Wall clock time and date at job start Mon Mar 30 2020 02:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47162 * 2 1 4 4 C 1.50697 * 109.47186 * 119.99894 * 2 1 3 5 5 O 1.21285 * 120.00415 * 119.99822 * 4 2 1 6 6 N 1.34780 * 120.00251 * 300.00303 * 4 2 1 7 7 C 1.46499 * 120.00448 * 180.02562 * 6 4 2 8 8 C 1.52992 * 109.47117 * 179.97438 * 7 6 4 9 9 N 1.46509 * 109.46899 * 179.97438 * 8 7 6 10 10 C 1.46497 * 119.99947 * 269.99450 * 9 8 7 11 11 C 1.36932 * 119.99903 * 90.00349 * 9 8 7 12 12 H 1.08002 * 120.00675 * 22.33889 * 11 9 8 13 13 C 1.38810 * 119.99607 * 202.34701 * 11 9 8 14 14 N 1.31614 * 120.00688 * 11.33798 * 13 11 9 15 15 Si 1.86809 * 119.99936 * 191.33952 * 13 11 9 16 16 H 1.48506 * 109.46767 * 89.99655 * 15 13 11 17 17 H 1.48492 * 109.47340 * 209.99755 * 15 13 11 18 18 H 1.48493 * 109.46986 * 330.00216 * 15 13 11 19 19 C 1.50696 * 109.47134 * 239.99675 * 2 1 3 20 20 C 1.38675 * 120.41787 * 119.99649 * 19 2 1 21 21 C 1.38625 * 118.42308 * 179.97438 * 20 19 2 22 22 C 1.38228 * 119.16038 * 0.02562 * 21 20 19 23 23 N 1.31854 * 120.76610 * 359.97438 * 22 21 20 24 24 C 1.31898 * 121.72162 * 359.70818 * 23 22 21 25 25 H 1.09005 * 109.46945 * 299.99770 * 1 2 3 26 26 H 1.08998 * 109.47176 * 60.00268 * 1 2 3 27 27 H 1.09007 * 109.46940 * 180.02562 * 1 2 3 28 28 H 0.97005 * 119.99642 * 359.97438 * 6 4 2 29 29 H 1.09004 * 109.46490 * 299.99577 * 7 6 4 30 30 H 1.08997 * 109.47015 * 59.99262 * 7 6 4 31 31 H 1.09004 * 109.47262 * 299.99308 * 8 7 6 32 32 H 1.08997 * 109.47614 * 59.99832 * 8 7 6 33 33 H 1.09001 * 109.46780 * 94.21497 * 10 9 8 34 34 H 1.08998 * 109.47631 * 214.21086 * 10 9 8 35 35 H 1.09002 * 109.47194 * 334.21826 * 10 9 8 36 36 H 0.96997 * 120.00870 * 180.02562 * 14 13 11 37 37 H 1.08001 * 120.79028 * 359.97438 * 20 19 2 38 38 H 1.07996 * 120.42270 * 180.02562 * 21 20 19 39 39 H 1.08003 * 119.61680 * 179.97438 * 22 21 20 40 40 H 1.08000 * 119.61683 * 180.30976 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1193 6 7 1.7068 -0.2500 2.4546 7 6 2.1955 -0.9402 3.6508 8 6 1.6859 -0.2186 4.8999 9 7 2.1743 -0.9093 6.0962 10 6 1.3822 -1.9867 6.6945 11 6 3.3709 -0.5476 6.6550 12 1 3.7789 0.4349 6.4689 13 6 4.0597 -1.4439 7.4607 14 7 3.6866 -2.7051 7.5106 15 14 5.5162 -0.8600 8.4742 16 1 5.0425 -0.4089 9.8074 17 1 6.4809 -1.9762 8.6433 18 1 6.1830 0.2693 7.7777 19 6 2.0324 -0.7105 -1.2304 20 6 2.8301 -0.0449 -2.1490 21 6 3.2696 -0.7384 -3.2659 22 6 2.9003 -2.0608 -3.4261 23 7 2.1402 -2.6619 -2.5319 24 6 1.7090 -2.0351 -1.4544 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.1493 0.5389 2.5436 29 1 1.8325 -1.9680 3.6509 30 1 3.2855 -0.9398 3.6506 31 1 2.0493 0.8091 4.8996 32 1 0.5959 -0.2187 4.9004 33 1 1.7213 -2.9465 6.3046 34 1 1.5059 -1.9704 7.7774 35 1 0.3302 -1.8451 6.4468 36 1 4.1677 -3.3313 8.0738 37 1 3.1025 0.9892 -1.9978 38 1 3.8926 -0.2518 -4.0016 39 1 3.2382 -2.6080 -4.2937 40 1 1.0921 -2.5619 -0.7414 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266350467.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:12 Heat of formation + Delta-G solvation = -7.320194 kcal Electronic energy + Delta-G solvation = -20951.260594 eV Core-core repulsion = 17765.617576 eV Total energy + Delta-G solvation = -3185.643018 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.60605 -40.30559 -37.87174 -35.73597 -35.58804 -33.30513 -33.01023 -30.90169 -29.48848 -27.93551 -26.06522 -25.05846 -24.47890 -23.21272 -22.37637 -20.98459 -18.81147 -18.26256 -18.07332 -17.22320 -17.08554 -16.68637 -16.39765 -15.82202 -15.49745 -15.13823 -15.03864 -14.69570 -14.56861 -14.25871 -14.09371 -13.94221 -13.53188 -13.23401 -13.10848 -12.81921 -12.65443 -12.48569 -12.44590 -12.26204 -12.08810 -12.01578 -11.76250 -10.94212 -10.68281 -10.62706 -10.37912 -10.05856 -9.89809 -8.87355 -7.85900 -5.35696 0.17224 0.38206 1.46016 1.46883 1.55836 1.65192 2.19107 2.51475 2.91670 3.29739 3.41788 3.64220 3.72776 3.86350 4.03252 4.07166 4.15980 4.23569 4.25222 4.35224 4.42550 4.65321 4.67514 4.82050 4.84046 4.90294 4.93220 5.07169 5.16197 5.20122 5.23615 5.31678 5.36099 5.48812 5.62244 5.71576 5.80564 6.30002 6.62599 7.05562 7.11699 7.32383 7.82914 8.25054 9.17773 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027114 B = 0.003341 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.431195 B = 8379.664204 C = 8710.236361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.055 4.055 3 H 0.141 0.859 4 C 0.506 3.494 5 O -0.590 6.590 6 N -0.706 5.706 7 C 0.116 3.884 8 C 0.147 3.853 9 N -0.615 5.615 10 C 0.175 3.825 11 C -0.267 4.267 12 H 0.078 0.922 13 C -0.056 4.056 14 N -0.940 5.940 15 Si 0.971 3.029 16 H -0.282 1.282 17 H -0.299 1.299 18 H -0.267 1.267 19 C -0.128 4.128 20 C -0.072 4.072 21 C -0.170 4.170 22 C 0.077 3.923 23 N -0.523 5.523 24 C 0.107 3.893 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.048 0.952 28 H 0.418 0.582 29 H 0.030 0.970 30 H 0.026 0.974 31 H 0.067 0.933 32 H 0.076 0.924 33 H -0.004 1.004 34 H 0.022 0.978 35 H 0.037 0.963 36 H 0.247 0.753 37 H 0.167 0.833 38 H 0.170 0.830 39 H 0.176 0.824 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.456 11.637 -20.263 24.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.076 4.076 3 H 0.159 0.841 4 C 0.293 3.707 5 O -0.470 6.470 6 N -0.358 5.358 7 C -0.011 4.011 8 C 0.020 3.980 9 N -0.338 5.338 10 C 0.030 3.970 11 C -0.397 4.397 12 H 0.096 0.904 13 C -0.251 4.251 14 N -0.587 5.587 15 Si 0.799 3.201 16 H -0.208 1.208 17 H -0.226 1.226 18 H -0.191 1.191 19 C -0.131 4.131 20 C -0.098 4.098 21 C -0.190 4.190 22 C -0.079 4.079 23 N -0.232 5.232 24 C -0.050 4.050 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.067 0.933 28 H 0.256 0.744 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.015 0.985 34 H 0.040 0.960 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.184 0.816 38 H 0.187 0.813 39 H 0.194 0.806 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.155 9.942 -20.327 23.732 hybrid contribution 1.116 0.379 1.063 1.588 sum -6.039 10.321 -19.263 22.673 Atomic orbital electron populations 1.21841 0.89754 1.02952 1.05009 1.20288 0.99307 1.00793 0.87248 0.84101 1.21287 0.79508 0.84230 0.85711 1.90739 1.40039 1.28834 1.87411 1.45851 1.53150 1.32212 1.04634 1.21892 0.97651 0.96064 0.85498 1.21152 0.98159 0.95365 0.83327 1.44185 1.21168 1.41016 1.27470 1.20599 0.90565 0.89658 0.96219 1.19625 0.97759 0.97162 1.25134 0.90442 1.25877 1.01164 0.95094 1.02939 1.70249 1.43275 1.02882 1.42279 0.85208 0.78892 0.77054 0.78947 1.20828 1.22590 1.19124 1.20540 1.00015 0.95448 0.97050 1.21917 0.93439 1.01706 0.92723 1.22490 1.01388 0.95617 0.99464 1.23296 0.93377 0.93587 0.97642 1.67648 1.12057 1.39848 1.03645 1.22444 0.96933 0.92126 0.93448 0.89235 0.89206 0.93307 0.74429 0.95184 0.95539 0.91508 0.90547 0.98520 0.95959 0.94470 0.94331 0.81552 0.81280 0.80649 0.85024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.91 71.98 0.64 -1.16 16 2 C -0.05 -1.00 2.92 -12.29 -0.04 -1.03 16 3 H 0.14 1.59 7.93 -2.39 -0.02 1.57 16 4 C 0.51 14.78 7.03 87.66 0.62 15.39 16 5 O -0.59 -24.41 15.10 -3.05 -0.05 -24.46 16 6 N -0.71 -19.01 5.45 -463.07 -2.52 -21.53 16 7 C 0.12 4.46 6.00 86.38 0.52 4.98 16 8 C 0.15 5.40 5.82 86.37 0.50 5.91 16 9 N -0.62 -30.38 2.93 -726.94 -2.13 -32.51 16 10 C 0.17 8.65 9.01 127.77 1.15 9.80 16 11 C -0.27 -14.54 9.67 84.03 0.81 -13.73 16 12 H 0.08 4.02 7.84 -2.91 -0.02 4.00 16 13 C -0.06 -3.16 5.13 84.86 0.44 -2.73 16 14 N -0.94 -56.95 10.58 21.65 0.23 -56.72 16 15 Si 0.97 45.48 29.57 68.60 2.03 47.51 16 16 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 17 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 19 C -0.13 -2.87 4.41 -19.78 -0.09 -2.96 16 20 C -0.07 -1.24 9.81 22.47 0.22 -1.02 16 21 C -0.17 -2.76 10.11 22.36 0.23 -2.53 16 22 C 0.08 1.63 11.18 84.69 0.95 2.57 16 23 N -0.52 -14.95 10.36 -195.83 -2.03 -16.98 16 24 C 0.11 3.03 9.12 84.67 0.77 3.80 16 25 H 0.09 0.81 7.56 -2.38 -0.02 0.79 16 26 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.05 0.81 7.43 -2.38 -0.02 0.79 16 28 H 0.42 7.34 7.89 -92.70 -0.73 6.61 16 29 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 2.24 8.03 -2.39 -0.02 2.22 16 32 H 0.08 2.32 7.86 -2.39 -0.02 2.30 16 33 H 0.00 -0.20 7.42 -2.39 -0.02 -0.22 16 34 H 0.02 1.18 7.19 -2.39 -0.02 1.16 16 35 H 0.04 1.51 7.84 -2.39 -0.02 1.49 16 36 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 37 H 0.17 1.65 8.00 -2.91 -0.02 1.63 16 38 H 0.17 1.45 8.06 -2.91 -0.02 1.42 16 39 H 0.18 2.58 8.06 -2.91 -0.02 2.56 16 40 H 0.13 3.98 7.53 -2.91 -0.02 3.96 16 Total: -1.00 -79.30 335.82 2.55 -76.75 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.30 Total: 10.65 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: 6.72 Total: 17.29 kcal Atomic # 7 Polarization: -121.30 SS G_CDS: -6.45 Total: -127.75 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.05 Total: -24.46 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -79.30 2.55 -76.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266350467.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.430 kcal (2) G-P(sol) polarization free energy of solvation -79.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds