Wall clock time and date at job start Mon Mar 30 2020 02:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47177 * 2 1 4 4 N 1.46498 * 109.47209 * 240.00546 * 2 1 3 5 5 C 1.36939 * 120.00488 * 84.99582 * 4 2 1 6 6 H 1.08001 * 119.99725 * 0.02562 * 5 4 2 7 7 C 1.38805 * 120.00062 * 180.02562 * 5 4 2 8 8 N 1.31619 * 120.00286 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99861 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46964 * 90.00349 * 9 7 5 11 11 H 1.48503 * 109.47309 * 210.00090 * 9 7 5 12 12 H 1.48497 * 109.47267 * 330.00379 * 9 7 5 13 13 C 1.53000 * 109.47492 * 119.99827 * 2 1 3 14 14 H 1.08998 * 109.46967 * 184.99887 * 13 2 1 15 15 C 1.53004 * 109.46677 * 65.00167 * 13 2 1 16 16 N 1.46494 * 109.47444 * 305.00226 * 13 2 1 17 17 C 1.34771 * 120.00427 * 204.99436 * 16 13 2 18 18 O 1.21782 * 119.99539 * 0.02562 * 17 16 13 19 19 C 1.41513 * 120.00511 * 179.97438 * 17 16 13 20 20 C 1.35614 * 120.00410 * 186.57413 * 19 17 16 21 21 C 1.41678 * 119.99811 * 8.10799 * 20 19 17 22 22 C 1.38281 * 126.25503 * 217.65524 * 21 20 19 23 23 C 1.39786 * 107.07632 * 179.88076 * 22 21 20 24 24 C 1.35505 * 107.90797 * 0.38615 * 23 22 21 25 25 N 1.35749 * 108.91128 * 359.75563 * 24 23 22 26 26 H 0.97003 * 125.69442 * 179.97438 * 25 24 23 27 27 H 1.08993 * 109.46901 * 59.99902 * 1 2 3 28 28 H 1.09001 * 109.46636 * 299.99859 * 1 2 3 29 29 H 1.08999 * 109.46595 * 179.97438 * 1 2 3 30 30 H 0.97004 * 119.99760 * 264.99568 * 4 2 1 31 31 H 0.97000 * 119.99978 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.46893 * 60.00081 * 15 13 2 33 33 H 1.09002 * 109.46899 * 179.97438 * 15 13 2 34 34 H 1.08995 * 109.46965 * 300.00313 * 15 13 2 35 35 H 0.97003 * 119.99574 * 24.99867 * 16 13 2 36 36 H 1.08009 * 119.99614 * 6.57645 * 19 17 16 37 37 H 1.08004 * 120.00031 * 188.11352 * 20 19 17 38 38 H 1.08000 * 126.46308 * 0.02562 * 22 21 20 39 39 H 1.07999 * 126.04657 * 180.10827 * 23 22 21 40 40 H 1.08002 * 125.54185 * 179.74141 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1491 -0.0073 -2.3758 6 1 1.8926 1.0406 -2.4242 7 6 2.6113 -0.6618 -3.5093 8 7 2.9235 -1.9391 -3.4505 9 14 2.7890 0.2700 -5.1186 10 1 4.1513 0.8550 -5.2040 11 1 2.5781 -0.6614 -6.2558 12 1 1.7790 1.3571 -5.1753 13 6 2.0401 -0.7212 1.2492 14 1 3.1264 -0.6442 1.2950 15 6 1.6354 -2.1955 1.1879 16 7 1.4560 -0.1037 2.4424 17 6 2.0914 -0.1938 3.6275 18 8 3.1513 -0.7883 3.7064 19 6 1.5274 0.4031 4.7800 20 6 2.2268 0.4289 5.9416 21 6 3.5820 0.0161 5.9618 22 6 4.2059 -0.6930 6.9718 23 6 5.5332 -0.8862 6.5782 24 6 5.6986 -0.2994 5.3681 25 7 4.5200 0.2527 4.9820 26 1 4.3647 0.7340 4.1543 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 2.2491 -1.6317 -1.1527 31 1 3.2461 -2.3964 -4.2427 32 1 2.0700 -2.6549 0.3001 33 1 1.9991 -2.7094 2.0777 34 1 0.5491 -2.2724 1.1420 35 1 0.6119 0.3701 2.3794 36 1 0.5399 0.8382 4.7344 37 1 1.7507 0.7640 6.8513 38 1 3.7525 -1.0352 7.8903 39 1 6.2937 -1.4068 7.1413 40 1 6.6185 -0.2747 4.8028 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275388367.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:10 Heat of formation + Delta-G solvation = 40.171957 kcal Electronic energy + Delta-G solvation = -21414.400100 eV Core-core repulsion = 18230.816496 eV Total energy + Delta-G solvation = -3183.583604 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.13490 -40.70544 -38.48632 -35.62081 -34.60767 -33.55345 -31.68660 -31.16058 -29.83341 -28.96854 -26.20342 -25.58328 -23.93728 -21.90462 -21.14342 -20.74139 -20.48380 -19.51198 -18.97620 -17.48414 -16.67066 -16.49135 -16.08658 -15.77888 -15.54987 -15.13241 -15.03173 -14.59629 -14.45716 -14.12028 -13.94816 -13.72555 -13.50643 -13.11311 -13.04050 -13.02392 -12.81175 -12.77775 -12.64687 -12.15067 -12.02189 -11.68389 -11.59807 -10.97435 -10.88094 -10.75076 -10.08236 -9.50290 -9.05183 -8.48637 -7.95534 -5.24638 -0.14496 1.46812 1.48179 1.56461 1.74649 2.12905 2.32228 2.52648 2.59601 2.70872 3.38451 3.84795 3.96745 4.05670 4.10501 4.20627 4.31798 4.42244 4.58340 4.58832 4.65476 4.69370 4.72448 4.85647 4.94839 4.99136 5.12490 5.17607 5.22183 5.26351 5.45456 5.48970 5.51945 5.60790 5.61717 6.15689 6.26545 6.33506 6.68165 6.79478 7.32914 7.35752 8.07588 8.30224 9.28053 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027282 B = 0.003682 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.090132 B = 7602.785351 C = 8104.998513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.166 3.834 3 H 0.047 0.953 4 N -0.735 5.735 5 C -0.239 4.239 6 H 0.078 0.922 7 C -0.075 4.075 8 N -0.970 5.970 9 Si 0.972 3.028 10 H -0.289 1.289 11 H -0.297 1.297 12 H -0.267 1.267 13 C 0.154 3.846 14 H 0.055 0.945 15 C -0.147 4.147 16 N -0.703 5.703 17 C 0.529 3.471 18 O -0.582 6.582 19 C -0.248 4.248 20 C 0.028 3.972 21 C -0.003 4.003 22 C -0.176 4.176 23 C -0.233 4.233 24 C -0.005 4.005 25 N -0.504 5.504 26 H 0.412 0.588 27 H 0.041 0.959 28 H 0.078 0.922 29 H 0.049 0.951 30 H 0.375 0.625 31 H 0.250 0.750 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.412 0.588 36 H 0.168 0.832 37 H 0.182 0.818 38 H 0.154 0.846 39 H 0.146 0.854 40 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.935 7.037 21.349 22.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.057 3.943 3 H 0.065 0.935 4 N -0.377 5.377 5 C -0.371 4.371 6 H 0.096 0.904 7 C -0.267 4.267 8 N -0.621 5.621 9 Si 0.801 3.199 10 H -0.217 1.217 11 H -0.224 1.224 12 H -0.192 1.192 13 C 0.048 3.952 14 H 0.074 0.926 15 C -0.206 4.206 16 N -0.356 5.356 17 C 0.321 3.679 18 O -0.465 6.465 19 C -0.269 4.269 20 C 0.008 3.992 21 C -0.116 4.116 22 C -0.201 4.201 23 C -0.257 4.257 24 C -0.143 4.143 25 N -0.096 5.096 26 H 0.251 0.749 27 H 0.061 0.939 28 H 0.097 0.903 29 H 0.068 0.932 30 H 0.209 0.791 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.250 0.750 36 H 0.185 0.815 37 H 0.199 0.801 38 H 0.172 0.828 39 H 0.164 0.836 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -3.268 6.872 21.086 22.417 hybrid contribution 0.101 -0.039 -1.840 1.843 sum -3.168 6.833 19.246 20.667 Atomic orbital electron populations 1.22357 0.96704 1.01487 1.01210 1.20537 0.93819 0.94830 0.85151 0.93495 1.42668 1.78644 1.10511 1.05904 1.19621 1.35085 0.94277 0.88142 0.90421 1.25541 1.02878 0.96845 1.01474 1.69819 1.52565 1.10237 1.29455 0.85164 0.77826 0.77482 0.79423 1.21679 1.22396 1.19196 1.20769 0.97176 0.92710 0.84540 0.92635 1.22001 1.02058 0.95863 1.00652 1.46047 1.26262 1.55979 1.07319 1.17907 0.84565 0.80736 0.84664 1.90915 1.23952 1.45678 1.85920 1.22213 1.04163 1.07751 0.92816 1.21254 0.89453 0.89554 0.98954 1.18535 0.91993 1.09939 0.91115 1.21623 0.94498 1.04226 0.99709 1.21005 0.98083 1.08634 0.97970 1.22323 0.91139 1.02177 0.98644 1.42385 1.08644 1.41618 1.16906 0.74866 0.93939 0.90339 0.93227 0.79078 0.94077 0.93323 0.93471 0.91126 0.74954 0.81467 0.80103 0.82810 0.83648 0.81057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.88 9.01 71.98 0.65 -4.23 16 2 C 0.17 6.15 2.93 44.99 0.13 6.28 16 3 H 0.05 1.78 8.08 -2.38 -0.02 1.76 16 4 N -0.73 -36.16 5.03 -322.94 -1.63 -37.79 16 5 C -0.24 -13.03 9.93 84.03 0.83 -12.20 16 6 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 7 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 8 N -0.97 -59.36 13.06 21.65 0.28 -59.08 16 9 Si 0.97 45.79 29.55 68.60 2.03 47.82 16 10 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 11 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 12 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 13 C 0.15 5.17 2.62 44.99 0.12 5.29 16 14 H 0.06 2.21 7.58 -2.39 -0.02 2.19 16 15 C -0.15 -5.09 9.00 71.98 0.65 -4.44 16 16 N -0.70 -17.47 4.98 -451.59 -2.25 -19.72 16 17 C 0.53 13.68 6.98 85.05 0.59 14.27 16 18 O -0.58 -19.50 11.27 -4.61 -0.05 -19.55 16 19 C -0.25 -4.31 9.85 22.47 0.22 -4.09 16 20 C 0.03 0.47 9.96 22.51 0.22 0.70 16 21 C 0.00 -0.08 5.37 39.08 0.21 0.13 16 22 C -0.18 -4.08 10.86 22.65 0.25 -3.84 16 23 C -0.23 -5.64 10.81 22.01 0.24 -5.40 16 24 C -0.01 -0.14 11.90 83.45 0.99 0.85 16 25 N -0.50 -13.16 3.91 -187.33 -0.73 -13.89 16 26 H 0.41 10.91 7.30 -92.71 -0.68 10.23 16 27 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.08 1.70 6.29 -2.39 -0.02 1.68 16 29 H 0.05 1.58 6.57 -2.39 -0.02 1.57 16 30 H 0.38 20.02 5.77 -92.71 -0.54 19.48 16 31 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 32 H 0.05 1.94 6.29 -2.39 -0.02 1.92 16 33 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.07 2.19 6.56 -2.39 -0.02 2.18 16 35 H 0.41 7.67 6.53 -92.71 -0.61 7.07 16 36 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 37 H 0.18 1.50 8.06 -2.91 -0.02 1.47 16 38 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 39 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 40 H 0.17 3.58 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -71.02 327.53 2.48 -68.53 By element: Atomic # 1 Polarization: 44.91 SS G_CDS: -0.74 Total: 44.17 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: 5.57 Total: -10.49 kcal Atomic # 7 Polarization: -126.15 SS G_CDS: -4.32 Total: -130.48 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.05 Total: -19.55 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -71.02 2.48 -68.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275388367.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.705 kcal (2) G-P(sol) polarization free energy of solvation -71.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds