Wall clock time and date at job start Mon Mar 30 2020 02:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.45343 * 2 1 4 4 C 1.53107 * 109.46624 * 240.02065 * 2 1 3 5 5 C 1.53388 * 109.65249 * 169.92506 * 4 2 1 6 6 C 1.50716 * 108.34044 * 49.98410 * 5 4 2 7 7 N 1.34313 * 128.90766 * 163.30673 * 6 5 4 8 8 H 0.96995 * 124.97441 * 0.21838 * 7 6 5 9 9 N 1.28842 * 110.03955 * 180.47924 * 7 6 5 10 10 C 1.32204 * 110.15437 * 359.50274 * 9 7 6 11 11 C 1.47704 * 126.68132 * 180.12532 * 10 9 7 12 12 O 1.21572 * 120.00140 * 175.25307 * 11 10 9 13 13 N 1.34778 * 120.00231 * 355.25902 * 11 10 9 14 14 C 1.46504 * 119.99474 * 2.82255 * 13 11 10 15 15 C 1.46501 * 120.00334 * 182.83028 * 13 11 10 16 16 C 1.50695 * 109.47379 * 89.99488 * 15 13 11 17 17 H 1.08005 * 119.99675 * 359.97438 * 16 15 13 18 18 C 1.37876 * 120.00088 * 180.02562 * 16 15 13 19 19 N 1.31517 * 120.00125 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00166 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47268 * 89.99571 * 20 18 16 22 22 H 1.48503 * 109.47255 * 209.99659 * 20 18 16 23 23 H 1.48503 * 109.47252 * 329.99909 * 20 18 16 24 24 C 1.35581 * 123.87419 * 343.42957 * 6 5 4 25 25 C 1.50378 * 124.62604 * 359.68447 * 24 6 5 26 26 H 1.08999 * 109.47227 * 300.01233 * 1 2 3 27 27 H 1.09000 * 109.47583 * 60.02059 * 1 2 3 28 28 H 1.09005 * 109.46509 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.44104 * 289.98145 * 4 2 1 30 30 H 1.09004 * 109.44033 * 49.90470 * 4 2 1 31 31 H 1.09000 * 109.68770 * 290.27552 * 5 4 2 32 32 H 1.08998 * 109.69923 * 169.69939 * 5 4 2 33 33 H 1.08996 * 109.46894 * 83.91529 * 14 13 11 34 34 H 1.08999 * 109.46925 * 203.91640 * 14 13 11 35 35 H 1.09001 * 109.47201 * 323.91062 * 14 13 11 36 36 H 1.09001 * 109.46856 * 209.99506 * 15 13 11 37 37 H 1.08996 * 109.46865 * 329.98954 * 15 13 11 38 38 H 0.96997 * 120.00295 * 180.02562 * 19 18 16 39 39 H 1.08996 * 109.70224 * 103.46990 * 25 24 6 40 40 H 1.09001 * 109.69977 * 224.03480 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0402 -0.7213 -1.2504 5 6 3.5531 -0.5086 -1.3874 6 6 4.2001 -0.8396 -0.0670 7 7 5.4922 -1.0912 0.1997 8 1 6.2062 -1.0882 -0.4568 9 7 5.6432 -1.3424 1.4543 10 6 4.4805 -1.2616 2.0783 11 6 4.2352 -1.4777 3.5187 12 8 3.1273 -1.2876 3.9818 13 7 5.2395 -1.8855 4.3196 14 6 6.5886 -2.0548 3.7741 15 6 4.9821 -2.1596 5.7355 16 6 4.5963 -3.6064 5.9051 17 1 4.5473 -4.2567 5.0442 18 6 4.3049 -4.0997 7.1592 19 7 4.3641 -3.3078 8.2075 20 14 3.8274 -5.8933 7.3696 21 1 5.0477 -6.7061 7.6055 22 1 2.9106 -6.0287 8.5299 23 1 3.1444 -6.3712 6.1406 24 6 3.5224 -0.9366 1.1033 25 6 2.0415 -0.7231 1.2533 26 1 -0.3634 0.5140 0.8899 27 1 -0.3634 0.5135 -0.8901 28 1 -0.3632 -1.0277 0.0005 29 1 1.8300 -1.7875 -1.1654 30 1 1.5370 -0.3214 -2.1307 31 1 3.7559 0.5308 -1.6454 32 1 3.9474 -1.1639 -2.1641 33 1 7.1013 -1.0930 3.7678 34 1 7.1449 -2.7591 4.3927 35 1 6.5233 -2.4386 2.7560 36 1 5.8820 -1.9532 6.3150 37 1 4.1699 -1.5233 6.0869 38 1 4.1595 -3.6549 9.0898 39 1 1.5397 -1.6855 1.3529 40 1 1.8456 -0.1137 2.1356 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262153263.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:15 Heat of formation + Delta-G solvation = 28.795763 kcal Electronic energy + Delta-G solvation = -21813.002620 eV Core-core repulsion = 18628.925707 eV Total energy + Delta-G solvation = -3184.076913 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.65461 -38.46616 -37.55312 -34.68599 -32.80526 -32.30019 -31.47218 -29.63808 -27.64068 -26.49088 -25.68189 -23.93278 -23.41062 -21.87112 -21.01347 -19.04291 -18.31959 -17.57093 -16.43514 -16.04837 -15.73810 -15.10462 -14.74428 -14.41207 -14.14827 -13.91255 -13.66840 -13.28080 -13.08414 -12.57638 -12.42695 -12.21087 -12.09538 -11.99065 -11.86553 -11.64306 -11.14598 -10.91415 -10.86419 -10.66754 -10.55642 -10.44047 -10.20624 -9.99713 -9.55785 -9.02948 -9.01685 -8.46675 -8.37050 -7.49814 -5.97660 -4.02129 1.92437 2.35251 2.96538 3.34950 3.41003 3.46297 4.00858 4.18303 4.46783 4.52611 4.61578 4.69256 4.85630 5.02620 5.18712 5.27471 5.35533 5.40944 5.49039 5.59276 5.66025 5.77344 5.78550 5.93109 5.98374 6.07956 6.15053 6.17498 6.24593 6.42315 6.44754 6.52760 6.74551 7.09213 7.24255 7.52438 7.65353 7.98769 8.07961 8.30637 8.53329 8.96972 9.18053 9.62634 11.10327 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022101 B = 0.004660 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.632632 B = 6007.169861 C = 6655.208257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 H 0.070 0.930 4 C -0.109 4.109 5 C -0.044 4.044 6 C 0.001 3.999 7 N -0.386 5.386 8 H 0.439 0.561 9 N -0.264 5.264 10 C 0.013 3.987 11 C 0.585 3.415 12 O -0.533 6.533 13 N -0.587 5.587 14 C 0.082 3.918 15 C 0.244 3.756 16 C -0.524 4.524 17 H 0.057 0.943 18 C 0.061 3.939 19 N -0.895 5.895 20 Si 0.898 3.102 21 H -0.281 1.281 22 H -0.285 1.285 23 H -0.274 1.274 24 C -0.145 4.145 25 C -0.037 4.037 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.041 0.959 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.034 0.966 37 H 0.046 0.954 38 H 0.263 0.737 39 H 0.075 0.925 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.321 6.765 -21.413 22.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 H 0.089 0.911 4 C -0.147 4.147 5 C -0.083 4.083 6 C -0.126 4.126 7 N -0.098 5.098 8 H 0.283 0.717 9 N -0.099 5.099 10 C -0.147 4.147 11 C 0.370 3.630 12 O -0.409 6.409 13 N -0.318 5.318 14 C -0.062 4.062 15 C 0.125 3.875 16 C -0.563 4.563 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.535 5.535 20 Si 0.726 3.274 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.155 4.155 25 C -0.076 4.076 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.182 6.641 -20.686 21.726 hybrid contribution -0.337 -0.949 -0.279 1.045 sum -0.155 5.692 -20.965 21.724 Atomic orbital electron populations 1.21813 0.94860 1.02034 1.01646 1.21260 0.95672 0.99639 0.94541 0.91112 1.21626 0.93327 1.01589 0.98188 1.20172 0.95534 1.01743 0.90847 1.21083 0.85246 1.08304 0.97994 1.43118 1.07852 1.51308 1.07486 0.71743 1.74119 1.24770 1.20096 0.90927 1.22088 0.89655 1.06892 0.96049 1.16906 0.84926 0.78603 0.82601 1.90738 1.22916 1.52807 1.74436 1.48028 1.08015 1.63539 1.12196 1.21904 0.83848 1.00387 1.00084 1.19350 0.97688 0.96738 0.73683 1.21449 1.46531 0.95084 0.93257 0.92447 1.24925 0.95369 0.98068 0.95711 1.69937 1.49245 1.35360 0.98911 0.86497 0.78349 0.84829 0.77753 1.20680 1.21080 1.19904 1.19878 0.97245 1.07612 0.90748 1.20035 0.88650 1.01172 0.97699 0.92273 0.92908 0.92511 0.91312 0.91124 0.90234 0.90609 0.94047 0.91412 0.90075 0.94816 0.93593 0.92760 0.90646 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.16 37.16 0.34 -1.01 16 2 C -0.09 -0.97 2.70 -90.32 -0.24 -1.21 16 3 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 4 C -0.11 -0.93 5.19 -26.48 -0.14 -1.07 16 5 C -0.04 -0.36 6.31 -27.67 -0.17 -0.53 16 6 C 0.00 0.01 7.12 -82.45 -0.59 -0.58 16 7 N -0.39 -4.60 6.82 33.42 0.23 -4.37 16 8 H 0.44 3.30 8.96 -190.22 -1.71 1.60 16 9 N -0.26 -4.25 8.79 33.28 0.29 -3.96 16 10 C 0.01 0.26 6.81 -82.99 -0.57 -0.31 16 11 C 0.59 13.78 7.68 -12.39 -0.10 13.68 16 12 O -0.53 -14.12 15.32 5.30 0.08 -14.04 16 13 N -0.59 -13.90 2.86 -184.13 -0.53 -14.43 16 14 C 0.08 1.57 9.62 59.85 0.58 2.14 16 15 C 0.24 6.75 5.15 -5.20 -0.03 6.72 16 16 C -0.52 -15.46 9.39 -34.44 -0.32 -15.79 16 17 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 18 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 19 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 20 Si 0.90 22.40 29.54 -169.99 -5.02 17.38 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 24 C -0.14 -2.33 5.99 -104.88 -0.63 -2.96 16 25 C -0.04 -0.55 4.89 -27.80 -0.14 -0.69 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 30 H 0.07 0.46 8.11 -51.93 -0.42 0.04 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 1.28 8.03 -51.93 -0.42 0.86 16 35 H 0.08 1.45 5.37 -51.93 -0.28 1.18 16 36 H 0.03 0.93 8.07 -51.93 -0.42 0.51 16 37 H 0.05 1.40 7.38 -51.93 -0.38 1.02 16 38 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.08 1.17 8.12 -51.93 -0.42 0.74 16 40 H 0.09 1.45 7.59 -51.93 -0.39 1.06 16 LS Contribution 326.24 15.07 4.92 4.92 Total: -1.00 -34.86 326.24 -8.76 -43.61 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -7.36 Total: -2.75 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -2.10 Total: 0.10 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: 0.73 Total: -49.21 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.08 Total: -14.04 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.86 -8.76 -43.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262153263.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.406 kcal (2) G-P(sol) polarization free energy of solvation -34.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds