Wall clock time and date at job start Mon Mar 30 2020 02:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46517 * 2 1 4 4 C 1.53106 * 109.46115 * 119.98162 * 2 1 3 5 5 C 1.53406 * 109.65012 * 190.04763 * 4 2 1 6 6 C 1.50717 * 108.36659 * 309.96477 * 5 4 2 7 7 N 1.34235 * 128.96678 * 196.67612 * 6 5 4 8 8 H 0.97007 * 124.95197 * 359.88257 * 7 6 5 9 9 N 1.28837 * 110.06922 * 179.86262 * 7 6 5 10 10 C 1.32208 * 110.14870 * 0.08422 * 9 7 6 11 11 C 1.47715 * 126.67621 * 180.02562 * 10 9 7 12 12 O 1.21569 * 119.99747 * 174.94023 * 11 10 9 13 13 N 1.34772 * 120.00220 * 354.93812 * 11 10 9 14 14 C 1.46503 * 120.00150 * 2.80525 * 13 11 10 15 15 C 1.46498 * 120.00309 * 182.80236 * 13 11 10 16 16 C 1.50702 * 109.47127 * 90.00230 * 15 13 11 17 17 H 1.07995 * 119.99823 * 0.02562 * 16 15 13 18 18 C 1.37879 * 119.99920 * 180.02562 * 16 15 13 19 19 N 1.31510 * 120.00309 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99745 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47208 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47082 * 119.99750 * 20 18 16 23 23 H 1.48504 * 109.46956 * 239.99759 * 20 18 16 24 24 C 1.35662 * 123.81747 * 16.69630 * 6 5 4 25 25 C 1.50374 * 124.64208 * 0.16350 * 24 6 5 26 26 H 1.08996 * 109.47342 * 300.01550 * 1 2 3 27 27 H 1.09000 * 109.46691 * 60.02019 * 1 2 3 28 28 H 1.09003 * 109.46922 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.44019 * 69.99473 * 4 2 1 30 30 H 1.08997 * 109.41596 * 310.08346 * 4 2 1 31 31 H 1.09004 * 109.68688 * 69.69041 * 5 4 2 32 32 H 1.08994 * 109.69240 * 190.23599 * 5 4 2 33 33 H 1.09005 * 109.47268 * 83.91527 * 14 13 11 34 34 H 1.08994 * 109.47683 * 203.92014 * 14 13 11 35 35 H 1.09004 * 109.46902 * 323.92306 * 14 13 11 36 36 H 1.08997 * 109.47120 * 210.00353 * 15 13 11 37 37 H 1.09005 * 109.47195 * 329.99928 * 15 13 11 38 38 H 0.96993 * 120.00321 * 180.02562 * 19 18 16 39 39 H 1.09006 * 109.70170 * 256.60297 * 25 24 6 40 40 H 1.09002 * 109.73094 * 136.02575 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7214 1.2504 5 6 3.5533 -0.5093 1.3871 6 6 4.2006 -0.8418 0.0673 7 7 5.4917 -1.0938 -0.1999 8 1 6.2058 -1.0917 0.4566 9 7 5.6436 -1.3392 -1.4555 10 6 4.4800 -1.2625 -2.0785 11 6 4.2347 -1.4775 -3.5192 12 8 3.0981 -1.4667 -3.9505 13 7 5.2709 -1.6855 -4.3556 14 6 6.6353 -1.7597 -3.8272 15 6 5.0329 -1.8375 -5.7931 16 6 5.0942 -0.4865 -6.4580 17 1 5.2912 0.3969 -5.8688 18 6 4.8988 -0.3782 -7.8186 19 7 4.6595 -1.4540 -8.5362 20 14 4.9755 1.2963 -8.6428 21 1 5.2575 2.3378 -7.6226 22 1 6.0548 1.2970 -9.6629 23 1 3.6747 1.5854 -9.2982 24 6 3.5222 -0.9369 -1.1036 25 6 2.0413 -0.7231 -1.2534 26 1 -0.3634 0.5140 0.8898 27 1 -0.3633 0.5135 -0.8902 28 1 -0.3633 -1.0277 0.0005 29 1 1.8294 -1.7874 1.1655 30 1 1.5367 -0.3210 2.1304 31 1 3.7566 0.5303 1.6444 32 1 3.9471 -1.1638 2.1646 33 1 6.8328 -2.7710 -3.4717 34 1 7.3444 -1.5066 -4.6152 35 1 6.7437 -1.0567 -3.0012 36 1 5.7957 -2.4879 -6.2209 37 1 4.0486 -2.2773 -5.9539 38 1 4.5224 -1.3779 -9.4934 39 1 1.5392 -1.6855 -1.3530 40 1 1.8449 -0.1133 -2.1353 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262153264.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:18 Heat of formation + Delta-G solvation = 28.740700 kcal Electronic energy + Delta-G solvation = -21814.626453 eV Core-core repulsion = 18630.547153 eV Total energy + Delta-G solvation = -3184.079300 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.65769 -38.46720 -37.55209 -34.68629 -32.80796 -32.30206 -31.47028 -29.63885 -27.64254 -26.49005 -25.68274 -23.93437 -23.41330 -21.87223 -21.01249 -19.04453 -18.30875 -17.57099 -16.45941 -16.11042 -15.65470 -15.12597 -14.71603 -14.40348 -14.15331 -13.95770 -13.64522 -13.27997 -13.08753 -12.55439 -12.43692 -12.23446 -12.08617 -12.00245 -11.89234 -11.60673 -11.15273 -10.92070 -10.84184 -10.66909 -10.56156 -10.44197 -10.20624 -10.00302 -9.54430 -9.05708 -8.99505 -8.46464 -8.37544 -7.49760 -5.97912 -4.02323 1.92510 2.35219 2.96454 3.34328 3.41426 3.46479 4.00616 4.18485 4.46609 4.52508 4.61606 4.69168 4.85500 5.02660 5.18813 5.27771 5.35371 5.40822 5.49127 5.59286 5.65989 5.77361 5.78273 5.92440 5.98150 6.08057 6.15158 6.17875 6.24435 6.42384 6.44805 6.52589 6.74331 7.09176 7.24169 7.52372 7.65432 7.98664 8.07926 8.30468 8.53301 8.97102 9.18070 9.62531 11.10115 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022155 B = 0.004682 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.538376 B = 5978.731726 C = 6672.044058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 H 0.071 0.929 4 C -0.109 4.109 5 C -0.044 4.044 6 C 0.001 3.999 7 N -0.386 5.386 8 H 0.439 0.561 9 N -0.264 5.264 10 C 0.014 3.986 11 C 0.585 3.415 12 O -0.533 6.533 13 N -0.587 5.587 14 C 0.082 3.918 15 C 0.244 3.756 16 C -0.524 4.524 17 H 0.058 0.942 18 C 0.061 3.939 19 N -0.895 5.895 20 Si 0.898 3.102 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.283 1.283 24 C -0.145 4.145 25 C -0.036 4.036 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.041 0.959 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.034 0.966 37 H 0.046 0.954 38 H 0.262 0.738 39 H 0.075 0.925 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.189 1.286 22.405 22.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 H 0.089 0.911 4 C -0.147 4.147 5 C -0.083 4.083 6 C -0.126 4.126 7 N -0.097 5.097 8 H 0.283 0.717 9 N -0.100 5.100 10 C -0.147 4.147 11 C 0.369 3.631 12 O -0.409 6.409 13 N -0.318 5.318 14 C -0.062 4.062 15 C 0.125 3.875 16 C -0.563 4.563 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.726 3.274 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.155 4.155 25 C -0.074 4.074 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.706 0.997 21.710 21.744 hybrid contribution -0.033 1.028 -0.081 1.032 sum -0.739 2.026 21.629 21.737 Atomic orbital electron populations 1.21810 0.94853 1.01975 1.01690 1.21269 0.95684 0.99716 0.94539 0.91078 1.21621 0.93317 1.01521 0.98196 1.20175 0.95528 1.01772 0.90837 1.21085 0.85270 1.08279 0.98007 1.43094 1.07838 1.51431 1.07318 0.71744 1.74127 1.24458 1.20632 0.90739 1.22092 0.89546 1.07020 0.96004 1.16906 0.85365 0.78388 0.82394 1.90740 1.21691 1.52138 1.76319 1.48024 1.05771 1.68232 1.09745 1.21901 0.83777 1.00902 0.99626 1.19357 0.98356 0.97276 0.72514 1.21489 1.48670 0.93433 0.92669 0.92385 1.24927 0.95101 0.96886 0.97179 1.69944 1.48779 1.27985 1.06734 0.86445 0.77631 0.84102 0.79270 1.19827 1.20995 1.20858 1.19895 0.97254 1.07660 0.90720 1.20015 0.88641 1.01089 0.97670 0.92907 0.92251 0.92544 0.91343 0.91126 0.90224 0.90616 0.94045 0.91412 0.90095 0.94805 0.93591 0.92814 0.90633 0.89658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.16 37.16 0.34 -1.01 16 2 C -0.09 -0.99 2.70 -90.32 -0.24 -1.23 16 3 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 4 C -0.11 -0.91 5.19 -26.47 -0.14 -1.05 16 5 C -0.04 -0.36 6.31 -27.66 -0.17 -0.53 16 6 C 0.00 0.01 7.13 -82.45 -0.59 -0.58 16 7 N -0.39 -4.59 6.82 33.42 0.23 -4.36 16 8 H 0.44 3.30 8.96 -190.21 -1.71 1.60 16 9 N -0.26 -4.26 8.79 33.28 0.29 -3.96 16 10 C 0.01 0.26 6.81 -82.98 -0.57 -0.31 16 11 C 0.59 13.77 7.68 -12.39 -0.10 13.68 16 12 O -0.53 -14.12 15.44 5.31 0.08 -14.04 16 13 N -0.59 -13.90 2.86 -184.12 -0.53 -14.42 16 14 C 0.08 1.57 9.62 59.85 0.58 2.14 16 15 C 0.24 6.73 5.15 -5.19 -0.03 6.71 16 16 C -0.52 -15.44 9.39 -34.44 -0.32 -15.76 16 17 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 18 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 19 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 20 Si 0.90 22.39 29.54 -169.99 -5.02 17.37 16 21 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 24 C -0.15 -2.34 5.99 -104.85 -0.63 -2.96 16 25 C -0.04 -0.53 4.81 -27.80 -0.13 -0.67 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 30 H 0.07 0.46 8.11 -51.93 -0.42 0.03 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 1.28 8.03 -51.93 -0.42 0.86 16 35 H 0.08 1.45 5.38 -51.93 -0.28 1.17 16 36 H 0.03 0.94 8.07 -51.93 -0.42 0.52 16 37 H 0.05 1.40 7.38 -51.93 -0.38 1.02 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.08 1.13 8.12 -51.93 -0.42 0.71 16 40 H 0.08 1.46 7.78 -51.93 -0.40 1.06 16 LS Contribution 326.49 15.07 4.92 4.92 Total: -1.00 -34.88 326.49 -8.76 -43.63 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -7.37 Total: -2.81 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -2.10 Total: 0.11 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: 0.73 Total: -49.19 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.08 Total: -14.04 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.88 -8.76 -43.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262153264.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.376 kcal (2) G-P(sol) polarization free energy of solvation -34.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds