Wall clock time and date at job start Mon Mar 30 2020 02:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.60208 * 2 1 4 4 C 1.53373 * 109.60656 * 120.49450 * 2 1 3 5 5 N 1.46953 * 109.45579 * 165.71267 * 4 2 1 6 6 C 1.34778 * 120.68486 * 113.97509 * 5 4 2 7 7 O 1.21279 * 119.99978 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99902 * 179.97438 * 6 5 4 9 9 C 1.53006 * 109.47050 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.46975 * 180.02562 * 9 8 6 11 11 C 1.50696 * 109.46767 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00658 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99970 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00000 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00091 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47184 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.46957 * 120.00100 * 15 13 11 18 18 H 1.48505 * 109.47085 * 239.99894 * 15 13 11 19 19 C 1.47435 * 118.63528 * 293.95947 * 5 4 2 20 20 C 1.51056 * 107.03596 * 45.10486 * 19 5 4 21 21 C 1.34468 * 128.45825 * 168.72854 * 20 19 5 22 22 N 1.35214 * 107.57216 * 179.90650 * 21 20 19 23 23 H 0.96996 * 126.00319 * 180.02562 * 22 21 20 24 24 N 1.40294 * 107.98861 * 0.02620 * 22 21 20 25 25 C 1.30225 * 108.18052 * 0.03811 * 24 22 21 26 26 H 1.09009 * 109.47235 * 180.32385 * 1 2 3 27 27 H 1.08995 * 109.47348 * 300.32340 * 1 2 3 28 28 H 1.09003 * 109.47550 * 60.32615 * 1 2 3 29 29 H 1.08996 * 109.47178 * 285.70435 * 4 2 1 30 30 H 1.09000 * 109.46844 * 45.71528 * 4 2 1 31 31 H 1.08997 * 109.47373 * 300.00761 * 8 6 5 32 32 H 1.08999 * 109.46939 * 60.01027 * 8 6 5 33 33 H 1.09001 * 109.46708 * 300.00210 * 9 8 6 34 34 H 1.08999 * 109.46887 * 60.00412 * 9 8 6 35 35 H 1.08997 * 109.47260 * 300.00064 * 10 9 8 36 36 H 1.08999 * 109.47126 * 60.00376 * 10 9 8 37 37 H 0.97002 * 120.00127 * 179.97438 * 14 13 11 38 38 H 1.08998 * 109.94060 * 285.72641 * 19 5 4 39 39 H 1.08999 * 109.94465 * 164.48415 * 19 5 4 40 40 H 1.08003 * 126.21118 * 359.87471 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0269 0.0000 4 6 2.0446 -0.7332 1.2450 5 7 3.4738 -1.0332 1.0805 6 6 4.3947 -0.4495 1.8728 7 8 4.0472 0.3326 2.7321 8 6 5.8562 -0.7688 1.6910 9 6 6.6812 0.0204 2.7096 10 6 8.1651 -0.3033 2.5246 11 6 8.9776 0.4745 3.5275 12 1 8.4850 1.1335 4.2271 13 6 10.3501 0.3449 3.5519 14 7 10.9501 -0.4571 2.6996 15 14 11.3574 1.3085 4.7954 16 1 10.4509 2.1333 5.6341 17 1 12.1106 0.3650 5.6600 18 1 12.3114 2.1938 4.0803 19 6 3.8795 -1.9860 0.0311 20 6 3.1100 -1.6237 -1.2172 21 6 3.2941 -2.0700 -2.4722 22 7 2.3699 -1.4723 -3.2577 23 1 2.2625 -1.6036 -4.2127 24 7 1.5937 -0.6291 -2.4487 25 6 2.0363 -0.7177 -1.2271 26 1 -0.3634 -1.0277 0.0058 27 1 -0.3634 0.5188 0.8870 28 1 -0.3634 0.5088 -0.8929 29 1 1.9045 -0.1018 2.1223 30 1 1.4906 -1.6630 1.3740 31 1 6.0166 -1.8362 1.8428 32 1 6.1652 -0.4948 0.6823 33 1 6.5209 1.0878 2.5581 34 1 6.3721 -0.2540 3.7182 35 1 8.3257 -1.3707 2.6758 36 1 8.4739 -0.0287 1.5160 37 1 11.9157 -0.5480 2.7165 38 1 3.6338 -3.0029 0.3372 39 1 4.9502 -1.9010 -0.1544 40 1 4.0444 -2.7769 -2.7944 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332262249.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:35 Heat of formation + Delta-G solvation = -1.364802 kcal Electronic energy + Delta-G solvation = -21145.414806 eV Core-core repulsion = 17960.030033 eV Total energy + Delta-G solvation = -3185.384773 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.49875 -40.77643 -37.67461 -36.09918 -35.13604 -33.92307 -32.03419 -31.31393 -29.93532 -27.77664 -26.60378 -25.34520 -24.04854 -22.19715 -21.49422 -20.80091 -19.46680 -18.80333 -18.31620 -17.78097 -16.88818 -16.82747 -16.47690 -16.18525 -15.48108 -15.29741 -14.82590 -14.47392 -14.21949 -14.13378 -13.91395 -13.83566 -13.66665 -13.10547 -12.98083 -12.81074 -12.61971 -12.47083 -12.44407 -12.31233 -12.04384 -11.54606 -11.52081 -11.42325 -11.19731 -10.71443 -10.51848 -10.40786 -9.75944 -9.37665 -8.17996 -6.27220 0.96727 1.40781 1.41361 1.55028 1.65398 1.69565 1.93618 2.05749 2.43718 3.15078 3.46233 3.65428 3.74047 3.93046 4.14368 4.23490 4.27543 4.30065 4.46420 4.50238 4.57846 4.64306 4.77776 4.79562 4.89830 4.93675 5.01233 5.05661 5.11299 5.14413 5.23043 5.26458 5.50574 5.57579 5.61931 5.79699 5.89973 6.29943 6.39930 6.48124 6.71510 6.88204 7.20668 7.41208 8.93613 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029130 B = 0.003342 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.967295 B = 8377.326966 C = 9033.045320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.025 4.025 3 H 0.073 0.927 4 C 0.119 3.881 5 N -0.613 5.613 6 C 0.518 3.482 7 O -0.583 6.583 8 C -0.127 4.127 9 C -0.082 4.082 10 C 0.027 3.973 11 C -0.546 4.546 12 H 0.050 0.950 13 C 0.004 3.996 14 N -0.928 5.928 15 Si 0.960 3.040 16 H -0.269 1.269 17 H -0.275 1.275 18 H -0.276 1.276 19 C 0.186 3.814 20 C -0.283 4.283 21 C 0.094 3.906 22 N -0.476 5.476 23 H 0.453 0.547 24 N -0.319 5.319 25 C 0.079 3.921 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.036 0.964 34 H 0.041 0.959 35 H 0.004 0.996 36 H 0.001 0.999 37 H 0.264 0.736 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.715 -7.505 -12.949 24.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.047 4.047 3 H 0.091 0.909 4 C -0.004 4.004 5 N -0.345 5.345 6 C 0.309 3.691 7 O -0.463 6.463 8 C -0.167 4.167 9 C -0.121 4.121 10 C -0.010 4.010 11 C -0.584 4.584 12 H 0.068 0.932 13 C -0.194 4.194 14 N -0.568 5.568 15 Si 0.785 3.215 16 H -0.193 1.193 17 H -0.200 1.200 18 H -0.202 1.202 19 C 0.064 3.936 20 C -0.295 4.295 21 C -0.054 4.054 22 N -0.186 5.186 23 H 0.300 0.700 24 N -0.142 5.142 25 C -0.089 4.089 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.131 0.869 32 H 0.122 0.878 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.023 0.977 36 H 0.019 0.981 37 H 0.073 0.927 38 H 0.119 0.881 39 H 0.123 0.877 40 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -20.588 -6.628 -13.331 25.408 hybrid contribution 1.285 0.200 0.439 1.372 sum -19.304 -6.429 -12.892 24.087 Atomic orbital electron populations 1.21642 0.91444 1.02846 1.02867 1.20057 0.97624 0.97937 0.89051 0.90871 1.21661 0.80327 1.01181 0.97203 1.48238 1.06687 1.44835 1.34733 1.21094 0.89004 0.79026 0.80013 1.90646 1.82487 1.36997 1.36128 1.21700 0.89431 1.03452 1.02097 1.21172 0.95022 0.98344 0.97521 1.19012 0.90924 0.95606 0.95470 1.21726 0.92630 1.26061 1.18007 0.93209 1.25874 0.99173 0.96459 0.97889 1.70063 1.09906 1.38848 1.38020 0.85478 0.78460 0.78634 0.78963 1.19329 1.20014 1.20159 1.20308 0.99241 0.92299 0.81796 1.20480 1.04298 1.07944 0.96804 1.22598 0.94782 0.98281 0.89726 1.46421 1.25989 1.34889 1.11304 0.69972 1.76954 1.19055 1.15498 1.02646 1.22292 0.95599 0.97558 0.93464 0.91747 0.90604 0.92203 0.89594 0.88851 0.86922 0.87757 0.94481 0.93981 0.97730 0.98094 0.92692 0.88145 0.87662 0.76083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 9.06 71.98 0.65 -1.52 16 2 C -0.03 -0.54 3.28 -11.35 -0.04 -0.58 16 3 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 4 C 0.12 2.63 5.66 86.42 0.49 3.12 16 5 N -0.61 -15.11 2.93 -821.21 -2.40 -17.51 16 6 C 0.52 16.97 7.70 87.66 0.68 17.65 16 7 O -0.58 -23.99 15.39 -3.03 -0.05 -24.04 16 8 C -0.13 -4.15 4.10 29.85 0.12 -4.02 16 9 C -0.08 -3.65 4.44 30.60 0.14 -3.51 16 10 C 0.03 1.42 4.97 29.85 0.15 1.57 16 11 C -0.55 -32.18 9.11 25.60 0.23 -31.95 16 12 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 13 C 0.00 0.23 5.46 84.66 0.46 0.69 16 14 N -0.93 -55.97 13.29 21.45 0.28 -55.68 16 15 Si 0.96 45.23 29.54 68.60 2.03 47.25 16 16 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 17 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 C 0.19 3.27 6.62 85.57 0.57 3.84 16 20 C -0.28 -5.18 5.99 -20.06 -0.12 -5.30 16 21 C 0.09 1.16 11.95 83.31 1.00 2.16 16 22 N -0.48 -6.83 7.37 -57.93 -0.43 -7.26 16 23 H 0.45 3.40 8.96 -213.20 -1.91 1.48 16 24 N -0.32 -7.05 12.56 -47.12 -0.59 -7.65 16 25 C 0.08 1.75 6.48 43.41 0.28 2.03 16 26 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 27 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.09 2.18 7.00 -2.39 -0.02 2.16 16 30 H 0.09 1.65 8.07 -2.39 -0.02 1.63 16 31 H 0.11 3.13 8.09 -2.39 -0.02 3.11 16 32 H 0.10 3.06 7.56 -2.39 -0.02 3.04 16 33 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 34 H 0.04 1.94 8.10 -2.39 -0.02 1.92 16 35 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 37 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 38 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.11 1.68 6.17 -2.39 -0.01 1.66 16 40 H 0.22 0.72 8.06 -2.91 -0.02 0.70 16 Total: -1.00 -77.78 330.37 2.58 -75.20 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -0.87 Total: 5.50 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: 4.61 Total: -15.82 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -3.14 Total: -88.10 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.05 Total: -24.04 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -77.78 2.58 -75.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332262249.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.838 kcal (2) G-P(sol) polarization free energy of solvation -77.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds