Wall clock time and date at job start Mon Mar 30 2020 02:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47206 * 2 1 4 4 C 1.50701 * 109.47068 * 240.00369 * 2 1 3 5 5 H 1.08001 * 119.99580 * 265.39721 * 4 2 1 6 6 C 1.37879 * 120.00337 * 85.40194 * 4 2 1 7 7 N 1.31515 * 119.99793 * 185.03923 * 6 4 2 8 8 Si 1.86798 * 119.99637 * 5.03489 * 6 4 2 9 9 H 1.48504 * 109.46969 * 94.80580 * 8 6 4 10 10 H 1.48503 * 109.46741 * 214.80044 * 8 6 4 11 11 H 1.48501 * 109.47511 * 334.80281 * 8 6 4 12 12 C 1.50701 * 109.47332 * 119.99976 * 2 1 3 13 13 O 1.21275 * 120.00098 * 119.99885 * 12 2 1 14 14 N 1.34782 * 119.99860 * 300.00347 * 12 2 1 15 15 C 1.39437 * 119.99586 * 185.20101 * 14 12 2 16 16 C 1.39393 * 120.14776 * 174.76994 * 15 14 12 17 17 C 1.38610 * 117.91329 * 180.02562 * 16 15 14 18 18 C 1.38778 * 118.03194 * 0.02562 * 17 16 15 19 19 C 1.50702 * 120.00166 * 179.97438 * 18 17 16 20 20 C 1.53007 * 109.46818 * 74.99752 * 19 18 17 21 21 C 1.52994 * 109.47189 * 194.99722 * 19 18 17 22 22 C 1.53002 * 109.47149 * 315.00077 * 19 18 17 23 23 N 1.31827 * 119.99782 * 359.97438 * 18 17 16 24 24 N 1.28344 * 122.27323 * 0.02562 * 23 18 17 25 25 H 1.09001 * 109.47425 * 185.02424 * 1 2 3 26 26 H 1.09000 * 109.47227 * 305.02683 * 1 2 3 27 27 H 1.09004 * 109.47226 * 65.02655 * 1 2 3 28 28 H 0.97000 * 119.99488 * 179.97438 * 7 6 4 29 29 H 0.96996 * 120.00023 * 5.19101 * 14 12 2 30 30 H 1.08005 * 121.04291 * 0.02562 * 16 15 14 31 31 H 1.08004 * 120.99008 * 180.02562 * 17 16 15 32 32 H 1.09002 * 109.46973 * 60.00443 * 20 19 18 33 33 H 1.08998 * 109.46667 * 179.97438 * 20 19 18 34 34 H 1.08990 * 109.47069 * 299.99778 * 20 19 18 35 35 H 1.09007 * 109.47129 * 60.00136 * 21 19 18 36 36 H 1.08998 * 109.47482 * 179.97438 * 21 19 18 37 37 H 1.09002 * 109.47550 * 300.00137 * 21 19 18 38 38 H 1.09002 * 109.47198 * 59.99817 * 22 19 18 39 39 H 1.09006 * 109.46856 * 179.97438 * 22 19 18 40 40 H 1.08998 * 109.46729 * 299.99807 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.2830 -1.7598 -1.1836 6 6 2.1719 -0.0205 -2.4161 7 7 2.5148 -0.6604 -3.5128 8 14 1.8737 1.8229 -2.4647 9 1 3.1653 2.5376 -2.3027 10 1 1.2641 2.1915 -3.7677 11 1 0.9549 2.2050 -1.3625 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6964 1.1192 14 7 1.7067 -0.2499 2.4546 15 6 2.2583 -0.8404 3.5910 16 6 2.0104 -0.2993 4.8515 17 6 2.5823 -0.9231 5.9493 18 6 3.3662 -2.0463 5.7262 19 6 4.0099 -2.7588 6.8877 20 6 2.9502 -3.5638 7.6428 21 6 5.0945 -3.7046 6.3682 22 6 4.6383 -1.7314 7.8314 23 7 3.5478 -2.4901 4.4982 24 7 3.0210 -1.9171 3.4776 25 1 -0.3634 -1.0237 0.0900 26 1 -0.3634 0.5898 0.8415 27 1 -0.3634 0.4339 -0.9316 28 1 2.6126 -0.1751 -4.3469 29 1 1.0887 0.4922 2.5450 30 1 1.3921 0.5783 4.9690 31 1 2.4227 -0.5462 6.9487 32 1 2.5026 -4.2958 6.9705 33 1 3.4159 -4.0795 8.4826 34 1 2.1776 -2.8900 8.0129 35 1 5.8495 -3.1311 5.8302 36 1 5.5604 -4.2196 7.2083 37 1 4.6469 -4.4365 5.6959 38 1 3.8655 -1.0576 8.2015 39 1 5.1035 -2.2468 8.6718 40 1 5.3931 -1.1580 7.2934 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261779398.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:34 Heat of formation + Delta-G solvation = 18.749654 kcal Electronic energy + Delta-G solvation = -21346.130471 eV Core-core repulsion = 18161.617927 eV Total energy + Delta-G solvation = -3184.512545 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.19946 -39.13839 -37.09346 -34.66774 -33.77587 -32.72378 -31.43481 -29.92130 -27.60970 -27.44731 -25.27793 -24.62919 -24.45117 -22.35850 -20.11254 -19.59034 -17.89524 -17.18324 -16.79650 -16.17255 -15.50145 -15.25818 -14.53257 -14.39133 -14.19362 -14.16506 -13.72671 -13.40904 -13.29509 -12.64856 -12.48875 -12.42298 -12.25951 -11.89551 -11.77508 -11.57679 -11.28735 -11.14637 -11.10859 -10.78632 -10.73722 -10.68446 -10.39090 -10.08479 -9.82426 -9.40927 -9.19965 -8.66923 -8.58365 -8.34268 -6.09385 -4.09892 0.91695 1.11187 3.12671 3.22195 3.27194 3.31176 3.37897 3.89679 4.08311 4.34859 4.42827 4.54706 4.71750 4.80505 4.84494 4.94560 5.16259 5.20181 5.36135 5.39977 5.53410 5.54969 5.63483 5.73203 5.79462 5.82264 5.86913 6.03597 6.05930 6.11938 6.15977 6.28399 6.36288 6.42976 6.70371 6.80001 7.10378 7.44258 7.77771 8.47064 8.86888 9.08155 9.12853 9.48803 11.03538 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036476 B = 0.003774 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.453440 B = 7418.167656 C = 7722.733859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.002 3.998 3 H 0.057 0.943 4 C -0.503 4.503 5 H 0.090 0.910 6 C 0.074 3.926 7 N -0.891 5.891 8 Si 0.868 3.132 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.260 1.260 12 C 0.505 3.495 13 O -0.453 6.453 14 N -0.665 5.665 15 C 0.305 3.695 16 C -0.162 4.162 17 C -0.089 4.089 18 C 0.032 3.968 19 C -0.009 4.009 20 C -0.138 4.138 21 C -0.133 4.133 22 C -0.141 4.141 23 N -0.206 5.206 24 N -0.229 5.229 25 H 0.052 0.948 26 H 0.025 0.975 27 H 0.060 0.940 28 H 0.265 0.735 29 H 0.413 0.587 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.936 2.899 24.186 24.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.020 4.020 3 H 0.075 0.925 4 C -0.541 4.541 5 H 0.108 0.892 6 C -0.129 4.129 7 N -0.528 5.528 8 Si 0.695 3.305 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.185 1.185 12 C 0.293 3.707 13 O -0.318 6.318 14 N -0.314 5.314 15 C 0.067 3.933 16 C -0.194 4.194 17 C -0.118 4.118 18 C -0.116 4.116 19 C -0.011 4.011 20 C -0.195 4.195 21 C -0.190 4.190 22 C -0.199 4.199 23 N -0.048 5.048 24 N -0.078 5.078 25 H 0.071 0.929 26 H 0.044 0.956 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.249 0.751 30 H 0.165 0.835 31 H 0.164 0.836 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.697 1.087 22.659 22.695 hybrid contribution -1.207 2.683 0.809 3.051 sum -1.904 3.770 23.468 23.845 Atomic orbital electron populations 1.22050 0.96708 1.00752 1.00048 1.19369 0.94038 0.97109 0.91498 0.92518 1.20791 1.43786 0.99050 0.90489 0.89153 1.24985 0.94565 0.97882 0.95432 1.69892 1.47379 1.35932 0.99621 0.87012 0.78941 0.86612 0.77956 1.20291 1.21034 1.18463 1.22138 0.80152 0.85263 0.83172 1.90738 1.32848 1.23285 1.84933 1.44366 1.46679 1.36021 1.04337 1.20537 0.92943 0.92291 0.87515 1.21881 1.03518 1.02533 0.91505 1.21973 0.95154 0.94901 0.99804 1.22637 0.98153 0.95324 0.95448 1.19341 0.95589 0.95165 0.90982 1.21880 0.97909 0.99836 0.99914 1.21731 0.97510 0.99145 1.00644 1.21944 1.00724 0.98402 0.98806 1.73061 1.13529 1.22429 0.95755 1.73804 1.07397 1.05700 1.20864 0.92930 0.95554 0.92124 0.92478 0.75067 0.83486 0.83607 0.92192 0.91749 0.92588 0.92336 0.92719 0.91315 0.92403 0.91690 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 8.62 37.16 0.32 -2.33 16 2 C 0.00 0.04 2.18 -92.92 -0.20 -0.16 16 3 H 0.06 1.23 5.70 -51.93 -0.30 0.93 16 4 C -0.50 -14.34 8.51 -34.44 -0.29 -14.64 16 5 H 0.09 2.96 7.35 -52.49 -0.39 2.57 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.89 -27.32 13.96 55.43 0.77 -26.55 16 8 Si 0.87 20.36 26.37 -169.99 -4.48 15.88 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.26 -5.48 5.99 56.52 0.34 -5.14 16 12 C 0.51 11.25 7.11 -10.98 -0.08 11.17 16 13 O -0.45 -12.21 13.93 5.56 0.08 -12.13 16 14 N -0.67 -11.20 5.32 -11.31 -0.06 -11.26 16 15 C 0.31 5.13 7.51 -154.47 -1.16 3.97 16 16 C -0.16 -1.91 10.07 -39.01 -0.39 -2.30 16 17 C -0.09 -0.96 9.20 -39.24 -0.36 -1.32 16 18 C 0.03 0.42 5.63 -82.39 -0.46 -0.04 16 19 C -0.01 -0.09 0.88 -155.66 -0.14 -0.22 16 20 C -0.14 -1.14 8.41 37.16 0.31 -0.83 16 21 C -0.13 -1.42 7.82 37.15 0.29 -1.13 16 22 C -0.14 -1.06 8.09 37.16 0.30 -0.76 16 23 N -0.21 -3.64 10.20 33.61 0.34 -3.30 16 24 N -0.23 -4.66 9.09 31.28 0.28 -4.38 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.03 0.39 7.60 -51.93 -0.39 -0.01 16 27 H 0.06 1.20 6.95 -51.93 -0.36 0.84 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.41 5.11 8.10 -40.82 -0.33 4.78 16 30 H 0.15 1.14 8.06 -52.48 -0.42 0.72 16 31 H 0.15 1.01 6.81 -52.48 -0.36 0.65 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.85 7.87 -51.93 -0.41 0.44 16 38 H 0.06 0.35 6.76 -51.93 -0.35 0.00 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 327.14 15.07 4.93 4.93 Total: -1.00 -35.70 327.14 -5.98 -41.68 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -5.89 Total: 1.71 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -1.96 Total: -6.58 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 1.34 Total: -45.49 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.08 Total: -12.13 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.48 Total: 15.88 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.70 -5.98 -41.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261779398.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.429 kcal (2) G-P(sol) polarization free energy of solvation -35.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds