Wall clock time and date at job start Mon Mar 30 2020 02:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 C 1.50700 * 109.47092 * 120.00550 * 2 1 3 5 5 O 1.21283 * 119.99803 * 119.99700 * 4 2 1 6 6 N 1.34777 * 119.99675 * 300.27576 * 4 2 1 7 7 C 1.46496 * 120.00345 * 359.72090 * 6 4 2 8 8 C 1.46497 * 119.99525 * 179.72583 * 6 4 2 9 9 C 1.53009 * 109.47238 * 90.00006 * 8 6 4 10 10 N 1.46497 * 109.47238 * 179.97438 * 9 8 6 11 11 C 1.36934 * 120.00370 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99711 * 359.97438 * 11 10 9 13 13 C 1.38810 * 120.00367 * 179.97438 * 11 10 9 14 14 N 1.31622 * 119.99961 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99931 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47398 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46942 * 120.00226 * 15 13 11 18 18 H 1.48500 * 109.47466 * 240.00224 * 15 13 11 19 19 C 1.50703 * 109.46747 * 240.00334 * 2 1 3 20 20 C 1.38674 * 120.41661 * 119.72270 * 19 2 1 21 21 C 1.38631 * 118.42231 * 179.77767 * 20 19 2 22 22 C 1.38224 * 119.15617 * 0.51955 * 21 20 19 23 23 N 1.31858 * 120.76721 * 359.71953 * 22 21 20 24 24 C 1.31887 * 121.72353 * 0.02562 * 23 22 21 25 25 H 1.09004 * 109.47239 * 299.99568 * 1 2 3 26 26 H 1.09005 * 109.47323 * 59.99789 * 1 2 3 27 27 H 1.09006 * 109.47458 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47115 * 90.00316 * 7 6 4 29 29 H 1.08995 * 109.47364 * 210.00706 * 7 6 4 30 30 H 1.09002 * 109.47090 * 330.00257 * 7 6 4 31 31 H 1.09000 * 109.46889 * 209.99487 * 8 6 4 32 32 H 1.09001 * 109.47460 * 330.00097 * 8 6 4 33 33 H 1.09000 * 109.46757 * 299.99562 * 9 8 6 34 34 H 1.08993 * 109.47081 * 59.99692 * 9 8 6 35 35 H 0.97001 * 120.00037 * 359.97438 * 10 9 8 36 36 H 0.97004 * 119.99711 * 179.97438 * 14 13 11 37 37 H 1.08004 * 120.79168 * 0.02562 * 20 19 2 38 38 H 1.07998 * 120.41851 * 180.21738 * 21 20 19 39 39 H 1.07999 * 119.62198 * 179.74638 * 22 21 20 40 40 H 1.08000 * 119.61651 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1190 6 7 1.7021 -0.2534 2.4545 7 6 0.8599 0.9377 2.5891 8 6 2.1855 -0.9476 3.6505 9 6 3.5320 -0.3570 4.0740 10 7 4.0151 -1.0508 5.2703 11 6 5.2092 -0.6907 5.8355 12 1 5.7951 0.1047 5.3989 13 6 5.6667 -1.3477 6.9694 14 7 4.9529 -2.3174 7.5012 15 14 7.2960 -0.8568 7.7399 16 1 7.8998 0.2514 6.9572 17 1 7.0677 -0.4083 9.1370 18 1 8.2157 -2.0228 7.7383 19 6 2.0322 -0.7104 -1.2306 20 6 2.8252 -0.0431 -2.1519 21 6 3.2683 -0.7378 -3.2668 22 6 2.8985 -2.0599 -3.4273 23 7 2.1388 -2.6612 -2.5329 24 6 1.7033 -2.0330 -1.4581 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.1883 0.6403 2.6175 29 1 1.1144 1.4604 3.5110 30 1 1.0271 1.5988 1.7387 31 1 1.4644 -0.8242 4.4586 32 1 2.3070 -2.0083 3.4308 33 1 4.2530 -0.4804 3.2659 34 1 3.4105 0.7036 4.2937 35 1 3.4887 -1.7649 5.6627 36 1 5.2728 -2.7768 8.2933 37 1 3.0947 0.9921 -2.0025 38 1 3.8904 -0.2506 -4.0030 39 1 3.2360 -2.6070 -4.2952 40 1 1.0831 -2.5587 -0.7472 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317653839.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:06 Heat of formation + Delta-G solvation = -6.525226 kcal Electronic energy + Delta-G solvation = -21150.240961 eV Core-core repulsion = 17964.632415 eV Total energy + Delta-G solvation = -3185.608546 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.75239 -40.48819 -37.44153 -36.27787 -35.55472 -33.42151 -32.99397 -30.95710 -29.50596 -27.75469 -26.16190 -25.32902 -24.47959 -23.73520 -22.50407 -20.26639 -19.21977 -18.23177 -18.04301 -17.43202 -16.94597 -16.80282 -16.26359 -15.78304 -15.41146 -15.27007 -15.06445 -14.85886 -14.65559 -14.31858 -14.18803 -13.94294 -13.58159 -13.30900 -13.10752 -12.96111 -12.83465 -12.72668 -12.43913 -12.31753 -12.11168 -12.07954 -11.89136 -11.01722 -10.89155 -10.61437 -10.38377 -9.90186 -9.68829 -9.09379 -8.00340 -5.31410 0.16781 0.37530 1.44517 1.46774 1.56615 1.60050 1.96376 2.53816 2.88362 3.33075 3.39388 3.54520 3.71247 3.91651 4.04451 4.05472 4.10460 4.18039 4.20769 4.23634 4.35945 4.41531 4.54962 4.65008 4.71503 4.80623 4.85299 4.89445 4.99489 5.01361 5.08351 5.19556 5.24009 5.36576 5.40589 5.52505 5.79594 6.21312 6.40945 7.04839 7.16404 7.27282 7.98978 8.24092 9.23279 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023211 B = 0.003549 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.011949 B = 7887.226568 C = 8490.466117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.054 4.054 3 H 0.137 0.863 4 C 0.506 3.494 5 O -0.583 6.583 6 N -0.607 5.607 7 C 0.064 3.936 8 C 0.122 3.878 9 C 0.150 3.850 10 N -0.744 5.744 11 C -0.251 4.251 12 H 0.073 0.927 13 C -0.073 4.073 14 N -0.968 5.968 15 Si 0.978 3.022 16 H -0.266 1.266 17 H -0.286 1.286 18 H -0.293 1.293 19 C -0.128 4.128 20 C -0.074 4.074 21 C -0.170 4.170 22 C 0.078 3.922 23 N -0.522 5.522 24 C 0.108 3.892 25 H 0.099 0.901 26 H 0.089 0.911 27 H 0.048 0.952 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.055 0.945 33 H -0.004 1.004 34 H 0.033 0.967 35 H 0.375 0.625 36 H 0.254 0.746 37 H 0.165 0.835 38 H 0.169 0.831 39 H 0.176 0.824 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.319 11.562 -21.242 27.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.075 4.075 3 H 0.155 0.845 4 C 0.295 3.705 5 O -0.463 6.463 6 N -0.339 5.339 7 C -0.077 4.077 8 C -0.002 4.002 9 C 0.022 3.978 10 N -0.388 5.388 11 C -0.383 4.383 12 H 0.091 0.909 13 C -0.266 4.266 14 N -0.618 5.618 15 Si 0.806 3.194 16 H -0.191 1.191 17 H -0.213 1.213 18 H -0.220 1.220 19 C -0.130 4.130 20 C -0.099 4.099 21 C -0.190 4.190 22 C -0.079 4.079 23 N -0.231 5.231 24 C -0.048 4.048 25 H 0.117 0.883 26 H 0.108 0.892 27 H 0.067 0.933 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.120 0.880 31 H 0.115 0.885 32 H 0.073 0.927 33 H 0.014 0.986 34 H 0.051 0.949 35 H 0.207 0.793 36 H 0.062 0.938 37 H 0.183 0.817 38 H 0.186 0.814 39 H 0.193 0.807 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.062 10.295 -21.421 26.652 hybrid contribution 1.155 0.113 1.100 1.599 sum -10.907 10.408 -20.321 25.303 Atomic orbital electron populations 1.22104 0.89626 1.03257 1.05623 1.20256 0.99531 1.00517 0.87241 0.84508 1.21301 0.79429 0.84284 0.85508 1.90750 1.39730 1.28815 1.86977 1.47842 1.51149 1.30329 1.04570 1.22387 0.94766 0.85763 1.04816 1.21323 0.95188 0.96367 0.87340 1.20949 0.93751 0.95386 0.87699 1.42419 1.23293 1.42687 1.30356 1.19628 0.97406 1.14397 1.06856 0.90878 1.25641 1.02701 0.98880 0.99357 1.69829 1.40507 1.27109 1.24375 0.85011 0.78928 0.77380 0.78032 1.19059 1.21274 1.22016 1.20534 1.00005 0.95539 0.96934 1.21907 0.93568 1.01659 0.92791 1.22485 1.01312 0.95679 0.99497 1.23284 0.93428 0.93535 0.97628 1.67646 1.12034 1.39715 1.03709 1.22441 0.96879 0.92023 0.93490 0.88277 0.89241 0.93271 0.89600 0.90474 0.87963 0.88510 0.92651 0.98606 0.94934 0.79283 0.93757 0.81731 0.81368 0.80668 0.84839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.64 71.98 0.62 -1.17 16 2 C -0.05 -0.97 2.11 -12.29 -0.03 -1.00 16 3 H 0.14 1.60 7.20 -2.39 -0.02 1.58 16 4 C 0.51 14.50 6.95 87.66 0.61 15.11 16 5 O -0.58 -23.61 14.70 -3.04 -0.04 -23.65 16 6 N -0.61 -15.72 2.87 -846.76 -2.43 -18.15 16 7 C 0.06 0.90 8.80 127.77 1.12 2.02 16 8 C 0.12 4.21 5.52 86.38 0.48 4.69 16 9 C 0.15 6.47 6.58 86.38 0.57 7.03 16 10 N -0.74 -40.16 5.60 -343.45 -1.92 -42.08 16 11 C -0.25 -14.71 9.99 84.03 0.84 -13.87 16 12 H 0.07 4.14 7.83 -2.91 -0.02 4.12 16 13 C -0.07 -4.34 5.50 84.86 0.47 -3.88 16 14 N -0.97 -60.70 13.06 21.65 0.28 -60.42 16 15 Si 0.98 47.18 29.55 68.60 2.03 49.21 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 17 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 18 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 19 C -0.13 -2.85 4.40 -19.77 -0.09 -2.94 16 20 C -0.07 -1.29 9.81 22.47 0.22 -1.07 16 21 C -0.17 -2.83 10.11 22.36 0.23 -2.60 16 22 C 0.08 1.64 11.18 84.69 0.95 2.59 16 23 N -0.52 -14.80 10.36 -195.85 -2.03 -16.83 16 24 C 0.11 3.01 9.12 84.67 0.77 3.78 16 25 H 0.10 0.79 4.51 -2.38 -0.01 0.77 16 26 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.05 0.76 7.41 -2.38 -0.02 0.74 16 28 H 0.09 0.83 6.94 -2.39 -0.02 0.81 16 29 H 0.08 1.14 8.07 -2.39 -0.02 1.12 16 30 H 0.10 0.84 6.02 -2.39 -0.01 0.82 16 31 H 0.10 2.96 8.07 -2.39 -0.02 2.94 16 32 H 0.05 2.25 7.42 -2.39 -0.02 2.23 16 33 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 34 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.38 21.21 7.67 -92.71 -0.71 20.50 16 36 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 37 H 0.17 1.73 8.00 -2.91 -0.02 1.71 16 38 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 39 H 0.18 2.61 8.06 -2.91 -0.02 2.59 16 40 H 0.13 3.90 7.53 -2.91 -0.02 3.87 16 Total: -1.00 -82.19 331.74 2.97 -79.22 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.33 Total: 24.01 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 6.76 Total: 8.69 kcal Atomic # 7 Polarization: -131.37 SS G_CDS: -6.10 Total: -137.48 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.04 Total: -23.65 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -82.19 2.97 -79.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317653839.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.692 kcal (2) G-P(sol) polarization free energy of solvation -82.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds