Wall clock time and date at job start Mon Mar 30 2020 02:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.60208 * 2 1 4 4 C 1.53373 * 109.60656 * 120.49450 * 2 1 3 5 5 N 1.46953 * 109.45579 * 165.71267 * 4 2 1 6 6 C 1.34778 * 120.68486 * 113.97509 * 5 4 2 7 7 O 1.21279 * 119.99978 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99902 * 179.97438 * 6 5 4 9 9 C 1.53006 * 109.47050 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.46975 * 180.02562 * 9 8 6 11 11 C 1.50696 * 109.46767 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00658 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99970 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00000 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00091 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47184 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.46957 * 120.00100 * 15 13 11 18 18 H 1.48505 * 109.47085 * 239.99894 * 15 13 11 19 19 C 1.47435 * 118.63528 * 293.95947 * 5 4 2 20 20 C 1.51056 * 107.03596 * 45.10486 * 19 5 4 21 21 C 1.34468 * 128.45825 * 168.72854 * 20 19 5 22 22 N 1.35214 * 107.57216 * 179.90650 * 21 20 19 23 23 H 0.96996 * 126.00319 * 180.02562 * 22 21 20 24 24 N 1.40294 * 107.98861 * 0.02620 * 22 21 20 25 25 C 1.30225 * 108.18052 * 0.03811 * 24 22 21 26 26 H 1.09009 * 109.47235 * 180.32385 * 1 2 3 27 27 H 1.08995 * 109.47348 * 300.32340 * 1 2 3 28 28 H 1.09003 * 109.47550 * 60.32615 * 1 2 3 29 29 H 1.08996 * 109.47178 * 285.70435 * 4 2 1 30 30 H 1.09000 * 109.46844 * 45.71528 * 4 2 1 31 31 H 1.08997 * 109.47373 * 300.00761 * 8 6 5 32 32 H 1.08999 * 109.46939 * 60.01027 * 8 6 5 33 33 H 1.09001 * 109.46708 * 300.00210 * 9 8 6 34 34 H 1.08999 * 109.46887 * 60.00412 * 9 8 6 35 35 H 1.08997 * 109.47260 * 300.00064 * 10 9 8 36 36 H 1.08999 * 109.47126 * 60.00376 * 10 9 8 37 37 H 0.97002 * 120.00127 * 179.97438 * 14 13 11 38 38 H 1.08998 * 109.94060 * 285.72641 * 19 5 4 39 39 H 1.08999 * 109.94465 * 164.48415 * 19 5 4 40 40 H 1.08003 * 126.21118 * 359.87471 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0269 0.0000 4 6 2.0446 -0.7332 1.2450 5 7 3.4738 -1.0332 1.0805 6 6 4.3947 -0.4495 1.8728 7 8 4.0472 0.3326 2.7321 8 6 5.8562 -0.7688 1.6910 9 6 6.6812 0.0204 2.7096 10 6 8.1651 -0.3033 2.5246 11 6 8.9776 0.4745 3.5275 12 1 8.4850 1.1335 4.2271 13 6 10.3501 0.3449 3.5519 14 7 10.9501 -0.4571 2.6996 15 14 11.3574 1.3085 4.7954 16 1 10.4509 2.1333 5.6341 17 1 12.1106 0.3650 5.6600 18 1 12.3114 2.1938 4.0803 19 6 3.8795 -1.9860 0.0311 20 6 3.1100 -1.6237 -1.2172 21 6 3.2941 -2.0700 -2.4722 22 7 2.3699 -1.4723 -3.2577 23 1 2.2625 -1.6036 -4.2127 24 7 1.5937 -0.6291 -2.4487 25 6 2.0363 -0.7177 -1.2271 26 1 -0.3634 -1.0277 0.0058 27 1 -0.3634 0.5188 0.8870 28 1 -0.3634 0.5088 -0.8929 29 1 1.9045 -0.1018 2.1223 30 1 1.4906 -1.6630 1.3740 31 1 6.0166 -1.8362 1.8428 32 1 6.1652 -0.4948 0.6823 33 1 6.5209 1.0878 2.5581 34 1 6.3721 -0.2540 3.7182 35 1 8.3257 -1.3707 2.6758 36 1 8.4739 -0.0287 1.5160 37 1 11.9157 -0.5480 2.7165 38 1 3.6338 -3.0029 0.3372 39 1 4.9502 -1.9010 -0.1544 40 1 4.0444 -2.7769 -2.7944 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332262249.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:35 Heat of formation + Delta-G solvation = 22.090592 kcal Electronic energy + Delta-G solvation = -21144.397704 eV Core-core repulsion = 17960.030033 eV Total energy + Delta-G solvation = -3184.367671 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.74406 -39.58673 -36.63570 -34.35190 -34.03355 -31.97567 -31.23706 -30.49036 -28.31475 -26.70532 -25.51997 -23.80660 -22.99046 -20.86047 -20.44089 -19.61577 -18.53389 -17.87699 -16.73124 -16.20042 -15.80768 -15.66969 -15.22550 -14.64626 -14.37606 -14.13759 -13.70861 -13.55523 -13.14112 -12.98319 -12.78430 -12.31925 -12.13940 -12.05608 -11.77339 -11.62715 -11.30443 -11.21264 -10.80709 -10.77367 -10.51233 -10.48806 -9.66297 -9.63634 -9.61793 -9.23088 -8.97346 -8.80761 -8.57062 -8.29863 -5.95541 -3.96456 1.64761 2.46469 2.58378 2.92412 3.04986 3.35438 3.42714 3.48768 4.22210 4.44998 4.51299 4.70150 4.76943 4.95774 5.07517 5.18301 5.26039 5.32010 5.40178 5.40781 5.56145 5.62063 5.66728 5.73165 5.77667 5.82873 5.89850 5.99555 6.28318 6.34021 6.52283 6.77147 6.97649 7.02389 7.20122 7.39933 7.52623 7.74375 7.87188 8.05674 8.44360 8.50158 9.10956 9.67450 11.16020 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029130 B = 0.003342 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.967295 B = 8377.326966 C = 9033.045320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.027 4.027 3 H 0.093 0.907 4 C 0.119 3.881 5 N -0.621 5.621 6 C 0.519 3.481 7 O -0.536 6.536 8 C -0.137 4.137 9 C -0.095 4.095 10 C 0.020 3.980 11 C -0.516 4.516 12 H 0.057 0.943 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.891 3.109 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.285 1.285 19 C 0.189 3.811 20 C -0.256 4.256 21 C 0.073 3.927 22 N -0.485 5.485 23 H 0.439 0.561 24 N -0.287 5.287 25 C 0.098 3.902 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.016 0.984 36 H 0.015 0.985 37 H 0.259 0.741 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.656 -6.279 -12.049 23.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.049 4.049 3 H 0.111 0.889 4 C -0.005 4.005 5 N -0.356 5.356 6 C 0.309 3.691 7 O -0.412 6.412 8 C -0.177 4.177 9 C -0.133 4.133 10 C -0.017 4.017 11 C -0.554 4.554 12 H 0.075 0.925 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.211 1.211 19 C 0.065 3.935 20 C -0.268 4.268 21 C -0.074 4.074 22 N -0.193 5.193 23 H 0.283 0.717 24 N -0.109 5.109 25 C -0.072 4.072 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.119 0.881 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.116 0.884 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -20.496 -5.376 -12.378 24.539 hybrid contribution 1.282 -0.132 0.270 1.317 sum -19.214 -5.508 -12.108 23.369 Atomic orbital electron populations 1.21709 0.92966 1.02350 1.02626 1.20137 0.96366 0.99181 0.89201 0.88861 1.21569 0.81069 1.00335 0.97488 1.48243 1.06560 1.45518 1.35240 1.21253 0.88701 0.79229 0.79949 1.90663 1.81900 1.34746 1.33884 1.21875 0.89786 1.02982 1.03070 1.21457 0.96755 0.98607 0.96510 1.19134 0.88603 0.96870 0.97079 1.21322 0.91561 1.25399 1.17150 0.92517 1.25019 0.98044 0.95537 0.95944 1.69970 1.09293 1.37841 1.36691 0.86549 0.80189 0.79940 0.81436 1.19665 1.21060 1.21082 1.20054 0.98747 0.92055 0.82662 1.20339 1.03908 1.06859 0.95724 1.21992 0.95323 0.99246 0.90831 1.46349 1.26538 1.35835 1.10590 0.71665 1.77025 1.17607 1.14005 1.02227 1.22168 0.94781 0.96853 0.93357 0.92434 0.91665 0.91670 0.88057 0.91063 0.89310 0.89392 0.92741 0.92660 0.96586 0.96647 0.93171 0.90550 0.88414 0.80213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.06 37.16 0.34 -0.86 16 2 C -0.03 -0.30 3.28 -91.48 -0.30 -0.60 16 3 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.12 1.35 5.66 -3.60 -0.02 1.33 16 5 N -0.62 -8.02 2.93 -173.50 -0.51 -8.52 16 6 C 0.52 8.56 7.70 -10.98 -0.08 8.47 16 7 O -0.54 -10.76 15.39 5.56 0.09 -10.68 16 8 C -0.14 -2.29 4.10 -27.88 -0.11 -2.41 16 9 C -0.10 -2.07 4.44 -26.73 -0.12 -2.19 16 10 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 11 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 12 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 13 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 15 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 16 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 19 C 0.19 1.91 6.62 -4.51 -0.03 1.88 16 20 C -0.26 -2.65 5.99 -104.93 -0.63 -3.28 16 21 C 0.07 0.57 11.95 -17.39 -0.21 0.37 16 22 N -0.48 -4.08 7.37 30.34 0.22 -3.86 16 23 H 0.44 2.21 8.96 -182.45 -1.64 0.57 16 24 N -0.29 -3.35 12.56 33.75 0.42 -2.93 16 25 C 0.10 1.14 6.48 -82.32 -0.53 0.60 16 26 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.10 1.26 7.00 -51.93 -0.36 0.89 16 30 H 0.07 0.69 8.07 -51.93 -0.42 0.27 16 31 H 0.09 1.32 8.09 -51.93 -0.42 0.90 16 32 H 0.09 1.35 7.56 -51.93 -0.39 0.96 16 33 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 34 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.10 0.93 6.17 -51.93 -0.32 0.61 16 40 H 0.18 0.74 8.06 -52.48 -0.42 0.32 16 LS Contribution 330.37 15.07 4.98 4.98 Total: -1.00 -35.51 330.37 -8.65 -44.15 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -7.32 Total: -3.77 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -2.25 Total: -10.08 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 0.88 Total: -41.64 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.51 -8.65 -44.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332262249.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.242 kcal (2) G-P(sol) polarization free energy of solvation -35.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds