4.4298 -3.3358 11 6 4.4347 -5.7849 -3.4560 12 6 4.8136 -6.0551 -4.9134 13 6 5.3819 -7.4701 -5.0387 14 6 5.7546 -7.7365 -6.4744 15 1 5.6010 -6.9730 -7.2227 16 6 6.2915 -8.9547 -6.8326 17 7 6.4780 -9.8847 -5.9215 18 14 6.7541 -9.2846 -8.6121 19 1 8.1635 -8.8763 -8.8410 20 1 6.6053 -10.7335 -8.9019 21 1 5.8616 -8.5063 -9.5080 22 7 2.7804 -1.7312 -2.9901 23 7 2.2693 -0.6454 -2.5319 24 1 2.0664 0.1398 -3.0640 25 6 2.0554 -0.7543 -1.2008 26 1 -0.3632 -1.0277 0.0123 27 1 -0.3633 0.5243 0.8839 28 1 -0.3633 0.5031 -0.8960 29 1 3.0157 -0.3564 1.5632 30 1 1.3356 -0.7770 2.0338 31 1 3.1393 -2.6643 1.0900 32 1 1.3737 -2.7998 0.8282 33 1 3.8219 -3.8637 -4.1204 34 1 5.3197 -5.8784 -2.8267 35 1 3.6837 -6.5073 -3.1362 36 1 3.9282 -5.9617 -5.5423 37 1 5.5644 -5.3327 -5.2335 38 1 6.2673 -7.5630 -4.4099 39 1 4.6314 -8.1927 -4.7184 40 1 6.8561 -10.7416 -6.1734 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198450009.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:12 Heat of formation + Delta-G solvation = -2.536853 kcal Electronic energy + Delta-G solvation = -20503.525914 eV Core-core repulsion = 17318.090317 eV Total energy + Delta-G solvation = -3185.435597 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.97523 -40.49565 -38.36650 -36.99568 -35.21883 -33.53453 -32.80437 -30.98606 -29.69779 -28.69369 -25.82897 -25.77496 -24.09027 -22.34520 -22.14132 -21.04845 -20.81832 -18.58350 -18.36366 -17.89554 -17.22514 -16.85064 -16.55642 -16.40830 -15.77370 -15.23060 -15.14344 -14.72962 -14.27047 -14.06560 -13.78344 -13.55462 -13.43541 -13.38565 -13.26252 -12.75801 -12.57639 -12.43481 -12.36726 -11.84315 -11.74868 -11.70248 -11.69261 -11.57072 -11.30295 -11.09402 -10.55738 -10.51327 -10.10352 -9.66290 -8.19755 -6.31353 0.41697 1.04160 1.41021 1.42756 1.53772 1.66271 2.12874 2.26937 2.42262 3.13712 3.16225 3.54188 3.59547 4.02077 4.10327 4.11122 4.18289 4.23278 4.50511 4.52673 4.60257 4.70192 4.78854 4.89610 4.91532 4.94994 5.08026 5.14389 5.16462 5.21302 5.25995 5.35170 5.36006 5.46203 5.50799 5.69456 5.83330 6.08011 6.21902 6.41953 6.80378 6.85579 7.10062 7.37991 8.92475 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.047210 B = 0.002645 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.948926 B =10582.766057 C =11030.007694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.002 4.002 3 H 0.112 0.888 4 C -0.103 4.103 5 C -0.053 4.053 6 C -0.193 4.193 7 C -0.022 4.022 8 C 0.593 3.407 9 O -0.571 6.571 10 N -0.704 5.704 11 C 0.129 3.871 12 C -0.102 4.102 13 C 0.025 3.975 14 C -0.542 4.542 15 H 0.065 0.935 16 C -0.003 4.003 17 N -0.935 5.935 18 Si 0.968 3.032 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.261 1.261 22 N -0.259 5.259 23 N -0.344 5.344 24 H 0.462 0.538 25 C 0.001 3.999 26 H 0.046 0.954 27 H 0.089 0.911 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.415 0.585 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.066 0.934 38 H -0.006 1.006 39 H -0.006 1.006 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.970 26.811 12.109 32.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 H 0.130 0.870 4 C -0.141 4.141 5 C -0.091 4.091 6 C -0.203 4.203 7 C -0.180 4.180 8 C 0.379 3.621 9 O -0.449 6.449 10 N -0.355 5.355 11 C 0.006 3.994 12 C -0.140 4.140 13 C -0.013 4.013 14 C -0.580 4.580 15 H 0.083 0.917 16 C -0.201 4.201 17 N -0.575 5.575 18 Si 0.793 3.207 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.185 1.185 22 N -0.096 5.096 23 N -0.059 5.059 24 H 0.310 0.690 25 C -0.127 4.127 26 H 0.065 0.935 27 H 0.108 0.892 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.127 0.873 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.251 0.749 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.013 0.987 39 H 0.013 0.987 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.655 26.206 11.655 31.349 hybrid contribution 0.345 -0.550 -0.877 1.091 sum -12.311 25.656 10.778 30.429 Atomic orbital electron populations 1.21846 0.92292 1.02234 1.03617 1.20434 0.96538 0.99178 0.86073 0.87033 1.22562 1.03006 0.91812 0.96716 1.20517 1.01878 0.99282 0.87461 1.21272 1.06002 0.95445 0.97570 1.21203 1.09672 0.95161 0.91970 1.17327 0.77104 0.84614 0.83103 1.90750 1.57403 1.58329 1.38435 1.45887 1.62964 1.16585 1.10098 1.21342 0.97832 0.82076 0.98169 1.21605 1.00812 0.98411 0.93142 1.18935 0.94650 0.91799 0.95913 1.21667 1.41466 0.99801 0.95049 0.91683 1.26028 0.95658 0.96037 1.02382 1.70108 1.45693 1.06032 1.35649 0.85398 0.78859 0.77317 0.79165 1.19760 1.20883 1.18542 1.73645 1.16351 0.94485 1.25141 1.42679 1.44042 1.12954 1.06230 0.69038 1.22699 1.04230 0.98932 0.86792 0.93518 0.89194 0.91955 0.89617 0.87265 0.91982 0.90613 0.74890 0.92610 0.92630 0.91538 0.91515 0.98731 0.98733 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.15 71.98 0.66 -0.31 16 2 C 0.00 -0.02 3.48 -10.87 -0.04 -0.06 16 3 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16 4 C -0.10 -1.04 6.66 31.61 0.21 -0.83 16 5 C -0.05 -1.05 6.77 30.44 0.21 -0.85 16 6 C -0.19 -4.77 6.83 -19.74 -0.13 -4.90 16 7 C -0.02 -0.64 7.13 42.42 0.30 -0.34 16 8 C 0.59 21.41 7.83 86.75 0.68 22.09 16 9 O -0.57 -24.35 16.93 -3.95 -0.07 -24.42 16 10 N -0.70 -23.88 5.55 -466.10 -2.59 -26.47 16 11 C 0.13 5.02 5.67 86.38 0.49 5.51 16 12 C -0.10 -4.21 5.27 30.59 0.16 -4.05 16 13 C 0.02 1.33 4.97 29.85 0.15 1.48 16 14 C -0.54 -31.08 9.11 25.60 0.23 -30.84 16 15 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 16 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 17 N -0.93 -58.02 13.29 21.44 0.28 -57.73 16 18 Si 0.97 44.67 29.54 68.60 2.03 46.69 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 22 N -0.26 -6.37 11.93 -48.23 -0.58 -6.95 16 23 N -0.34 -5.65 6.84 -47.56 -0.33 -5.98 16 24 H 0.46 3.58 8.96 -220.01 -1.97 1.61 16 25 C 0.00 0.02 7.43 41.47 0.31 0.33 16 26 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 28 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.11 0.61 7.90 -2.39 -0.02 0.59 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 33 H 0.41 12.18 8.20 -92.71 -0.76 11.42 16 34 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.07 2.60 8.14 -2.38 -0.02 2.59 16 37 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 38 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 39 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 40 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -76.57 338.10 0.77 -75.81 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -1.68 Total: 11.56 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: 3.69 Total: -12.52 kcal Atomic # 7 Polarization: -93.92 SS G_CDS: -3.20 Total: -97.12 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.07 Total: -24.42 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -76.57 0.77 -75.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198450009.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.269 kcal (2) G-P(sol) polarization free energy of solvation -76.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds